Wall clock time and date at job start Tue Mar 31 2020 08:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32994 * 120.00353 * 2 1 4 4 C 1.50695 * 120.00353 * 180.02562 * 3 2 1 5 5 C 1.47103 * 119.99674 * 359.97438 * 3 2 1 6 6 O 1.21614 * 120.00662 * 262.56530 * 5 3 2 7 7 N 1.34784 * 119.99469 * 82.56803 * 5 3 2 8 8 C 1.46923 * 120.70071 * 355.24276 * 7 5 3 9 9 C 1.53199 * 108.91801 * 125.81259 * 8 7 5 10 10 C 1.53159 * 109.27064 * 55.23640 * 9 8 7 11 11 C 1.52245 * 109.62776 * 299.83362 * 10 9 8 12 12 C 1.54500 * 110.25315 * 297.04454 * 11 10 9 13 13 C 1.55026 * 101.52030 * 276.23280 * 12 11 10 14 14 N 1.47486 * 104.90262 * 323.64079 * 13 12 11 15 15 C 1.36933 * 125.66420 * 204.03344 * 14 13 12 16 16 H 1.07990 * 120.00285 * 179.97438 * 15 14 13 17 17 C 1.38820 * 119.99769 * 359.97312 * 15 14 13 18 18 N 1.31620 * 120.00015 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99790 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47246 * 90.00348 * 19 17 15 21 21 H 1.48504 * 109.46886 * 209.99823 * 19 17 15 22 22 H 1.48494 * 109.47245 * 329.99980 * 19 17 15 23 23 C 1.47197 * 108.67583 * 24.00878 * 14 13 12 24 24 C 1.47082 * 120.69641 * 175.22207 * 7 5 3 25 25 H 1.09003 * 109.46960 * 300.00253 * 1 2 3 26 26 H 1.08998 * 109.47374 * 59.99772 * 1 2 3 27 27 H 1.08999 * 109.47169 * 180.02562 * 1 2 3 28 28 H 1.08007 * 120.00172 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47494 * 275.03378 * 4 3 2 30 30 H 1.09001 * 109.47206 * 35.03348 * 4 3 2 31 31 H 1.09003 * 109.47363 * 155.03149 * 4 3 2 32 32 H 1.08993 * 109.56875 * 5.97979 * 8 7 5 33 33 H 1.09004 * 109.56587 * 245.63930 * 8 7 5 34 34 H 1.08994 * 109.50133 * 295.29478 * 9 8 7 35 35 H 1.08995 * 109.50130 * 175.17417 * 9 8 7 36 36 H 1.08992 * 109.44540 * 59.87547 * 10 9 8 37 37 H 1.09001 * 109.43785 * 179.80573 * 10 9 8 38 38 H 1.09005 * 111.01235 * 34.28910 * 12 11 10 39 39 H 1.08993 * 111.01304 * 158.16810 * 12 11 10 40 40 H 1.08997 * 110.34636 * 204.78633 * 13 12 11 41 41 H 1.09000 * 110.44456 * 82.54918 * 13 12 11 42 42 H 0.96995 * 119.99853 * 179.97438 * 18 17 15 43 43 H 1.09001 * 109.90877 * 239.12865 * 23 14 13 44 44 H 1.08999 * 109.90925 * 117.85661 * 23 14 13 45 45 H 1.09000 * 109.57788 * 352.26933 * 24 7 5 46 46 H 1.09006 * 109.57809 * 112.66132 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6789 1.1517 -0.0006 5 6 1.4365 2.4257 -0.0006 6 8 1.2508 3.0203 -1.0451 7 7 0.9684 2.9340 1.1567 8 6 1.0923 2.1801 2.4116 9 6 1.7916 3.0600 3.4526 10 6 1.0241 4.3773 3.5987 11 6 0.9959 5.1037 2.2610 12 6 2.4304 5.4752 1.8237 13 6 2.6550 6.8019 2.5936 14 7 1.3444 7.4781 2.5745 15 6 1.1396 8.8259 2.7021 16 1 0.1363 9.2247 2.6745 17 6 2.2216 9.6799 2.8669 18 7 3.4443 9.1940 2.9000 19 14 1.9420 11.5185 3.0416 20 1 1.7722 11.8592 4.4770 21 1 3.1119 12.2513 2.4941 22 1 0.7200 11.9068 2.2927 23 6 0.2932 6.4635 2.3949 24 6 0.3231 4.2553 1.1898 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 2.0470 -0.9354 0.0004 29 1 4.0427 1.0613 1.0229 30 1 4.0421 0.3104 -0.5908 31 1 4.0422 2.0834 -0.4343 32 1 1.6817 1.2795 2.2398 33 1 0.1008 1.9060 2.7723 34 1 2.8114 3.2669 3.1282 35 1 1.8122 2.5425 4.4117 36 1 0.0037 4.1690 3.9199 37 1 1.5175 5.0042 4.3414 38 1 3.1445 4.7144 2.1392 39 1 2.4818 5.6346 0.7467 40 1 3.4036 7.4116 2.0877 41 1 2.9623 6.5994 3.6196 42 1 4.2003 9.7907 3.0147 43 1 -0.2780 6.6768 1.4913 44 1 -0.3675 6.4561 3.2617 45 1 0.4314 4.7391 0.2190 46 1 -0.7347 4.1394 1.4263 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054111461.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:25 Heat of formation + Delta-G solvation = 0.907136 kcal Electronic energy + Delta-G solvation = -24982.306223 eV Core-core repulsion = 21679.596783 eV Total energy + Delta-G solvation = -3302.709441 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.53946 -38.55615 -35.83579 -35.38921 -32.89922 -31.83640 -30.41726 -30.06261 -28.60662 -26.04410 -25.64161 -24.62925 -23.62560 -22.32687 -21.50659 -20.09082 -18.32785 -17.97122 -16.77450 -16.55858 -15.62698 -15.50621 -15.05075 -14.63171 -14.29523 -14.11056 -13.80509 -13.67647 -13.29825 -13.28071 -13.01686 -12.74062 -12.70316 -12.35084 -12.20679 -11.97983 -11.88034 -11.70019 -11.50790 -11.13824 -10.97410 -10.86486 -10.72513 -10.52556 -10.08003 -10.05274 -9.96312 -9.70340 -9.63780 -9.41262 -9.04435 -8.60207 -8.44855 -6.78276 -5.60925 -3.02197 1.62178 2.65931 3.13946 3.42419 3.47422 3.49542 4.42669 4.52562 4.69399 4.81309 4.95271 5.01633 5.10574 5.19375 5.27318 5.32588 5.37648 5.44337 5.47603 5.50314 5.54834 5.60562 5.70823 5.73683 5.84462 5.89312 5.94986 5.97300 6.03532 6.13010 6.22948 6.32782 6.40821 6.42485 6.49103 6.55878 6.66393 6.77122 6.86093 6.98248 7.48547 7.57428 7.67367 7.91199 8.23320 8.41076 9.26530 9.87532 10.53288 11.42820 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.029726 B = 0.003924 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.698439 B = 7133.550219 C = 7231.402358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C -0.158 4.158 4 C -0.105 4.105 5 C 0.558 3.442 6 O -0.539 6.539 7 N -0.599 5.599 8 C 0.109 3.891 9 C -0.136 4.136 10 C -0.099 4.099 11 C -0.083 4.083 12 C -0.130 4.130 13 C 0.155 3.845 14 N -0.603 5.603 15 C -0.221 4.221 16 H 0.077 0.923 17 C -0.012 4.012 18 N -0.922 5.922 19 Si 0.913 3.087 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.149 3.851 24 C 0.129 3.871 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.123 0.877 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.103 0.897 41 H 0.010 0.990 42 H 0.251 0.749 43 H 0.024 0.976 44 H 0.023 0.977 45 H 0.092 0.908 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.068 -20.607 -0.656 20.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C -0.161 4.161 4 C -0.162 4.162 5 C 0.346 3.654 6 O -0.416 6.416 7 N -0.332 5.332 8 C -0.014 4.014 9 C -0.174 4.174 10 C -0.137 4.137 11 C -0.085 4.085 12 C -0.169 4.169 13 C 0.031 3.969 14 N -0.329 5.329 15 C -0.349 4.349 16 H 0.094 0.906 17 C -0.207 4.207 18 N -0.571 5.571 19 Si 0.744 3.256 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.023 3.977 24 C 0.007 3.993 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.141 0.859 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.120 0.880 41 H 0.028 0.972 42 H 0.062 0.938 43 H 0.042 0.958 44 H 0.041 0.959 45 H 0.111 0.889 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.064 -20.074 -1.192 20.341 hybrid contribution -0.119 0.913 0.278 0.962 sum -3.183 -19.161 -0.914 19.445 Atomic orbital electron populations 1.20972 0.92793 1.02654 1.02759 1.23260 0.96272 0.96715 0.98294 1.21525 0.97078 0.93107 1.04341 1.20678 0.89707 1.03379 1.02479 1.18498 0.78281 0.85111 0.83468 1.90812 1.58394 1.61188 1.31231 1.48117 1.58588 1.19099 1.07372 1.21731 1.00770 0.94702 0.84169 1.22006 1.00546 0.96604 0.98281 1.21340 0.99873 0.95293 0.97174 1.21322 0.97823 0.95007 0.94302 1.23013 0.93928 0.99650 1.00309 1.21908 0.89805 0.88955 0.96259 1.44527 1.01005 1.01822 1.85508 1.19082 0.93069 0.80838 1.41954 0.90551 1.24774 0.95280 0.98172 1.02467 1.69817 0.97392 1.32778 1.57112 0.86084 0.76949 0.84922 0.77628 1.21713 1.21695 1.20717 1.21155 0.91939 0.86998 0.97641 1.21551 0.95231 0.81724 1.00767 0.91214 0.91172 0.91542 0.85908 0.90848 0.91100 0.91221 0.89956 0.91581 0.90922 0.91050 0.92350 0.90789 0.92467 0.92442 0.87970 0.97196 0.93834 0.95833 0.95904 0.88946 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.16 36.00 0.33 -0.85 16 2 C -0.13 -1.14 9.40 -36.13 -0.34 -1.48 16 3 C -0.16 -1.79 3.99 -102.85 -0.41 -2.20 16 4 C -0.11 -1.02 10.02 36.00 0.36 -0.66 16 5 C 0.56 8.35 5.91 -12.66 -0.07 8.28 16 6 O -0.54 -10.37 16.55 5.27 0.09 -10.28 16 7 N -0.60 -8.18 2.82 -174.56 -0.49 -8.67 16 8 C 0.11 1.15 5.36 -3.71 -0.02 1.13 16 9 C -0.14 -1.58 5.90 -26.55 -0.16 -1.73 16 10 C -0.10 -1.45 4.55 -27.03 -0.12 -1.57 16 11 C -0.08 -1.44 0.55 -154.12 -0.09 -1.52 16 12 C -0.13 -2.58 5.73 -24.87 -0.14 -2.72 16 13 C 0.16 3.83 5.57 -2.43 -0.01 3.82 16 14 N -0.60 -15.63 3.40 -170.23 -0.58 -16.21 16 15 C -0.22 -6.26 10.28 -15.06 -0.15 -6.41 16 16 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 17 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 18 N -0.92 -27.27 10.09 55.49 0.56 -26.71 16 19 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.15 3.13 6.43 -3.33 -0.02 3.11 16 24 C 0.13 2.03 4.96 -4.07 -0.02 2.01 16 25 H 0.07 0.62 7.12 -51.93 -0.37 0.25 16 26 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 31 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 32 H 0.08 0.74 5.95 -51.93 -0.31 0.43 16 33 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 34 H 0.07 0.93 6.22 -51.93 -0.32 0.60 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 1.25 7.49 -51.93 -0.39 0.86 16 38 H 0.06 1.03 6.00 -51.93 -0.31 0.71 16 39 H 0.06 1.22 7.90 -51.93 -0.41 0.81 16 40 H 0.10 2.88 5.88 -51.93 -0.31 2.57 16 41 H 0.01 0.26 7.76 -51.93 -0.40 -0.14 16 42 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.02 0.50 7.80 -51.93 -0.40 0.10 16 44 H 0.02 0.47 7.83 -51.93 -0.41 0.07 16 45 H 0.09 1.69 6.90 -51.93 -0.36 1.33 16 46 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 351.18 15.07 5.29 5.29 Total: -1.00 -32.56 351.18 -8.88 -41.44 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -7.76 Total: -0.99 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -0.97 Total: -1.25 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.51 Total: -51.59 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.56 -8.88 -41.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054111461.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.347 kcal (2) G-P(sol) polarization free energy of solvation -32.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds