Wall clock time and date at job start Tue Mar 31 2020 08:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32996 * 119.99734 * 2 1 4 4 C 1.50699 * 119.99899 * 0.02562 * 3 2 1 5 5 C 1.47099 * 119.99914 * 179.97438 * 3 2 1 6 6 O 1.21609 * 119.99938 * 336.35675 * 5 3 2 7 7 N 1.34778 * 120.00066 * 156.36032 * 5 3 2 8 8 C 1.47187 * 120.87565 * 173.94781 * 7 5 3 9 9 C 1.53188 * 109.00728 * 125.79313 * 8 7 5 10 10 C 1.53173 * 109.27046 * 55.23599 * 9 8 7 11 11 C 1.52240 * 109.64959 * 299.82066 * 10 9 8 12 12 C 1.54475 * 110.29499 * 182.00775 * 11 10 9 13 13 C 1.55023 * 101.53087 * 153.34121 * 12 11 10 14 14 N 1.47483 * 104.90700 * 323.65231 * 13 12 11 15 15 C 1.36935 * 125.66636 * 204.01739 * 14 13 12 16 16 H 1.08007 * 119.99992 * 335.54771 * 15 14 13 17 17 C 1.38808 * 120.00413 * 155.55766 * 15 14 13 18 18 N 1.31618 * 120.00554 * 161.69638 * 17 15 14 19 19 Si 1.86804 * 119.99757 * 341.69587 * 17 15 14 20 20 H 1.48501 * 109.47010 * 88.24631 * 19 17 15 21 21 H 1.48503 * 109.47091 * 208.24330 * 19 17 15 22 22 H 1.48495 * 109.46912 * 328.24275 * 19 17 15 23 23 C 1.47187 * 108.67222 * 24.02085 * 14 13 12 24 24 C 1.47086 * 120.69970 * 353.81315 * 7 5 3 25 25 H 1.09000 * 109.47100 * 299.99304 * 1 2 3 26 26 H 1.08997 * 109.47382 * 60.00229 * 1 2 3 27 27 H 1.09001 * 109.46784 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00304 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47483 * 276.38612 * 4 3 2 30 30 H 1.09002 * 109.47507 * 36.38741 * 4 3 2 31 31 H 1.09000 * 109.47034 * 156.39048 * 4 3 2 32 32 H 1.09002 * 109.50909 * 5.94133 * 8 7 5 33 33 H 1.09000 * 109.63092 * 245.71266 * 8 7 5 34 34 H 1.09000 * 109.50055 * 295.30205 * 9 8 7 35 35 H 1.08994 * 109.54054 * 175.19915 * 9 8 7 36 36 H 1.08999 * 109.43981 * 179.76788 * 10 9 8 37 37 H 1.08995 * 109.40841 * 59.85436 * 10 9 8 38 38 H 1.09005 * 111.01101 * 271.40118 * 12 11 10 39 39 H 1.08998 * 111.01311 * 35.27383 * 12 11 10 40 40 H 1.09007 * 110.35410 * 204.80089 * 13 12 11 41 41 H 1.08997 * 110.44868 * 82.56148 * 13 12 11 42 42 H 0.96997 * 120.00092 * 179.97438 * 18 17 15 43 43 H 1.09009 * 109.90650 * 239.09258 * 23 14 13 44 44 H 1.08999 * 109.91463 * 117.83042 * 23 14 13 45 45 H 1.08995 * 109.57657 * 112.64201 * 24 7 5 46 46 H 1.09005 * 109.57532 * 352.38523 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4184 2.4569 0.0006 5 6 3.6430 1.1519 0.0006 6 8 4.2509 0.1872 0.4234 7 7 4.3170 2.2210 -0.4674 8 6 5.7826 2.2983 -0.3553 9 6 6.3763 2.5554 -1.7438 10 6 5.7382 3.8131 -2.3415 11 6 4.2339 3.6145 -2.4654 12 6 3.5812 4.8555 -3.1135 13 6 2.3196 4.2361 -3.7676 14 7 2.7520 2.9090 -4.2441 15 6 2.1683 2.1951 -5.2564 16 1 1.1337 2.3690 -5.5131 17 6 2.9062 1.2476 -5.9526 18 7 2.2909 0.3225 -6.6582 19 14 4.7728 1.2856 -5.8880 20 1 5.2441 0.4904 -4.7257 21 1 5.3233 0.7066 -7.1398 22 1 5.2347 2.6898 -5.7472 23 6 3.9150 2.4795 -3.4509 24 6 3.6038 3.3379 -1.1057 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.0471 -0.9353 0.0004 29 1 1.1373 2.7146 -1.0205 30 1 0.5205 2.3577 0.6106 31 1 2.0523 3.2423 0.4121 32 1 6.1677 1.3574 0.0378 33 1 6.0561 3.1131 0.3151 34 1 6.1729 1.7018 -2.3903 35 1 7.4534 2.6991 -1.6588 36 1 6.1618 4.0010 -3.3281 37 1 5.9394 4.6650 -1.6920 38 1 3.3081 5.5927 -2.3584 39 1 4.2366 5.2937 -3.8662 40 1 1.9866 4.8495 -4.6049 41 1 1.5211 4.1334 -3.0328 42 1 2.8066 -0.3393 -7.1450 43 1 4.7683 2.3067 -4.1069 44 1 3.6746 1.5685 -2.9029 45 1 3.6817 4.2265 -0.4794 46 1 2.5543 3.0740 -1.2363 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054111462.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:31 Heat of formation + Delta-G solvation = 24.672086 kcal Electronic energy + Delta-G solvation = -25848.001993 eV Core-core repulsion = 22546.323077 eV Total energy + Delta-G solvation = -3301.678915 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.66205 -38.61339 -35.93782 -35.51367 -33.03890 -32.43674 -30.76140 -29.27613 -28.59630 -26.85475 -25.79920 -24.91079 -23.96410 -22.23806 -20.72440 -19.99443 -18.81714 -18.12010 -16.90926 -16.48271 -16.14611 -15.51567 -15.28005 -14.80194 -14.56065 -13.91243 -13.76533 -13.41000 -13.31808 -13.16300 -13.00307 -12.86749 -12.72535 -12.57185 -12.32716 -12.20610 -11.96486 -11.51325 -11.36115 -11.21538 -11.20082 -11.01516 -10.87822 -10.63374 -10.46188 -10.04853 -10.01036 -9.81418 -9.50254 -9.34314 -8.92194 -8.61553 -8.37815 -6.95956 -5.95048 -3.29356 1.60753 3.09457 3.36029 3.44649 3.45013 3.49167 4.54015 4.58483 4.77170 4.90335 4.93123 5.00603 5.09663 5.14149 5.25472 5.28833 5.32135 5.39938 5.43365 5.53243 5.55128 5.63655 5.70668 5.76192 5.79619 5.82436 5.85155 5.93832 5.96811 6.00354 6.05037 6.17154 6.20969 6.27372 6.46145 6.48149 6.54069 6.61280 6.64483 6.72259 6.75860 6.83058 7.58752 7.78777 8.32837 8.36658 8.84757 9.69566 10.21131 11.21811 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.012610 B = 0.007809 C = 0.006533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.959620 B = 3584.820480 C = 4284.636247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.073 4.073 3 C -0.188 4.188 4 C -0.120 4.120 5 C 0.562 3.438 6 O -0.553 6.553 7 N -0.604 5.604 8 C 0.114 3.886 9 C -0.140 4.140 10 C -0.104 4.104 11 C -0.088 4.088 12 C -0.124 4.124 13 C 0.131 3.869 14 N -0.610 5.610 15 C -0.241 4.241 16 H 0.090 0.910 17 C 0.025 3.975 18 N -0.910 5.910 19 Si 0.891 3.109 20 H -0.288 1.288 21 H -0.305 1.305 22 H -0.276 1.276 23 C 0.134 3.866 24 C 0.095 3.905 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.121 0.879 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.026 0.974 42 H 0.263 0.737 43 H 0.029 0.971 44 H 0.035 0.965 45 H 0.064 0.936 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.511 8.286 14.604 16.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.093 4.093 3 C -0.191 4.191 4 C -0.176 4.176 5 C 0.353 3.647 6 O -0.432 6.432 7 N -0.336 5.336 8 C -0.008 4.008 9 C -0.178 4.178 10 C -0.141 4.141 11 C -0.090 4.090 12 C -0.163 4.163 13 C 0.006 3.994 14 N -0.337 5.337 15 C -0.369 4.369 16 H 0.108 0.892 17 C -0.174 4.174 18 N -0.553 5.553 19 Si 0.724 3.276 20 H -0.216 1.216 21 H -0.234 1.234 22 H -0.202 1.202 23 C 0.010 3.990 24 C -0.026 4.026 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.139 0.861 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.043 0.957 42 H 0.073 0.927 43 H 0.046 0.954 44 H 0.053 0.947 45 H 0.082 0.918 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.799 7.589 14.650 16.597 hybrid contribution 1.330 -0.081 -0.291 1.364 sum 3.129 7.508 14.360 16.503 Atomic orbital electron populations 1.20970 0.92039 1.02980 1.02592 1.23466 0.96370 0.97568 0.91859 1.21271 0.92507 0.96833 1.08510 1.21190 0.99660 0.94315 1.02414 1.18453 0.87868 0.81559 0.76844 1.90735 1.70194 1.33523 1.48795 1.47987 1.07146 1.19848 1.58582 1.21570 0.79686 1.02675 0.96888 1.21980 0.99682 0.99332 0.96776 1.21416 0.94349 0.97209 1.01167 1.21405 0.95117 0.97323 0.95110 1.22768 0.98577 0.95565 0.99371 1.21718 0.93906 0.87151 0.96670 1.44790 1.34614 1.15985 1.38301 1.18610 0.95036 1.15491 1.07724 0.89230 1.25093 0.97487 0.97489 0.97325 1.69787 1.35048 1.15779 1.34718 0.86813 0.88042 0.77332 0.75432 1.21591 1.23361 1.20227 1.21593 0.91115 0.94761 0.91531 1.22628 0.99601 0.88559 0.91844 0.90972 0.90261 0.91551 0.86086 0.89580 0.91450 0.91308 0.89281 0.91688 0.91222 0.90853 0.91555 0.91771 0.91375 0.91073 0.93288 0.95665 0.92731 0.95426 0.94683 0.91774 0.85982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 8.99 36.01 0.32 -1.12 16 2 C -0.07 -1.06 9.82 -36.12 -0.35 -1.41 16 3 C -0.19 -2.86 5.67 -102.85 -0.58 -3.44 16 4 C -0.12 -1.42 7.37 36.01 0.27 -1.15 16 5 C 0.56 9.90 7.48 -12.67 -0.09 9.80 16 6 O -0.55 -11.30 15.90 5.27 0.08 -11.22 16 7 N -0.60 -9.46 2.61 -174.31 -0.45 -9.91 16 8 C 0.11 1.60 6.43 -3.57 -0.02 1.58 16 9 C -0.14 -2.00 5.92 -26.54 -0.16 -2.16 16 10 C -0.10 -1.48 4.52 -27.03 -0.12 -1.60 16 11 C -0.09 -1.42 0.54 -154.09 -0.08 -1.51 16 12 C -0.12 -1.85 5.99 -24.89 -0.15 -2.00 16 13 C 0.13 2.41 6.94 -2.44 -0.02 2.39 16 14 N -0.61 -14.41 3.15 -170.23 -0.54 -14.94 16 15 C -0.24 -6.80 10.58 -15.06 -0.16 -6.96 16 16 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 17 C 0.02 0.74 5.46 -17.43 -0.10 0.64 16 18 N -0.91 -28.37 13.97 55.49 0.78 -27.60 16 19 Si 0.89 23.57 24.40 -169.99 -4.15 19.42 16 20 H -0.29 -7.63 7.07 56.52 0.40 -7.23 16 21 H -0.31 -8.15 7.11 56.52 0.40 -7.75 16 22 H -0.28 -7.04 6.70 56.52 0.38 -6.66 16 23 C 0.13 2.94 3.76 -3.32 -0.01 2.93 16 24 C 0.10 1.35 3.13 -4.03 -0.01 1.34 16 25 H 0.07 0.66 7.42 -51.93 -0.39 0.28 16 26 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.12 1.88 7.69 -52.49 -0.40 1.48 16 29 H 0.09 1.10 6.78 -51.93 -0.35 0.75 16 30 H 0.07 0.66 6.75 -51.93 -0.35 0.31 16 31 H 0.07 0.74 6.15 -51.93 -0.32 0.42 16 32 H 0.09 1.35 7.02 -51.93 -0.36 0.98 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.23 7.28 -51.93 -0.38 0.86 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.79 7.98 -51.93 -0.41 0.37 16 39 H 0.07 1.09 8.02 -51.93 -0.42 0.67 16 40 H 0.05 0.91 8.14 -51.92 -0.42 0.48 16 41 H 0.03 0.43 7.91 -51.93 -0.41 0.02 16 42 H 0.26 7.83 8.31 -40.82 -0.34 7.50 16 43 H 0.03 0.68 2.51 -51.92 -0.13 0.55 16 44 H 0.04 0.85 7.55 -51.93 -0.39 0.46 16 45 H 0.06 0.74 7.94 -51.93 -0.41 0.32 16 46 H 0.12 1.77 2.71 -53.09 -0.14 1.63 16 LS Contribution 340.49 15.07 5.13 5.13 Total: -1.00 -33.88 340.49 -7.83 -41.72 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.41 Total: 0.08 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -1.27 Total: -2.68 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.22 Total: -52.45 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -4.15 Total: 19.42 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.88 -7.83 -41.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054111462.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.389 kcal (2) G-P(sol) polarization free energy of solvation -33.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds