Wall clock time and date at job start Tue Mar 31 2020 08:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32999 * 120.00131 * 2 1 4 4 C 1.50702 * 119.99867 * 179.97438 * 3 2 1 5 5 C 1.47101 * 119.99650 * 359.97438 * 3 2 1 6 6 O 1.21607 * 120.00280 * 333.49878 * 5 3 2 7 7 N 1.34778 * 119.99679 * 153.50442 * 5 3 2 8 8 C 1.46947 * 120.71803 * 353.94996 * 7 5 3 9 9 C 1.53198 * 108.89968 * 234.30877 * 8 7 5 10 10 C 1.53178 * 109.27283 * 304.61156 * 9 8 7 11 11 C 1.52060 * 109.73178 * 59.93449 * 10 9 8 12 12 C 1.54584 * 110.68196 * 64.30779 * 11 10 9 13 13 C 1.54471 * 102.75920 * 152.61504 * 12 11 10 14 14 N 1.47082 * 107.42811 * 338.69320 * 13 12 11 15 15 C 1.36934 * 125.62789 * 178.94708 * 14 13 12 16 16 H 1.07999 * 120.00373 * 179.97438 * 15 14 13 17 17 C 1.38816 * 119.99896 * 359.97438 * 15 14 13 18 18 N 1.31615 * 120.00053 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99568 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47343 * 90.00339 * 19 17 15 21 21 H 1.48501 * 109.46858 * 210.00014 * 19 17 15 22 22 H 1.48498 * 109.47494 * 329.99869 * 19 17 15 23 23 C 1.47580 * 108.74190 * 358.93131 * 14 13 12 24 24 C 1.47096 * 120.71905 * 173.92818 * 7 5 3 25 25 H 1.09002 * 109.46869 * 60.00399 * 1 2 3 26 26 H 1.08997 * 109.47457 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47317 * 300.00245 * 1 2 3 28 28 H 1.08002 * 120.00147 * 179.97438 * 2 1 3 29 29 H 1.09005 * 109.46575 * 274.24583 * 4 3 2 30 30 H 1.09004 * 109.47086 * 34.24436 * 4 3 2 31 31 H 1.08995 * 109.46720 * 154.24761 * 4 3 2 32 32 H 1.08993 * 109.56612 * 114.48146 * 8 7 5 33 33 H 1.09003 * 109.66568 * 354.18526 * 8 7 5 34 34 H 1.09002 * 109.49840 * 184.67206 * 9 8 7 35 35 H 1.08998 * 109.53664 * 64.57752 * 9 8 7 36 36 H 1.08996 * 109.43343 * 299.85030 * 10 9 8 37 37 H 1.09008 * 109.37994 * 179.97438 * 10 9 8 38 38 H 1.08990 * 110.70843 * 34.34256 * 12 11 10 39 39 H 1.08996 * 110.85646 * 270.95599 * 12 11 10 40 40 H 1.08995 * 109.87746 * 219.19331 * 13 12 11 41 41 H 1.09003 * 109.87443 * 98.19380 * 13 12 11 42 42 H 0.97000 * 119.99818 * 180.02562 * 18 17 15 43 43 H 1.08997 * 110.37263 * 142.11601 * 23 14 13 44 44 H 1.08995 * 110.37081 * 264.46487 * 23 14 13 45 45 H 1.08995 * 109.56704 * 7.97366 * 24 7 5 46 46 H 1.09001 * 109.56889 * 247.61678 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1517 0.0006 5 6 1.4364 2.4257 -0.0006 6 8 0.3164 2.4809 -0.4709 7 7 2.0040 3.5317 0.5201 8 6 3.2993 3.4569 1.2100 9 6 3.1535 4.0688 2.6069 10 6 2.6077 5.4944 2.4800 11 6 1.2506 5.4654 1.7946 12 6 0.2170 4.7108 2.6618 13 6 -1.1204 5.3575 2.2386 14 7 -0.8090 6.6700 1.6522 15 6 -1.7223 7.5497 1.1355 16 1 -1.3919 8.4930 0.7263 17 6 -3.0730 7.2291 1.1377 18 7 -3.4756 6.0794 1.6359 19 14 -4.3189 8.4297 0.4334 20 1 -4.5100 8.1531 -1.0130 21 1 -5.6139 8.2719 1.1428 22 1 -3.8234 9.8183 0.6107 23 6 0.6501 6.8823 1.7131 24 6 1.3404 4.8398 0.4097 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 2.0470 -0.9353 0.0004 29 1 4.0419 1.0758 1.0257 30 1 4.0425 0.3020 -0.5774 31 1 4.0425 2.0772 -0.4460 32 1 4.0468 4.0128 0.6442 33 1 3.6083 2.4154 1.2983 34 1 4.1271 4.0941 3.0965 35 1 2.4642 3.4664 3.1986 36 1 3.2990 6.0962 1.8902 37 1 2.5028 5.9313 3.4732 38 1 0.4080 4.8777 3.7217 39 1 0.2207 3.6455 2.4308 40 1 -1.7630 5.4839 3.1099 41 1 -1.6180 4.7299 1.4992 42 1 -4.4194 5.8553 1.6370 43 1 0.9974 7.3905 0.8135 44 1 0.9131 7.4577 2.6006 45 1 0.3378 4.7074 0.0033 46 1 1.9197 5.4888 -0.2471 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054111463.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:41 Heat of formation + Delta-G solvation = 20.214491 kcal Electronic energy + Delta-G solvation = -25270.431680 eV Core-core repulsion = 21968.559469 eV Total energy + Delta-G solvation = -3301.872211 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -40.48730 -38.46503 -35.91624 -35.09033 -33.07774 -31.81061 -30.57191 -29.44760 -28.53594 -26.21520 -25.63220 -24.40238 -23.55202 -21.95236 -21.43330 -20.03157 -18.44815 -18.01343 -16.64430 -16.24510 -15.42566 -15.29280 -15.05695 -14.59082 -14.32165 -13.79363 -13.70770 -13.58596 -13.35916 -13.13424 -13.01899 -12.61462 -12.51037 -12.16119 -12.02880 -11.89101 -11.77387 -11.58590 -11.48438 -10.96415 -10.86856 -10.78182 -10.53442 -10.46121 -10.05656 -9.89732 -9.83013 -9.59042 -9.48851 -9.28842 -8.98856 -8.48890 -8.26809 -6.71598 -5.60086 -2.93629 1.49370 3.20658 3.42852 3.46937 3.51185 3.53372 4.57367 4.58233 4.76737 4.82044 5.04055 5.09489 5.15296 5.25260 5.29954 5.33746 5.42194 5.49196 5.61791 5.62771 5.71645 5.79086 5.79593 5.91369 5.92939 5.98356 6.06680 6.11256 6.12757 6.22021 6.33907 6.40669 6.47603 6.52231 6.59535 6.63155 6.68945 6.85490 6.89015 6.99291 7.67123 7.72739 7.77922 7.96815 8.37349 8.49096 9.32591 9.93286 10.60005 11.51239 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.018655 B = 0.005097 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.612930 B = 5492.374080 C = 6458.900066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.076 4.076 3 C -0.195 4.195 4 C -0.114 4.114 5 C 0.549 3.451 6 O -0.527 6.527 7 N -0.603 5.603 8 C 0.079 3.921 9 C -0.134 4.134 10 C -0.102 4.102 11 C -0.085 4.085 12 C -0.127 4.127 13 C 0.179 3.821 14 N -0.604 5.604 15 C -0.228 4.228 16 H 0.076 0.924 17 C -0.007 4.007 18 N -0.919 5.919 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.148 3.852 24 C 0.134 3.866 25 H 0.092 0.908 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.121 0.879 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.038 0.962 41 H 0.047 0.953 42 H 0.251 0.749 43 H 0.037 0.963 44 H 0.021 0.979 45 H 0.104 0.896 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.681 -10.826 0.320 20.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.095 4.095 3 C -0.198 4.198 4 C -0.170 4.170 5 C 0.339 3.661 6 O -0.405 6.405 7 N -0.336 5.336 8 C -0.044 4.044 9 C -0.172 4.172 10 C -0.140 4.140 11 C -0.087 4.087 12 C -0.165 4.165 13 C 0.055 3.945 14 N -0.330 5.330 15 C -0.357 4.357 16 H 0.094 0.906 17 C -0.204 4.204 18 N -0.567 5.567 19 Si 0.740 3.260 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.208 1.208 23 C 0.021 3.979 24 C 0.012 3.988 25 H 0.110 0.890 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.139 0.861 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.126 0.874 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.038 0.962 45 H 0.122 0.878 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 16.828 -10.763 0.030 19.975 hybrid contribution -0.597 0.697 -0.219 0.944 sum 16.231 -10.065 -0.189 19.099 Atomic orbital electron populations 1.21056 0.91791 1.01376 1.04636 1.23518 0.97200 0.96384 0.92447 1.21478 0.96177 0.93533 1.08603 1.21090 0.91368 1.02964 1.01550 1.18435 0.85665 0.83642 0.78395 1.90824 1.18425 1.84958 1.46278 1.48041 1.21435 1.08229 1.55873 1.22571 0.85211 1.03707 0.92890 1.21944 1.01104 0.97473 0.96691 1.21320 0.96092 0.95903 1.00659 1.21432 0.94429 0.97805 0.95018 1.22802 0.97418 0.98669 0.97631 1.21146 0.90383 0.85731 0.97267 1.44508 0.99890 1.17691 1.70946 1.19028 0.86731 0.97463 1.32448 0.90572 1.24789 0.96922 0.97342 1.01310 1.69984 1.14352 1.21812 1.50513 0.86154 0.81116 0.80139 0.78561 1.21651 1.21763 1.20782 1.21420 0.86135 0.92321 0.97985 1.21405 0.99672 0.81605 0.96088 0.88983 0.92796 0.90939 0.86148 0.90469 0.91736 0.91067 0.91946 0.87421 0.91311 0.91401 0.92261 0.91717 0.92913 0.92555 0.94424 0.93447 0.93859 0.94486 0.96189 0.87778 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 8.54 36.00 0.31 -1.43 16 2 C -0.08 -0.85 9.96 -36.13 -0.36 -1.21 16 3 C -0.19 -2.37 5.61 -102.84 -0.58 -2.95 16 4 C -0.11 -0.93 8.01 36.01 0.29 -0.64 16 5 C 0.55 9.01 7.22 -12.66 -0.09 8.92 16 6 O -0.53 -10.93 13.29 5.27 0.07 -10.86 16 7 N -0.60 -9.10 2.60 -174.59 -0.45 -9.55 16 8 C 0.08 0.85 4.79 -3.70 -0.02 0.83 16 9 C -0.13 -1.48 5.92 -26.54 -0.16 -1.64 16 10 C -0.10 -1.37 4.64 -27.12 -0.13 -1.49 16 11 C -0.09 -1.50 0.56 -153.97 -0.09 -1.58 16 12 C -0.13 -2.53 4.92 -25.13 -0.12 -2.66 16 13 C 0.18 4.62 4.95 -2.95 -0.01 4.61 16 14 N -0.60 -15.93 3.39 -170.31 -0.58 -16.50 16 15 C -0.23 -6.58 10.28 -15.06 -0.15 -6.73 16 16 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 17 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 18 N -0.92 -28.29 10.30 55.49 0.57 -27.71 16 19 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 23 C 0.15 3.11 6.15 -2.87 -0.02 3.10 16 24 C 0.13 2.41 5.08 -4.11 -0.02 2.39 16 25 H 0.09 1.43 6.73 -51.93 -0.35 1.08 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 1.09 7.94 -51.93 -0.41 0.68 16 28 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 29 H 0.08 0.50 6.56 -51.93 -0.34 0.16 16 30 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 31 H 0.07 0.59 6.65 -51.93 -0.35 0.24 16 32 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 33 H 0.11 0.95 3.08 -51.98 -0.16 0.79 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.84 7.42 -51.93 -0.39 0.45 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.87 8.10 -51.92 -0.42 0.45 16 38 H 0.05 0.99 7.99 -51.93 -0.41 0.58 16 39 H 0.06 1.13 7.70 -51.93 -0.40 0.73 16 40 H 0.04 1.07 7.50 -51.93 -0.39 0.68 16 41 H 0.05 1.40 7.37 -51.93 -0.38 1.01 16 42 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.04 0.76 8.01 -51.93 -0.42 0.34 16 44 H 0.02 0.42 8.00 -51.93 -0.42 0.01 16 45 H 0.10 2.37 6.61 -51.93 -0.34 2.03 16 46 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 LS Contribution 345.17 15.07 5.20 5.20 Total: -1.00 -33.56 345.17 -9.13 -42.69 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -7.67 Total: -0.38 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -1.25 Total: -0.80 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -0.46 Total: -53.77 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.07 Total: -10.86 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.56 -9.13 -42.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054111463.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.903 kcal (2) G-P(sol) polarization free energy of solvation -33.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds