Wall clock time and date at job start Tue Mar 31 2020 08:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32991 * 120.00125 * 2 1 4 4 C 1.50704 * 120.00087 * 359.97438 * 3 2 1 5 5 C 1.47097 * 120.00218 * 179.97438 * 3 2 1 6 6 O 1.21615 * 120.00327 * 261.58829 * 5 3 2 7 7 N 1.34781 * 119.99993 * 81.58281 * 5 3 2 8 8 C 1.46932 * 120.70023 * 354.85503 * 7 5 3 9 9 C 1.53191 * 108.91720 * 125.85029 * 8 7 5 10 10 C 1.53168 * 109.27337 * 55.23796 * 9 8 7 11 11 C 1.52235 * 109.62336 * 299.83568 * 10 9 8 12 12 C 1.54503 * 110.25449 * 297.03412 * 11 10 9 13 13 C 1.55024 * 101.52345 * 276.23902 * 12 11 10 14 14 N 1.47482 * 104.90220 * 323.63844 * 13 12 11 15 15 C 1.36934 * 125.66193 * 204.02747 * 14 13 12 16 16 H 1.08001 * 120.00390 * 179.97438 * 15 14 13 17 17 C 1.38820 * 120.00203 * 359.97438 * 15 14 13 18 18 N 1.31616 * 119.99283 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00034 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47386 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46869 * 119.99935 * 19 17 15 22 22 H 1.48495 * 109.46965 * 239.99961 * 19 17 15 23 23 C 1.47188 * 108.67483 * 24.01373 * 14 13 12 24 24 C 1.47081 * 120.70303 * 174.87357 * 7 5 3 25 25 H 1.09004 * 109.47362 * 60.00224 * 1 2 3 26 26 H 1.08998 * 109.47531 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47387 * 300.00079 * 1 2 3 28 28 H 1.08006 * 119.99929 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.46773 * 275.53049 * 4 3 2 30 30 H 1.09002 * 109.46738 * 35.53016 * 4 3 2 31 31 H 1.08999 * 109.46778 * 155.52540 * 4 3 2 32 32 H 1.09004 * 109.56231 * 6.02137 * 8 7 5 33 33 H 1.08999 * 109.56371 * 245.68018 * 8 7 5 34 34 H 1.09000 * 109.50730 * 295.29527 * 9 8 7 35 35 H 1.09003 * 109.50493 * 175.17283 * 9 8 7 36 36 H 1.08993 * 109.44005 * 59.87610 * 10 9 8 37 37 H 1.08998 * 109.43663 * 179.80065 * 10 9 8 38 38 H 1.09004 * 111.01111 * 34.29974 * 12 11 10 39 39 H 1.08995 * 111.01435 * 158.17434 * 12 11 10 40 40 H 1.08997 * 110.35040 * 204.78603 * 13 12 11 41 41 H 1.09005 * 110.44417 * 82.54466 * 13 12 11 42 42 H 0.97001 * 119.99592 * 180.02562 * 18 17 15 43 43 H 1.09003 * 109.90653 * 239.12522 * 23 14 13 44 44 H 1.08999 * 109.91182 * 117.85763 * 23 14 13 45 45 H 1.09002 * 109.57728 * 352.23240 * 24 7 5 46 46 H 1.08995 * 109.57436 * 112.61640 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 1.4184 2.4569 -0.0006 5 6 3.6429 1.1517 0.0006 6 8 4.2506 1.3061 1.0426 7 7 4.3172 0.9806 -1.1538 8 6 3.6031 0.6811 -2.4024 9 6 4.0093 1.7068 -3.4653 10 6 5.5340 1.7057 -3.6122 11 6 6.1760 2.0757 -2.2824 12 6 5.7733 3.5106 -1.8748 13 6 6.8051 4.3575 -2.6631 14 7 8.0500 3.5676 -2.6282 15 6 9.3171 4.0680 -2.7671 16 1 10.1676 3.4037 -2.7261 17 6 9.5085 5.4293 -2.9606 18 7 8.4720 6.2389 -3.0101 19 14 11.2369 6.1119 -3.1494 20 1 12.2201 5.0029 -3.0564 21 1 11.3650 6.7766 -4.4712 22 1 11.4998 7.0988 -2.0714 23 6 7.7045 2.1523 -2.4189 24 6 5.7836 1.0894 -1.1901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 2.0470 -0.9354 0.0004 29 1 1.1514 2.7218 -1.0237 30 1 0.5123 2.3535 0.5963 31 1 2.0467 3.2392 0.4252 32 1 2.5282 0.7393 -2.2311 33 1 3.8665 -0.3205 -2.7423 34 1 3.6737 2.6983 -3.1614 35 1 3.5517 1.4435 -4.4189 36 1 5.8687 0.7131 -3.9131 37 1 5.8258 2.4323 -4.3706 38 1 4.7560 3.7367 -2.1945 39 1 5.8856 3.6579 -0.8007 40 1 6.9541 5.3218 -2.1774 41 1 6.4746 4.4991 -3.6922 42 1 8.6057 7.1901 -3.1457 43 1 8.1773 1.7857 -1.5077 44 1 8.0310 1.5601 -3.2737 45 1 6.1473 1.4472 -0.2269 46 1 6.2169 0.1130 -1.4064 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054111464.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:48 Heat of formation + Delta-G solvation = 0.558936 kcal Electronic energy + Delta-G solvation = -24777.426844 eV Core-core repulsion = 21474.702304 eV Total energy + Delta-G solvation = -3302.724540 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.48479 -38.53179 -35.85483 -35.71095 -32.95294 -31.83686 -30.22101 -29.48329 -28.59485 -26.75516 -25.63740 -25.03540 -23.52990 -22.24038 -20.89521 -20.06387 -18.27328 -18.04523 -16.88169 -16.76379 -16.04914 -15.25128 -15.06952 -14.66927 -14.28551 -14.04688 -13.89190 -13.65032 -13.28217 -13.26520 -12.97094 -12.75896 -12.50217 -12.45017 -12.26092 -12.09086 -11.94115 -11.55212 -11.51148 -11.13444 -10.97393 -10.87995 -10.73302 -10.51912 -10.07327 -10.05121 -9.95901 -9.71210 -9.64322 -9.41631 -9.08211 -8.60664 -8.45196 -6.78345 -5.61207 -3.02420 1.62212 2.64024 3.13112 3.42056 3.47525 3.50027 4.39941 4.52356 4.73955 4.82532 4.97578 5.01765 5.09152 5.15605 5.19402 5.28249 5.34667 5.42198 5.48349 5.49999 5.56908 5.61436 5.65373 5.73553 5.77972 5.89436 5.94838 5.97284 6.03446 6.14626 6.22385 6.32384 6.41031 6.42574 6.49056 6.55689 6.66264 6.76917 6.86021 6.98143 7.47947 7.57339 7.67620 7.91003 8.22238 8.40869 9.26360 9.87325 10.53055 11.42604 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.030935 B = 0.003758 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.911309 B = 7449.426176 C = 7571.602458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.130 4.130 3 C -0.154 4.154 4 C -0.107 4.107 5 C 0.555 3.445 6 O -0.539 6.539 7 N -0.600 5.600 8 C 0.109 3.891 9 C -0.136 4.136 10 C -0.099 4.099 11 C -0.083 4.083 12 C -0.131 4.131 13 C 0.155 3.845 14 N -0.603 5.603 15 C -0.220 4.220 16 H 0.077 0.923 17 C -0.013 4.013 18 N -0.922 5.922 19 Si 0.913 3.087 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.149 3.851 24 C 0.129 3.871 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.112 0.888 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.103 0.897 41 H 0.010 0.990 42 H 0.250 0.750 43 H 0.024 0.976 44 H 0.023 0.977 45 H 0.092 0.908 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.277 -12.439 0.890 21.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.149 4.149 3 C -0.157 4.157 4 C -0.164 4.164 5 C 0.343 3.657 6 O -0.416 6.416 7 N -0.332 5.332 8 C -0.014 4.014 9 C -0.174 4.174 10 C -0.137 4.137 11 C -0.085 4.085 12 C -0.169 4.169 13 C 0.031 3.969 14 N -0.329 5.329 15 C -0.348 4.348 16 H 0.095 0.905 17 C -0.208 4.208 18 N -0.571 5.571 19 Si 0.744 3.256 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.023 3.977 24 C 0.007 3.993 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.130 0.870 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.120 0.880 41 H 0.028 0.972 42 H 0.061 0.939 43 H 0.042 0.958 44 H 0.041 0.959 45 H 0.111 0.889 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.819 -12.165 1.412 20.805 hybrid contribution 0.971 0.292 -0.268 1.049 sum -15.848 -11.872 1.143 19.835 Atomic orbital electron populations 1.20856 0.92137 1.02562 1.02347 1.23193 0.96465 0.96681 0.98544 1.21450 0.92881 0.97176 1.04184 1.20715 0.99581 0.93655 1.02455 1.18547 0.87639 0.76063 0.83429 1.90814 1.69821 1.49653 1.31307 1.48135 1.07651 1.69510 1.07890 1.21740 0.96883 0.98574 0.84181 1.22007 0.97409 0.99882 0.98133 1.21341 0.93615 1.01474 0.97267 1.21321 0.96807 0.96102 0.94239 1.23015 0.99283 0.94203 1.00404 1.21908 0.82713 0.96286 0.96021 1.44535 1.02788 1.00504 1.85051 1.19130 0.82801 0.91387 1.41510 0.90496 1.24780 0.97514 0.96010 1.02476 1.69829 1.27224 1.03076 1.56950 0.86006 0.83499 0.78801 0.77264 1.20558 1.21839 1.21782 1.21156 0.90517 0.88463 0.97604 1.21553 0.78287 0.98814 1.00636 0.91102 0.91808 0.91104 0.86958 0.90731 0.90914 0.91301 0.89929 0.91556 0.90933 0.91040 0.92341 0.90779 0.92460 0.92443 0.87961 0.97187 0.93888 0.95820 0.95883 0.88941 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 8.98 36.00 0.32 -0.45 16 2 C -0.13 -1.18 9.31 -36.13 -0.34 -1.52 16 3 C -0.15 -1.75 4.04 -102.85 -0.42 -2.17 16 4 C -0.11 -1.04 9.45 36.01 0.34 -0.69 16 5 C 0.56 8.44 7.05 -12.66 -0.09 8.35 16 6 O -0.54 -10.50 16.56 5.26 0.09 -10.41 16 7 N -0.60 -8.34 2.82 -174.57 -0.49 -8.84 16 8 C 0.11 1.16 6.27 -3.71 -0.02 1.14 16 9 C -0.14 -1.59 5.90 -26.55 -0.16 -1.74 16 10 C -0.10 -1.46 4.55 -27.03 -0.12 -1.59 16 11 C -0.08 -1.45 0.55 -154.13 -0.09 -1.53 16 12 C -0.13 -2.59 5.73 -24.87 -0.14 -2.73 16 13 C 0.16 3.83 5.57 -2.44 -0.01 3.82 16 14 N -0.60 -15.66 3.40 -170.24 -0.58 -16.24 16 15 C -0.22 -6.23 10.28 -15.06 -0.15 -6.39 16 16 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 17 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 18 N -0.92 -27.29 10.09 55.49 0.56 -26.73 16 19 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 C 0.15 3.14 6.43 -3.33 -0.02 3.12 16 24 C 0.13 2.05 4.96 -4.08 -0.02 2.03 16 25 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.43 7.41 -51.93 -0.38 0.05 16 28 H 0.11 1.02 8.05 -52.48 -0.42 0.59 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.57 6.72 -51.93 -0.35 0.22 16 31 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 32 H 0.08 0.74 5.90 -51.93 -0.31 0.44 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.93 6.22 -51.93 -0.32 0.60 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.26 7.49 -51.93 -0.39 0.87 16 38 H 0.06 1.03 6.00 -51.93 -0.31 0.72 16 39 H 0.06 1.23 7.90 -51.93 -0.41 0.82 16 40 H 0.10 2.88 5.88 -51.93 -0.31 2.58 16 41 H 0.01 0.26 7.76 -51.93 -0.40 -0.14 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.02 0.51 7.80 -51.93 -0.40 0.10 16 44 H 0.02 0.48 7.83 -51.93 -0.41 0.07 16 45 H 0.09 1.70 6.90 -51.93 -0.36 1.34 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 351.32 15.07 5.29 5.29 Total: -1.00 -32.76 351.32 -8.86 -41.63 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -7.70 Total: -1.33 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -1.01 Total: -0.79 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.51 Total: -51.81 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.76 -8.86 -41.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054111464.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.188 kcal (2) G-P(sol) polarization free energy of solvation -32.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds