Wall clock time and date at job start Tue Mar 31 2020 08:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47337 * 2 1 4 4 C 1.53003 * 109.47370 * 179.97438 * 3 2 1 5 5 H 1.09004 * 115.55996 * 29.30388 * 4 3 2 6 6 C 1.53069 * 117.49609 * 243.60066 * 4 3 2 7 7 C 1.52998 * 117.49984 * 174.99598 * 4 3 2 8 8 H 1.08994 * 117.50351 * 359.97438 * 7 4 3 9 9 C 1.50706 * 117.49699 * 214.97763 * 7 4 3 10 10 O 1.21278 * 119.99791 * 0.09107 * 9 7 4 11 11 N 1.34780 * 119.99605 * 180.09189 * 9 7 4 12 12 C 1.47398 * 125.59071 * 0.02562 * 11 9 7 13 13 C 1.54852 * 104.90801 * 204.66979 * 12 11 9 14 14 C 1.55122 * 101.77711 * 322.76449 * 13 12 11 15 15 H 1.09003 * 113.46095 * 159.24186 * 14 13 12 16 16 C 1.54046 * 108.25950 * 286.08741 * 14 13 12 17 17 N 1.46701 * 106.83076 * 135.80820 * 16 14 13 18 18 C 1.36933 * 125.32426 * 161.84064 * 17 16 14 19 19 H 1.08000 * 119.99992 * 0.02562 * 18 17 16 20 20 C 1.38807 * 119.99989 * 180.02562 * 18 17 16 21 21 N 1.31620 * 120.00293 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00011 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47217 * 59.99715 * 22 20 18 24 24 H 1.48501 * 109.47294 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46876 * 299.99962 * 22 20 18 26 26 C 1.46639 * 109.35402 * 341.81992 * 17 16 14 27 27 C 1.46997 * 125.73311 * 180.02562 * 11 9 7 28 28 H 1.08999 * 111.81624 * 55.74334 * 27 11 9 29 29 H 1.08997 * 109.47399 * 300.00477 * 1 2 3 30 30 H 1.09004 * 109.46371 * 60.00455 * 1 2 3 31 31 H 1.08996 * 109.47264 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47288 * 239.99011 * 2 1 3 33 33 H 1.09004 * 109.46371 * 119.99545 * 2 1 3 34 34 H 1.09000 * 109.47739 * 59.99287 * 3 2 1 35 35 H 1.09004 * 109.47019 * 299.99148 * 3 2 1 36 36 H 1.08996 * 117.51609 * 145.03348 * 6 4 3 37 37 H 1.09002 * 117.51457 * 359.97438 * 6 4 3 38 38 H 1.09002 * 110.37082 * 85.78215 * 12 11 9 39 39 H 1.08999 * 110.37114 * 323.55832 * 12 11 9 40 40 H 1.09005 * 110.96855 * 80.88340 * 13 12 11 41 41 H 1.08997 * 110.96833 * 204.63985 * 13 12 11 42 42 H 1.09000 * 109.98600 * 255.15202 * 16 14 13 43 43 H 1.09004 * 109.98711 * 16.42386 * 16 14 13 44 44 H 0.97000 * 120.00176 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.75514 * 120.92740 * 26 17 16 46 46 H 1.08996 * 109.75770 * 241.63165 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 4.0406 0.5848 -0.4803 6 6 4.2762 2.0463 1.2170 7 6 4.2766 2.7943 -0.1176 8 1 3.6515 3.6838 -0.1963 9 6 5.5698 2.8384 -0.8902 10 8 6.0116 1.8261 -1.3912 11 7 6.2352 4.0027 -1.0244 12 6 5.8131 5.3010 -0.4686 13 6 6.4858 6.3604 -1.3758 14 6 7.8575 5.6990 -1.6714 15 1 8.3462 6.0930 -2.5625 16 6 8.7250 5.7988 -0.4023 17 7 9.3652 4.4914 -0.2215 18 6 10.4652 4.2494 0.5574 19 1 10.9308 5.0584 1.1006 20 6 10.9818 2.9642 0.6487 21 7 10.4147 1.9783 -0.0137 22 14 12.4819 2.6339 1.7118 23 1 12.1818 3.0009 3.1190 24 1 12.8323 1.1927 1.6394 25 1 13.6245 3.4459 1.2214 26 6 8.6429 3.4840 -1.0049 27 6 7.5010 4.1897 -1.7480 28 1 7.4311 3.8493 -2.7811 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5140 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6768 1.9562 -0.8901 36 1 5.2113 1.5861 1.5363 37 1 3.6509 2.4439 2.0164 38 1 6.1614 5.4052 0.5590 39 1 4.7283 5.3978 -0.5124 40 1 5.9168 6.5055 -2.2942 41 1 6.6140 7.3038 -0.8450 42 1 9.4838 6.5709 -0.5295 43 1 8.0990 6.0303 0.4596 44 1 10.7759 1.0803 0.0499 45 1 9.3196 3.0210 -1.7231 46 1 8.2347 2.7231 -0.3397 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076220753.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:17 Heat of formation + Delta-G solvation = 9.490498 kcal Electronic energy + Delta-G solvation = -24278.883714 eV Core-core repulsion = 20976.546476 eV Total energy + Delta-G solvation = -3302.337238 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 17.72 seconds Orbital eigenvalues (eV) -40.21832 -38.56830 -36.63522 -34.72359 -33.89486 -32.08672 -30.81304 -28.92737 -27.58030 -26.37169 -24.70228 -23.99959 -22.19533 -21.87956 -20.73327 -20.28182 -19.42555 -18.27451 -17.17546 -16.63285 -15.83050 -15.29547 -14.97474 -14.70458 -14.55285 -13.92254 -13.77251 -13.53258 -13.27364 -13.13662 -12.71757 -12.65950 -12.25013 -12.13502 -11.91115 -11.79112 -11.51055 -11.39722 -11.10900 -11.05372 -10.96261 -10.92748 -10.69155 -10.44519 -10.21718 -10.15341 -10.11923 -9.91704 -9.82587 -9.64951 -9.26730 -8.53981 -8.08320 -6.76347 -5.62770 -2.98997 2.94045 3.33656 3.43744 3.47461 3.49977 3.99599 4.50222 4.53551 4.74574 4.81297 4.85206 4.90162 5.03458 5.06183 5.14729 5.21257 5.29871 5.43375 5.53139 5.55497 5.59519 5.65982 5.67878 5.74227 5.77251 5.80234 5.81873 5.90454 5.91513 6.04371 6.06525 6.13649 6.16002 6.27249 6.38180 6.40290 6.53438 6.62182 6.68380 6.91698 7.61066 7.71279 7.94378 8.07439 8.34492 8.70185 9.28360 9.89531 10.53350 11.46809 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.016797 B = 0.004212 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.566019 B = 6646.711819 C = 7776.096484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.088 4.088 4 C -0.122 4.122 5 H 0.118 0.882 6 C -0.147 4.147 7 C -0.182 4.182 8 H 0.117 0.883 9 C 0.555 3.445 10 O -0.533 6.533 11 N -0.600 5.600 12 C 0.104 3.896 13 C -0.125 4.125 14 C -0.111 4.111 15 H 0.097 0.903 16 C 0.142 3.858 17 N -0.602 5.602 18 C -0.234 4.234 19 H 0.077 0.923 20 C -0.006 4.006 21 N -0.915 5.915 22 Si 0.911 3.089 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.177 3.823 27 C 0.115 3.885 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.034 0.966 43 H 0.018 0.982 44 H 0.253 0.747 45 H 0.051 0.949 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.127 4.808 -0.906 18.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.125 4.125 4 C -0.140 4.140 5 H 0.136 0.864 6 C -0.185 4.185 7 C -0.204 4.204 8 H 0.135 0.865 9 C 0.343 3.657 10 O -0.410 6.410 11 N -0.334 5.334 12 C -0.020 4.020 13 C -0.163 4.163 14 C -0.130 4.130 15 H 0.115 0.885 16 C 0.016 3.984 17 N -0.329 5.329 18 C -0.362 4.362 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.562 5.562 22 Si 0.741 3.259 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.051 3.949 27 C 0.011 3.989 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.052 0.948 43 H 0.035 0.965 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.789 3.982 -1.112 18.263 hybrid contribution 0.879 -0.033 0.615 1.073 sum -16.910 3.950 -0.497 17.372 Atomic orbital electron populations 1.21779 0.96044 1.01508 1.01634 1.21507 0.95421 0.96670 1.02473 1.21218 0.92187 0.97185 1.01900 1.22451 0.94269 0.95800 1.01505 0.86445 1.23095 1.03161 1.02072 0.90153 1.22250 0.97740 0.98114 1.02254 0.86513 1.19154 0.84245 0.82004 0.80279 1.90718 1.68544 1.32922 1.48781 1.48342 1.23783 1.07691 1.53563 1.22273 0.98532 0.83027 0.98128 1.22762 0.96190 0.97850 0.99514 1.23139 0.95493 0.94219 1.00174 0.88459 1.21298 0.93964 0.90086 0.93046 1.44215 1.31933 1.02138 1.54614 1.18955 1.02807 0.93803 1.20679 0.90535 1.24841 0.99411 0.95809 1.00250 1.69990 1.41352 1.00065 1.44786 0.86221 0.82591 0.77010 0.80030 1.21234 1.21601 1.21176 1.21216 0.89246 0.90356 0.94039 1.22615 0.84689 0.95676 0.95906 0.90466 0.92871 0.92833 0.92837 0.91748 0.91757 0.91806 0.91612 0.88028 0.88143 0.91165 0.91399 0.91140 0.90012 0.94817 0.96463 0.93635 0.93100 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.12 -1.12 5.89 -26.73 -0.16 -1.28 16 3 C -0.09 -0.85 5.50 -26.73 -0.15 -1.00 16 4 C -0.12 -1.57 5.25 -90.58 -0.48 -2.05 16 5 H 0.12 1.78 7.60 -51.93 -0.39 1.39 16 6 C -0.15 -1.96 9.88 -26.69 -0.26 -2.22 16 7 C -0.18 -2.59 5.25 -91.77 -0.48 -3.07 16 8 H 0.12 1.35 7.05 -51.93 -0.37 0.98 16 9 C 0.55 10.60 7.19 -10.98 -0.08 10.52 16 10 O -0.53 -12.46 16.16 5.56 0.09 -12.37 16 11 N -0.60 -10.93 2.99 -162.26 -0.49 -11.41 16 12 C 0.10 1.45 6.22 -2.57 -0.02 1.44 16 13 C -0.12 -1.58 6.35 -24.63 -0.16 -1.74 16 14 C -0.11 -1.86 4.33 -87.74 -0.38 -2.24 16 15 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 16 C 0.14 2.90 6.45 -3.39 -0.02 2.88 16 17 N -0.60 -15.78 3.38 -172.06 -0.58 -16.36 16 18 C -0.23 -6.69 10.25 -15.06 -0.15 -6.84 16 19 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 20 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 21 N -0.92 -28.28 10.24 55.49 0.57 -27.71 16 22 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 C 0.18 4.60 4.92 -3.74 -0.02 4.58 16 27 C 0.11 2.32 3.60 -66.23 -0.24 2.08 16 28 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.55 7.88 -51.93 -0.41 0.15 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 37 H 0.10 1.06 8.03 -51.93 -0.42 0.65 16 38 H 0.07 1.06 7.18 -51.93 -0.37 0.68 16 39 H 0.07 0.75 6.97 -51.93 -0.36 0.39 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.02 0.35 6.52 -51.93 -0.34 0.01 16 44 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 45 H 0.05 1.49 7.32 -51.93 -0.38 1.11 16 46 H 0.05 1.61 6.67 -51.93 -0.35 1.26 16 LS Contribution 359.15 15.07 5.41 5.41 Total: -1.00 -33.97 359.15 -10.34 -44.32 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -8.00 Total: 0.42 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -2.32 Total: 0.01 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.50 Total: -55.48 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.09 Total: -12.37 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.97 -10.34 -44.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076220753.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.806 kcal (2) G-P(sol) polarization free energy of solvation -33.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.72 seconds