Wall clock time and date at job start Tue Mar 31 2020 08:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47572 * 2 1 4 4 C 1.52996 * 109.47572 * 180.02562 * 3 2 1 5 5 H 1.09005 * 115.55728 * 29.30167 * 4 3 2 6 6 C 1.52995 * 117.50151 * 243.61285 * 4 3 2 7 7 C 1.52998 * 60.03399 * 252.52132 * 6 4 3 8 8 H 1.09002 * 117.49989 * 107.47232 * 7 6 4 9 9 C 1.50698 * 117.49867 * 252.49923 * 7 6 4 10 10 O 1.21282 * 120.00145 * 68.61128 * 9 7 6 11 11 N 1.34777 * 119.99965 * 248.60439 * 9 7 6 12 12 C 1.47287 * 136.54253 * 359.97438 * 11 9 7 13 13 C 1.54086 * 87.60355 * 151.36826 * 12 11 9 14 14 H 1.09001 * 115.04367 * 142.50610 * 13 12 11 15 15 C 1.53069 * 111.38966 * 273.97208 * 13 12 11 16 16 C 1.53145 * 109.20883 * 142.40130 * 15 13 12 17 17 N 1.46537 * 108.25368 * 301.58370 * 16 15 13 18 18 C 1.36936 * 119.74299 * 236.40093 * 17 16 15 19 19 H 1.07999 * 120.00059 * 25.17275 * 18 17 16 20 20 C 1.38810 * 120.00341 * 205.16198 * 18 17 16 21 21 N 1.31621 * 119.99573 * 14.53063 * 20 18 17 22 22 Si 1.86789 * 120.00395 * 194.52408 * 20 18 17 23 23 H 1.48503 * 109.46997 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47146 * 120.00478 * 22 20 18 25 25 H 1.48502 * 109.47454 * 240.00651 * 22 20 18 26 26 C 1.45705 * 120.52010 * 56.42917 * 17 16 15 27 27 C 1.46460 * 136.54246 * 179.62949 * 11 9 7 28 28 H 1.09000 * 111.44685 * 96.37934 * 27 11 9 29 29 H 1.08997 * 109.47024 * 59.99435 * 1 2 3 30 30 H 1.09003 * 109.47253 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46761 * 299.99855 * 1 2 3 32 32 H 1.09004 * 109.47111 * 240.00706 * 2 1 3 33 33 H 1.09004 * 109.47651 * 120.00317 * 2 1 3 34 34 H 1.09009 * 109.46923 * 59.99820 * 3 2 1 35 35 H 1.09004 * 109.46892 * 300.00782 * 3 2 1 36 36 H 1.08998 * 117.50375 * 145.02411 * 6 4 3 37 37 H 1.09000 * 117.49696 * 0.02562 * 6 4 3 38 38 H 1.09004 * 113.52981 * 266.04645 * 12 11 9 39 39 H 1.08993 * 113.52717 * 36.61610 * 12 11 9 40 40 H 1.09002 * 109.51136 * 262.31999 * 15 13 12 41 41 H 1.08993 * 109.51306 * 22.48015 * 15 13 12 42 42 H 1.08998 * 109.71310 * 61.27975 * 16 15 13 43 43 H 1.09006 * 109.70365 * 181.86025 * 16 15 13 44 44 H 0.97000 * 119.99952 * 179.97438 * 21 20 18 45 45 H 1.09000 * 108.78906 * 80.89254 * 26 17 16 46 46 H 1.08994 * 108.78941 * 199.11421 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 4.0401 0.5850 -0.4823 6 6 4.2770 2.0454 1.2148 7 6 4.2767 2.7952 -0.1189 8 1 3.6512 3.6845 -0.1961 9 6 5.5694 2.8401 -0.8922 10 8 6.0121 1.8280 -1.3927 11 7 6.2334 4.0051 -1.0276 12 6 6.0448 5.4000 -0.5940 13 6 7.5787 5.5447 -0.6111 14 1 7.9473 6.5093 -0.9601 15 6 8.1973 5.0881 0.7125 16 6 9.5185 4.3673 0.4291 17 7 9.2414 3.2316 -0.4545 18 6 9.6052 1.9683 -0.0715 19 1 9.7073 1.7302 0.9770 20 6 9.8426 0.9934 -1.0307 21 7 10.0009 1.3359 -2.2917 22 14 9.9375 -0.8042 -0.5321 23 1 9.7266 -0.9232 0.9330 24 1 8.8867 -1.5723 -1.2471 25 1 11.2740 -1.3462 -0.8859 26 6 8.5823 3.4361 -1.7377 27 6 7.4718 4.4547 -1.6675 28 1 7.2807 4.8731 -2.6556 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 5.2123 1.5848 1.5329 37 1 3.6522 2.4417 2.0152 38 1 5.5408 6.0214 -1.3343 39 1 5.6090 5.4911 0.4008 40 1 8.3843 5.9556 1.3454 41 1 7.5127 4.4078 1.2188 42 1 10.2133 5.0513 -0.0582 43 1 9.9499 4.0096 1.3641 44 1 10.1672 0.6547 -2.9620 45 1 9.3232 3.7715 -2.4635 46 1 8.1685 2.4859 -2.0753 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084643121.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:01 Heat of formation + Delta-G solvation = 43.167937 kcal Electronic energy + Delta-G solvation = -24701.389757 eV Core-core repulsion = 21400.512882 eV Total energy + Delta-G solvation = -3300.876875 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.50137 -38.64065 -36.45482 -35.15264 -33.83244 -32.09064 -30.09203 -29.19303 -27.45438 -26.85620 -24.01487 -23.74815 -22.34956 -21.89287 -20.97659 -20.45580 -19.32200 -17.69722 -17.07869 -15.96190 -15.63348 -15.40881 -15.22360 -14.59600 -14.21069 -13.80762 -13.66871 -13.41719 -13.24194 -13.16490 -12.72970 -12.64052 -12.35486 -12.18077 -11.94551 -11.78181 -11.42156 -11.34879 -11.09910 -10.98922 -10.89357 -10.64325 -10.60075 -10.42101 -10.13145 -10.08541 -9.88775 -9.79756 -9.73942 -9.49270 -8.86392 -8.25674 -8.02550 -6.54878 -5.61468 -3.03122 3.07608 3.32925 3.49784 3.57172 3.58715 4.06235 4.54054 4.63958 4.73677 4.84286 4.89617 5.01347 5.09825 5.16165 5.25502 5.32898 5.47225 5.48628 5.55261 5.60210 5.63797 5.67237 5.70379 5.73888 5.78788 5.80489 5.93268 5.96530 6.07224 6.16050 6.18808 6.19838 6.26847 6.39251 6.43681 6.47605 6.57568 6.64558 6.82770 7.04241 7.54878 7.82371 7.98885 8.44114 8.62007 8.89198 9.40029 10.04621 10.52001 11.46792 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.013084 B = 0.005627 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.574519 B = 4974.571994 C = 6439.592232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.087 4.087 4 C -0.122 4.122 5 H 0.118 0.882 6 C -0.149 4.149 7 C -0.179 4.179 8 H 0.113 0.887 9 C 0.567 3.433 10 O -0.516 6.516 11 N -0.630 5.630 12 C 0.096 3.904 13 C -0.113 4.113 14 H 0.091 0.909 15 C -0.115 4.115 16 C 0.148 3.852 17 N -0.585 5.585 18 C -0.251 4.251 19 H 0.062 0.938 20 C 0.011 3.989 21 N -0.904 5.904 22 Si 0.900 3.100 23 H -0.280 1.280 24 H -0.289 1.289 25 H -0.292 1.292 26 C 0.167 3.833 27 C 0.119 3.881 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.019 0.981 43 H 0.055 0.945 44 H 0.251 0.749 45 H 0.029 0.971 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.357 7.755 5.293 18.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.124 4.124 4 C -0.141 4.141 5 H 0.136 0.864 6 C -0.186 4.186 7 C -0.200 4.200 8 H 0.131 0.869 9 C 0.356 3.644 10 O -0.391 6.391 11 N -0.366 5.366 12 C -0.027 4.027 13 C -0.132 4.132 14 H 0.109 0.891 15 C -0.154 4.154 16 C 0.021 3.979 17 N -0.307 5.307 18 C -0.381 4.381 19 H 0.080 0.920 20 C -0.187 4.187 21 N -0.549 5.549 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.215 1.215 25 H -0.219 1.219 26 C 0.040 3.960 27 C 0.015 3.985 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.037 0.963 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.046 0.954 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.204 6.854 4.888 17.379 hybrid contribution -0.087 -0.693 0.075 0.703 sum -15.291 6.160 4.963 17.216 Atomic orbital electron populations 1.21775 0.96054 1.01492 1.01595 1.21511 0.95393 0.96690 1.02511 1.21210 0.92235 0.97153 1.01802 1.22454 0.94207 0.95925 1.01515 0.86422 1.23062 1.03105 1.02260 0.90175 1.22228 0.97839 0.97806 1.02137 0.86921 1.18930 0.83522 0.81602 0.80352 1.90776 1.67415 1.32577 1.48355 1.49342 1.25193 1.06393 1.55652 1.23282 0.97342 0.82569 0.99551 1.22693 0.94203 0.98435 0.97910 0.89129 1.21838 1.00158 0.99226 0.94207 1.20720 0.92581 0.89951 0.94603 1.43468 1.66366 1.02523 1.18381 1.19125 1.40902 0.86491 0.91575 0.92022 1.24903 0.99660 0.98409 0.95740 1.70017 1.52504 1.31728 1.00609 0.86258 0.76924 0.85959 0.77791 1.20528 1.21536 1.21948 1.20168 0.90004 0.98199 0.87583 1.22495 0.86461 0.94537 0.94972 0.91293 0.92838 0.92837 0.92907 0.91718 0.91768 0.91890 0.91664 0.88032 0.88367 0.90757 0.91164 0.92769 0.92085 0.96344 0.92675 0.93908 0.95368 0.87846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.90 16 2 C -0.12 -1.24 5.89 -26.73 -0.16 -1.40 16 3 C -0.09 -0.93 5.50 -26.73 -0.15 -1.08 16 4 C -0.12 -1.73 5.25 -90.59 -0.48 -2.21 16 5 H 0.12 1.98 7.60 -51.93 -0.39 1.59 16 6 C -0.15 -2.07 9.88 -26.73 -0.26 -2.34 16 7 C -0.18 -2.72 5.77 -91.73 -0.53 -3.25 16 8 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 9 C 0.57 11.56 7.80 -10.99 -0.09 11.47 16 10 O -0.52 -13.24 15.51 5.56 0.09 -13.15 16 11 N -0.63 -11.75 3.34 -188.03 -0.63 -12.38 16 12 C 0.10 1.32 7.78 -11.54 -0.09 1.23 16 13 C -0.11 -1.76 4.57 -90.44 -0.41 -2.17 16 14 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 15 C -0.11 -1.94 5.69 -26.62 -0.15 -2.09 16 16 C 0.15 3.12 6.46 -3.95 -0.03 3.09 16 17 N -0.58 -15.22 3.03 -175.04 -0.53 -15.75 16 18 C -0.25 -7.32 9.53 -15.06 -0.14 -7.46 16 19 H 0.06 1.78 7.83 -52.49 -0.41 1.36 16 20 C 0.01 0.34 4.94 -17.43 -0.09 0.25 16 21 N -0.90 -27.92 10.94 55.49 0.61 -27.31 16 22 Si 0.90 23.72 29.58 -169.99 -5.03 18.69 16 23 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 25 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 26 C 0.17 4.24 4.59 -5.55 -0.03 4.21 16 27 C 0.12 2.35 3.98 -77.95 -0.31 2.04 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.60 7.88 -51.92 -0.41 0.19 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 37 H 0.10 1.08 8.03 -51.93 -0.42 0.67 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 1.13 7.68 -51.93 -0.40 0.74 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.05 1.15 7.87 -51.93 -0.41 0.74 16 44 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.03 0.77 7.99 -51.93 -0.42 0.36 16 46 H 0.10 3.10 4.95 -51.93 -0.26 2.84 16 LS Contribution 363.31 15.07 5.48 5.48 Total: -1.00 -34.30 363.31 -10.72 -45.01 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -8.16 Total: 0.02 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -2.54 Total: -0.61 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -0.55 Total: -55.45 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.09 Total: -13.15 kcal Atomic # 14 Polarization: 23.72 SS G_CDS: -5.03 Total: 18.69 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.30 -10.72 -45.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084643121.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.182 kcal (2) G-P(sol) polarization free energy of solvation -34.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds