Wall clock time and date at job start Tue Mar 31 2020 06:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47089 * 2 1 4 4 C 1.53005 * 109.46874 * 119.99877 * 2 1 3 5 5 C 1.50697 * 115.54720 * 65.45498 * 4 2 1 6 6 O 1.21284 * 119.99902 * 245.93098 * 5 4 2 7 7 N 1.34779 * 120.00425 * 65.93645 * 5 4 2 8 8 C 1.47283 * 136.54215 * 355.62758 * 7 5 4 9 9 C 1.54079 * 87.60639 * 151.36784 * 8 7 5 10 10 H 1.08993 * 115.04572 * 142.50256 * 9 8 7 11 11 C 1.53070 * 111.38893 * 273.97112 * 9 8 7 12 12 C 1.53149 * 109.21274 * 142.39821 * 11 9 8 13 13 N 1.46539 * 108.25345 * 301.59337 * 12 11 9 14 14 C 1.36940 * 119.73565 * 236.44390 * 13 12 11 15 15 H 1.08003 * 119.99714 * 30.92342 * 14 13 12 16 16 C 1.38814 * 119.99990 * 210.92304 * 14 13 12 17 17 N 1.31619 * 119.99552 * 8.16025 * 16 14 13 18 18 Si 1.86793 * 119.99873 * 188.16613 * 16 14 13 19 19 H 1.48500 * 109.47363 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47357 * 119.99792 * 18 16 14 21 21 H 1.48507 * 109.47003 * 239.99823 * 18 16 14 22 22 C 1.45695 * 120.52303 * 56.41513 * 13 12 11 23 23 C 1.46469 * 136.54296 * 175.25257 * 7 5 4 24 24 H 1.09005 * 111.43394 * 96.38315 * 23 7 5 25 25 C 1.52997 * 117.49732 * 279.77913 * 4 2 1 26 26 C 1.52994 * 117.49579 * 211.12200 * 4 2 1 27 27 H 1.08999 * 109.46960 * 54.83525 * 1 2 3 28 28 H 1.08995 * 109.47485 * 294.83257 * 1 2 3 29 29 H 1.09005 * 109.46921 * 174.82782 * 1 2 3 30 30 H 1.08998 * 109.47455 * 239.99878 * 2 1 3 31 31 H 1.08997 * 109.46797 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46867 * 299.99714 * 3 2 1 33 33 H 1.09003 * 109.46960 * 60.00108 * 3 2 1 34 34 H 1.09000 * 113.52527 * 266.05188 * 8 7 5 35 35 H 1.09005 * 113.52869 * 36.61247 * 8 7 5 36 36 H 1.08999 * 109.51089 * 262.31692 * 11 9 8 37 37 H 1.09002 * 109.51406 * 22.47992 * 11 9 8 38 38 H 1.09006 * 109.70530 * 61.28145 * 12 11 9 39 39 H 1.08998 * 109.71127 * 181.89680 * 12 11 9 40 40 H 0.97005 * 119.99080 * 180.02562 * 17 16 14 41 41 H 1.09000 * 108.78395 * 80.90522 * 22 13 12 42 42 H 1.09008 * 108.78707 * 199.22889 * 22 13 12 43 43 H 1.08999 * 117.50265 * 0.02562 * 25 4 2 44 44 H 1.09002 * 117.49398 * 145.01979 * 25 4 2 45 45 H 1.09010 * 117.49842 * 214.97983 * 26 4 2 46 46 H 1.09000 * 117.50456 * 359.97238 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.7241 -2.1928 1.3246 6 8 0.9756 -2.6092 2.1834 7 7 2.2733 -3.0463 0.4378 8 6 3.1310 -2.9432 -0.7551 9 6 3.6631 -4.3485 -0.4145 10 1 3.8553 -4.9900 -1.2744 11 6 4.8261 -4.2797 0.5783 12 6 4.7229 -5.4526 1.5576 13 7 3.4286 -5.3688 2.2394 14 6 3.3835 -5.3158 3.6071 15 1 4.1886 -4.8502 4.1562 16 6 2.3032 -5.8605 4.2876 17 7 1.4037 -6.5669 3.6363 18 14 2.1260 -5.5907 6.1274 19 1 3.2609 -4.7686 6.6187 20 1 0.8481 -4.8865 6.4037 21 1 2.1285 -6.9029 6.8226 22 6 2.1893 -5.3407 1.4738 23 6 2.2922 -4.4959 0.2287 24 1 1.5405 -4.8033 -0.4983 25 6 2.0581 0.0656 2.5613 26 6 3.3708 -0.2531 1.8414 27 1 -0.3633 0.5919 -0.8401 28 1 -0.3634 0.4316 0.9326 29 1 -0.3633 -1.0235 -0.0926 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 2.5727 -2.9041 -1.6904 35 1 3.8866 -2.1609 -0.6814 36 1 5.7705 -4.3390 0.0373 37 1 4.7794 -3.3403 1.1292 38 1 4.7907 -6.3939 1.0120 39 1 5.5285 -5.3926 2.2893 40 1 0.6485 -6.9472 4.1118 41 1 1.9301 -6.3602 1.1882 42 1 1.3956 -4.9410 2.1051 43 1 1.7063 1.0969 2.5346 44 1 1.8418 -0.4813 3.4791 45 1 4.0177 -1.0096 2.2859 46 1 3.8833 0.5683 1.3408 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084644170.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:52 Heat of formation + Delta-G solvation = 51.895768 kcal Electronic energy + Delta-G solvation = -25722.431967 eV Core-core repulsion = 22421.933559 eV Total energy + Delta-G solvation = -3300.498408 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 4.20 seconds Orbital eigenvalues (eV) -40.64546 -39.00784 -36.55802 -35.13938 -32.84812 -32.07289 -30.11605 -29.12534 -27.30727 -26.85343 -24.50342 -23.80013 -22.62919 -22.26306 -21.19162 -20.42081 -18.79639 -17.60543 -16.90729 -16.06685 -15.65144 -15.38091 -15.24229 -14.43466 -14.21025 -13.78019 -13.56342 -13.28718 -13.18261 -12.94644 -12.67504 -12.56716 -12.36739 -12.13933 -11.91002 -11.73139 -11.41852 -11.31492 -11.08706 -11.02248 -10.97547 -10.69174 -10.62435 -10.41181 -10.20264 -10.13613 -9.83235 -9.78885 -9.73561 -9.44197 -8.82011 -8.29586 -8.01142 -6.47928 -5.62963 -3.11576 3.21052 3.33957 3.47507 3.54293 3.55964 3.91344 4.61215 4.63580 4.73613 4.73708 4.90116 4.96124 5.13390 5.26858 5.28304 5.42517 5.49960 5.56973 5.57994 5.59991 5.67518 5.69723 5.75218 5.79457 5.83075 5.90871 5.96012 5.98880 6.14124 6.19464 6.24537 6.28378 6.31128 6.35161 6.41676 6.44854 6.58477 6.65853 6.83864 7.04953 7.54992 7.82838 7.96759 8.44882 8.63636 8.89897 9.39771 10.01986 10.52494 11.44737 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.015852 B = 0.006562 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.913359 B = 4265.839519 C = 5091.908284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 C -0.151 4.151 4 C -0.143 4.143 5 C 0.579 3.421 6 O -0.517 6.517 7 N -0.627 5.627 8 C 0.097 3.903 9 C -0.113 4.113 10 H 0.090 0.910 11 C -0.115 4.115 12 C 0.148 3.852 13 N -0.584 5.584 14 C -0.252 4.252 15 H 0.059 0.941 16 C 0.013 3.987 17 N -0.904 5.904 18 Si 0.901 3.099 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.291 1.291 22 C 0.168 3.832 23 C 0.119 3.881 24 H 0.068 0.932 25 C -0.148 4.148 26 C -0.162 4.162 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.019 0.981 39 H 0.055 0.945 40 H 0.251 0.749 41 H 0.031 0.969 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.098 0.902 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.909 13.118 -11.968 18.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 C -0.208 4.208 4 C -0.147 4.147 5 C 0.367 3.633 6 O -0.391 6.391 7 N -0.363 5.363 8 C -0.026 4.026 9 C -0.132 4.132 10 H 0.108 0.892 11 C -0.154 4.154 12 C 0.021 3.979 13 N -0.307 5.307 14 C -0.382 4.382 15 H 0.077 0.923 16 C -0.186 4.186 17 N -0.548 5.548 18 Si 0.731 3.269 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.218 1.218 22 C 0.042 3.958 23 C 0.015 3.985 24 H 0.086 0.914 25 C -0.185 4.185 26 C -0.199 4.199 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.116 0.884 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.218 12.959 -11.245 17.457 hybrid contribution -0.274 0.132 0.782 0.839 sum 2.944 13.092 -10.464 17.016 Atomic orbital electron populations 1.21784 0.94640 1.02054 1.01694 1.20494 0.95961 0.95294 0.95135 1.21992 1.01199 0.95647 1.01928 1.21445 1.03590 0.92847 0.96777 1.18728 0.79249 0.84931 0.80377 1.90766 1.35237 1.77774 1.35332 1.49333 1.51385 1.08568 1.26975 1.23265 0.92584 0.98154 0.88630 1.22687 0.96048 0.95911 0.98589 0.89169 1.21839 0.94894 1.01615 0.97050 1.20738 0.89733 0.93740 0.93643 1.43418 0.99321 1.85525 1.02409 1.19083 1.06593 1.30950 0.81598 0.92296 1.25100 0.98766 0.97070 0.97655 1.69982 1.13755 1.36437 1.34602 0.86242 0.77717 0.77169 0.85734 1.20432 1.21555 1.21768 1.20135 0.90824 0.95165 0.89654 1.22498 0.94778 0.81478 0.99729 0.91390 1.23011 1.00000 1.00142 0.95335 1.23145 0.90396 1.03178 1.03182 0.92721 0.92298 0.92658 0.90857 0.92198 0.92509 0.92212 0.90838 0.91138 0.92798 0.92152 0.96340 0.92683 0.93839 0.95162 0.88410 0.88231 0.87880 0.88390 0.88047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.00 37.16 0.33 -1.45 16 2 C -0.05 -0.60 3.00 -90.62 -0.27 -0.87 16 3 C -0.15 -1.40 8.23 37.16 0.31 -1.09 16 4 C -0.14 -2.17 1.75 -155.66 -0.27 -2.45 16 5 C 0.58 11.66 6.75 -10.99 -0.07 11.59 16 6 O -0.52 -13.23 16.04 5.55 0.09 -13.14 16 7 N -0.63 -11.52 3.34 -188.05 -0.63 -12.15 16 8 C 0.10 1.33 7.04 -11.54 -0.08 1.25 16 9 C -0.11 -1.75 4.57 -90.46 -0.41 -2.16 16 10 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 11 C -0.11 -1.91 5.69 -26.62 -0.15 -2.07 16 12 C 0.15 3.10 6.46 -3.94 -0.03 3.07 16 13 N -0.58 -15.10 3.01 -175.06 -0.53 -15.62 16 14 C -0.25 -7.30 9.46 -15.06 -0.14 -7.44 16 15 H 0.06 1.70 7.84 -52.48 -0.41 1.28 16 16 C 0.01 0.39 5.06 -17.43 -0.09 0.30 16 17 N -0.90 -27.83 10.96 55.49 0.61 -27.23 16 18 Si 0.90 23.51 29.56 -169.99 -5.02 18.48 16 19 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 21 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 22 C 0.17 4.26 4.59 -5.57 -0.03 4.24 16 23 C 0.12 2.33 3.98 -77.97 -0.31 2.02 16 24 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 25 C -0.15 -2.15 9.39 -26.70 -0.25 -2.40 16 26 C -0.16 -2.20 9.51 -26.70 -0.25 -2.45 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.80 7.88 -51.93 -0.41 0.39 16 30 H 0.07 0.85 7.38 -51.93 -0.38 0.47 16 31 H 0.06 0.52 6.31 -51.93 -0.33 0.19 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.55 6.39 -51.93 -0.33 0.22 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.86 8.05 -51.93 -0.42 0.45 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 1.10 7.68 -51.93 -0.40 0.70 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.05 1.14 7.90 -51.93 -0.41 0.73 16 40 H 0.25 7.53 8.31 -40.82 -0.34 7.20 16 41 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 42 H 0.10 2.93 5.25 -51.92 -0.27 2.66 16 43 H 0.10 1.17 6.45 -51.93 -0.34 0.84 16 44 H 0.10 1.78 8.00 -51.93 -0.42 1.37 16 45 H 0.10 1.53 8.14 -51.92 -0.42 1.11 16 46 H 0.10 1.08 6.07 -51.93 -0.32 0.77 16 LS Contribution 353.44 15.07 5.33 5.33 Total: -1.00 -34.14 353.44 -9.66 -43.79 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -7.78 Total: 0.45 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -1.72 Total: 0.08 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.55 Total: -55.00 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.09 Total: -13.14 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -5.02 Total: 18.48 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.14 -9.66 -43.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084644170.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.690 kcal (2) G-P(sol) polarization free energy of solvation -34.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.20 seconds