Wall clock time and date at job start Tue Mar 31 2020 06:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.47108 * 119.99785 * 2 1 4 4 O 1.21613 * 119.99960 * 179.97438 * 3 2 1 5 5 N 1.34777 * 120.00078 * 0.02562 * 3 2 1 6 6 C 1.46498 * 119.99828 * 180.27699 * 5 3 2 7 7 H 1.09004 * 109.47372 * 34.71852 * 6 5 3 8 8 C 1.52997 * 109.47036 * 274.72131 * 6 5 3 9 9 C 1.53003 * 109.47241 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47087 * 59.99958 * 9 8 6 11 11 C 1.52997 * 109.47114 * 300.00120 * 10 9 8 12 12 C 1.52999 * 109.46963 * 154.72290 * 6 5 3 13 13 H 1.08995 * 109.47266 * 59.99845 * 12 6 5 14 14 N 1.46503 * 109.47247 * 299.99162 * 12 6 5 15 15 C 1.36937 * 120.00056 * 154.99604 * 14 12 6 16 16 H 1.08005 * 119.99967 * 0.02562 * 15 14 12 17 17 C 1.38806 * 120.00094 * 180.02562 * 15 14 12 18 18 N 1.31618 * 120.00321 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99974 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47276 * 90.00323 * 19 17 15 21 21 H 1.48501 * 109.47184 * 210.00161 * 19 17 15 22 22 H 1.48509 * 109.46978 * 329.99730 * 19 17 15 23 23 C 1.32988 * 120.00407 * 180.02562 * 2 1 3 24 24 C 1.51404 * 136.32146 * 179.62990 * 23 2 1 25 25 C 1.53367 * 87.52103 * 206.05294 * 24 23 2 26 26 C 1.51412 * 136.31427 * 359.97438 * 23 2 1 27 27 H 1.09001 * 109.47288 * 89.99866 * 1 2 3 28 28 H 1.09001 * 109.46749 * 210.00016 * 1 2 3 29 29 H 1.08997 * 109.47440 * 329.99955 * 1 2 3 30 30 H 0.97001 * 119.99727 * 359.97438 * 5 3 2 31 31 H 1.09009 * 109.47238 * 300.00198 * 8 6 5 32 32 H 1.08997 * 109.47293 * 60.00168 * 8 6 5 33 33 H 1.08995 * 109.46928 * 299.99922 * 9 8 6 34 34 H 1.09000 * 109.47191 * 180.02562 * 9 8 6 35 35 H 1.09003 * 109.47147 * 180.02562 * 10 9 8 36 36 H 1.08995 * 109.47266 * 60.00171 * 10 9 8 37 37 H 1.09004 * 109.46812 * 300.00187 * 11 10 9 38 38 H 1.08997 * 109.47293 * 180.02562 * 11 10 9 39 39 H 0.96998 * 119.99938 * 335.01407 * 14 12 6 40 40 H 0.96999 * 120.00722 * 179.97438 * 18 17 15 41 41 H 1.08998 * 113.56056 * 320.63877 * 24 23 2 42 42 H 1.09004 * 113.56286 * 91.36829 * 24 23 2 43 43 H 1.09004 * 113.97423 * 220.28951 * 25 24 23 44 44 H 1.09005 * 113.71245 * 88.80936 * 25 24 23 45 45 H 1.08999 * 113.55796 * 268.62982 * 26 23 2 46 46 H 1.09002 * 113.55952 * 39.28923 * 26 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 3.4586 1.2741 0.0005 5 7 1.5685 2.4412 0.0005 6 6 2.3010 3.7099 -0.0056 7 1 3.2116 3.6010 -0.5949 8 6 2.6654 4.0953 1.4295 9 6 3.4299 5.4207 1.4232 10 6 2.5519 6.5129 0.8090 11 6 2.1875 6.1275 -0.6260 12 6 1.4236 4.8024 -0.6199 13 1 0.5131 4.9113 -0.0307 14 7 1.0748 4.4334 -1.9942 15 6 -0.0614 4.9355 -2.5705 16 1 -0.7002 5.6038 -2.0121 17 6 -0.3922 4.5855 -3.8724 18 7 0.3859 3.7706 -4.5527 19 14 -1.9418 5.2709 -4.6588 20 1 -1.6244 6.5481 -5.3468 21 1 -2.4694 4.2949 -5.6458 22 1 -2.9635 5.5146 -3.6090 23 6 2.1720 -1.1517 -0.0005 24 6 3.6250 -1.5771 -0.0075 25 6 3.1709 -2.8814 -0.6743 26 6 1.8139 -2.6228 -0.0007 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 0.5985 2.4411 0.0005 31 1 1.7549 4.2043 2.0188 32 1 3.2905 3.3171 1.8672 33 1 4.3403 5.3121 0.8338 34 1 3.6898 5.6950 2.4455 35 1 3.0967 7.4570 0.8041 36 1 1.6415 6.6214 1.3984 37 1 3.0981 6.0189 -1.2154 38 1 1.5625 6.9058 -1.0637 39 1 1.6485 3.8333 -2.4957 40 1 0.1546 3.5257 -5.4624 41 1 4.2566 -0.9599 -0.6464 42 1 4.0421 -1.7196 0.9895 43 1 3.6835 -3.7696 -0.3048 44 1 3.1395 -2.8295 -1.7626 45 1 1.7344 -3.0520 0.9981 46 1 0.9592 -2.8631 -0.6331 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085194814.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:25 Heat of formation + Delta-G solvation = -8.714049 kcal Electronic energy + Delta-G solvation = -24265.724543 eV Core-core repulsion = 20962.597897 eV Total energy + Delta-G solvation = -3303.126647 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.88614 -38.66040 -37.42676 -34.03694 -33.79819 -32.72461 -31.11692 -29.14908 -27.61680 -26.46174 -25.46234 -23.74726 -23.34529 -21.74012 -21.04616 -20.01959 -19.63188 -17.93722 -17.06367 -16.27666 -15.91189 -15.49538 -15.10952 -14.50328 -14.38453 -13.93121 -13.78593 -13.64339 -13.29574 -12.91257 -12.84020 -12.65252 -12.43536 -12.28845 -12.08842 -12.05803 -11.83073 -11.53651 -11.06587 -10.94203 -10.90877 -10.77869 -10.72462 -10.53912 -10.39697 -10.28066 -10.15953 -9.71964 -9.61096 -9.27042 -8.90231 -8.74139 -8.40174 -6.97408 -5.77116 -3.06794 1.58756 3.41356 3.46651 3.48459 3.57130 3.70967 4.48409 4.55904 4.57635 4.76503 5.08739 5.10006 5.13521 5.20274 5.32910 5.39980 5.54240 5.54833 5.55634 5.63501 5.74077 5.75712 5.77500 5.85329 5.90296 5.92795 5.97600 6.00829 6.01560 6.14314 6.14761 6.26067 6.37176 6.40750 6.48500 6.53366 6.56870 6.61493 6.83414 6.89596 6.96860 7.15262 7.67856 8.06692 8.39979 8.72710 9.51670 10.08758 10.44113 11.44840 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.011377 B = 0.005384 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.542642 B = 5199.305970 C = 7077.281398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.153 4.153 3 C 0.557 3.443 4 O -0.552 6.552 5 N -0.703 5.703 6 C 0.141 3.859 7 H 0.083 0.917 8 C -0.123 4.123 9 C -0.113 4.113 10 C -0.119 4.119 11 C -0.133 4.133 12 C 0.173 3.827 13 H 0.049 0.951 14 N -0.721 5.721 15 C -0.240 4.240 16 H 0.070 0.930 17 C -0.011 4.011 18 N -0.929 5.929 19 Si 0.904 3.096 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.082 4.082 24 C -0.100 4.100 25 C -0.142 4.142 26 C -0.104 4.104 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.402 0.598 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.912 -7.748 13.092 15.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.156 4.156 3 C 0.345 3.655 4 O -0.432 6.432 5 N -0.353 5.353 6 C 0.036 3.964 7 H 0.101 0.899 8 C -0.162 4.162 9 C -0.152 4.152 10 C -0.157 4.157 11 C -0.174 4.174 12 C 0.062 3.938 13 H 0.067 0.933 14 N -0.362 5.362 15 C -0.371 4.371 16 H 0.088 0.912 17 C -0.207 4.207 18 N -0.577 5.577 19 Si 0.735 3.265 20 H -0.218 1.218 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.084 4.084 24 C -0.136 4.136 25 C -0.179 4.179 26 C -0.141 4.141 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.238 0.762 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.113 0.887 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.579 -7.669 13.018 15.527 hybrid contribution -1.198 0.302 -0.839 1.493 sum 2.381 -7.367 12.179 14.431 Atomic orbital electron populations 1.20675 0.90609 1.02345 1.02982 1.20539 0.95881 0.91567 1.07617 1.18163 0.87141 0.83915 0.76264 1.90720 1.13551 1.87826 1.51064 1.45841 1.10578 1.05128 1.73723 1.21271 0.96307 0.83125 0.95700 0.89888 1.21867 1.00166 0.97243 0.96945 1.21470 0.98767 0.94706 1.00218 1.21577 0.99173 0.97553 0.97418 1.22209 1.00827 0.99673 0.94672 1.20453 0.94713 0.90756 0.87842 0.93267 1.42416 1.27659 1.56491 1.09641 1.19202 0.99526 1.22485 0.95887 0.91230 1.24726 0.98822 1.00093 0.97050 1.69674 1.38563 1.38428 1.11056 0.86244 0.82986 0.78117 0.79127 1.21789 1.21873 1.20804 1.23090 0.97839 0.93486 0.94004 1.22107 0.94318 0.95772 1.01443 1.22707 0.96681 0.98033 1.00509 1.22252 0.98468 0.92050 1.01357 0.90596 0.91666 0.91539 0.76188 0.92134 0.91974 0.92001 0.92455 0.92722 0.92412 0.92480 0.91644 0.78124 0.93540 0.89671 0.89003 0.90796 0.89771 0.88678 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 9.57 36.00 0.34 -1.05 16 2 C -0.15 -2.34 6.00 -102.85 -0.62 -2.95 16 3 C 0.56 10.06 7.72 -12.66 -0.10 9.96 16 4 O -0.55 -11.33 14.81 5.27 0.08 -11.25 16 5 N -0.70 -12.17 4.85 -54.99 -0.27 -12.43 16 6 C 0.14 2.49 1.98 -67.93 -0.13 2.36 16 7 H 0.08 1.68 7.57 -51.93 -0.39 1.28 16 8 C -0.12 -1.82 5.50 -26.73 -0.15 -1.96 16 9 C -0.11 -1.52 5.92 -26.73 -0.16 -1.68 16 10 C -0.12 -1.66 5.92 -26.73 -0.16 -1.82 16 11 C -0.13 -2.34 5.50 -26.76 -0.15 -2.49 16 12 C 0.17 3.32 2.29 -67.95 -0.16 3.16 16 13 H 0.05 0.94 8.08 -51.93 -0.42 0.53 16 14 N -0.72 -17.46 4.95 -53.45 -0.26 -17.73 16 15 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 16 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 17 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 18 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16 19 Si 0.90 21.98 29.55 -169.99 -5.02 16.96 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C -0.08 -1.14 6.60 -100.48 -0.66 -1.80 16 24 C -0.10 -1.29 6.99 -27.56 -0.19 -1.48 16 25 C -0.14 -1.46 8.17 -26.19 -0.21 -1.68 16 26 C -0.10 -1.07 7.72 -27.39 -0.21 -1.28 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.06 0.68 7.91 -51.93 -0.41 0.27 16 29 H 0.07 0.79 6.70 -51.93 -0.35 0.45 16 30 H 0.40 6.64 6.70 -40.82 -0.27 6.37 16 31 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.38 10.34 7.80 -40.82 -0.32 10.02 16 40 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.08 1.30 7.49 -51.93 -0.39 0.91 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 366.22 15.07 5.52 5.52 Total: -1.00 -30.72 366.22 -10.05 -40.77 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: -8.02 Total: 14.88 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -2.80 Total: -9.65 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.19 Total: -57.22 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.72 -10.05 -40.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085194814.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.052 kcal (2) G-P(sol) polarization free energy of solvation -30.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds