Wall clock time and date at job start Tue Mar 31 2020 06:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 112.96509 * 2 1 4 4 C 1.53869 * 113.68803 * 131.48232 * 2 1 3 5 5 H 1.08996 * 113.72165 * 333.81382 * 4 2 1 6 6 N 1.46503 * 113.63757 * 202.84742 * 4 2 1 7 7 C 1.34774 * 120.00230 * 158.15106 * 6 4 2 8 8 O 1.21286 * 119.99886 * 0.02562 * 7 6 4 9 9 C 1.50700 * 120.00309 * 179.97438 * 7 6 4 10 10 C 1.52999 * 117.50087 * 111.25218 * 9 7 6 11 11 C 1.52997 * 117.49751 * 179.91451 * 9 7 6 12 12 C 1.54148 * 86.93623 * 88.33699 * 4 2 1 13 13 H 1.08998 * 114.24803 * 141.19986 * 12 4 2 14 14 C 1.53063 * 111.68517 * 271.97828 * 12 4 2 15 15 C 1.53014 * 109.39902 * 146.41971 * 14 12 4 16 16 C 1.52937 * 108.92928 * 295.33284 * 15 14 12 17 17 N 1.45896 * 109.89092 * 57.34915 * 16 15 14 18 18 C 1.36934 * 118.48251 * 140.65383 * 17 16 15 19 19 H 1.08003 * 120.00317 * 206.48820 * 18 17 16 20 20 C 1.38812 * 120.00388 * 26.49547 * 18 17 16 21 21 N 1.31624 * 119.99653 * 16.22656 * 20 18 17 22 22 Si 1.86803 * 120.00497 * 196.23288 * 20 18 17 23 23 H 1.48497 * 109.47107 * 84.94995 * 22 20 18 24 24 H 1.48494 * 109.47087 * 204.95449 * 22 20 18 25 25 H 1.48505 * 109.46572 * 324.94834 * 22 20 18 26 26 C 1.45089 * 123.03156 * 320.67996 * 17 16 15 27 27 H 1.08996 * 111.58344 * 156.40367 * 26 17 16 28 28 H 1.09000 * 109.46939 * 276.04730 * 1 2 3 29 29 H 1.08992 * 109.47347 * 36.05298 * 1 2 3 30 30 H 1.09002 * 109.46594 * 156.05462 * 1 2 3 31 31 H 1.09000 * 109.46543 * 171.98490 * 3 2 1 32 32 H 1.08998 * 109.46961 * 291.97838 * 3 2 1 33 33 H 1.08998 * 109.47225 * 51.98394 * 3 2 1 34 34 H 0.97002 * 120.00058 * 338.14219 * 6 4 2 35 35 H 1.09007 * 115.54772 * 325.57796 * 9 7 6 36 36 H 1.09002 * 117.49715 * 215.00783 * 10 9 7 37 37 H 1.08998 * 117.49724 * 0.02562 * 10 9 7 38 38 H 1.08998 * 117.50298 * 359.96993 * 11 9 7 39 39 H 1.09001 * 117.49684 * 144.97789 * 11 9 7 40 40 H 1.09003 * 109.48368 * 266.37866 * 14 12 4 41 41 H 1.08993 * 109.48419 * 26.41779 * 14 12 4 42 42 H 1.08999 * 109.55418 * 175.50192 * 15 14 12 43 43 H 1.08998 * 109.65788 * 55.22535 * 15 14 12 44 44 H 1.09000 * 109.40584 * 297.21954 * 16 15 14 45 45 H 1.09001 * 109.40159 * 177.48074 * 16 15 14 46 46 H 0.97001 * 119.99510 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1270 1.4088 0.0000 4 6 2.1482 -0.9333 1.0556 5 1 1.5044 -1.1077 1.9176 6 7 3.5168 -0.5701 1.4315 7 6 4.0241 -0.9829 2.6099 8 8 3.3477 -1.6555 3.3591 9 6 5.4321 -0.6097 2.9964 10 6 5.6097 0.3731 4.1554 11 6 5.9491 -1.1071 4.3477 12 6 2.0742 -2.0479 -0.0066 13 1 2.9323 -2.7199 -0.0109 14 6 0.7263 -2.7724 0.0267 15 6 0.3439 -3.2000 -1.3919 16 6 0.1267 -1.9497 -2.2454 17 7 1.3317 -1.1272 -2.2366 18 6 1.7117 -0.5131 -3.4000 19 1 2.7507 -0.2715 -3.5688 20 6 0.7614 -0.2008 -4.3625 21 7 -0.5165 -0.1928 -4.0473 22 14 1.2962 0.2078 -6.1051 23 1 1.4620 -1.0484 -6.8794 24 1 0.2643 1.0564 -6.7534 25 1 2.5874 0.9404 -6.0676 26 6 2.1463 -0.9304 -1.0522 27 1 3.1697 -0.6580 -1.3102 28 1 -0.3633 0.1083 1.0220 29 1 -0.3633 0.8308 -0.6048 30 1 -0.3632 -0.9393 -0.4171 31 1 3.2057 1.3462 0.1433 32 1 1.9146 1.8933 -0.9530 33 1 1.6860 1.9903 0.8096 34 1 4.0580 -0.0326 0.8322 35 1 6.1458 -0.5529 2.1744 36 1 6.4401 1.0766 4.0959 37 1 4.7081 0.7495 4.6387 38 1 5.2707 -1.7038 4.9575 39 1 7.0028 -1.3777 4.4147 40 1 0.8028 -3.6537 0.6636 41 1 -0.0368 -2.1025 0.4229 42 1 -0.5752 -3.7852 -1.3613 43 1 1.1450 -3.8010 -1.8221 44 1 -0.7067 -1.3753 -1.8409 45 1 -0.1023 -2.2455 -3.2692 46 1 -1.1805 0.0258 -4.7199 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087266943.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:56 Heat of formation + Delta-G solvation = 44.497690 kcal Electronic energy + Delta-G solvation = -25213.187323 eV Core-core repulsion = 21912.368110 eV Total energy + Delta-G solvation = -3300.819212 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -40.91390 -39.31018 -36.21841 -35.22066 -33.19112 -32.54233 -30.36484 -29.83829 -26.85150 -25.78711 -25.19189 -23.39949 -22.58548 -22.43621 -21.02820 -19.99586 -19.26817 -17.66306 -17.27217 -16.78115 -15.84101 -15.29257 -14.82933 -14.63627 -14.52237 -13.99964 -13.70654 -13.67090 -13.07283 -12.70585 -12.62445 -12.45180 -12.13392 -12.04939 -11.73636 -11.62053 -11.34166 -11.16010 -11.02524 -10.84690 -10.79009 -10.77631 -10.61130 -10.47233 -10.20808 -9.97279 -9.84897 -9.60512 -9.52145 -9.36227 -9.05279 -8.55828 -8.33876 -6.63774 -5.77783 -3.21337 2.57213 3.25373 3.36462 3.43797 3.44078 3.75171 4.48805 4.60192 4.70567 4.73638 4.98116 5.03695 5.16697 5.32329 5.39065 5.40880 5.49907 5.58597 5.63836 5.74291 5.78012 5.85742 5.96227 5.96814 6.07235 6.15285 6.20276 6.26973 6.33970 6.46005 6.49075 6.59984 6.61061 6.67331 6.76783 6.81595 6.84767 6.99876 7.15323 7.23055 7.43899 7.72130 7.74900 7.83819 8.39074 8.45865 9.25256 9.90952 10.34969 11.28138 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.022812 B = 0.004551 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.151317 B = 6150.394233 C = 6638.247845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 C -0.125 4.125 4 C 0.124 3.876 5 H 0.092 0.908 6 N -0.701 5.701 7 C 0.541 3.459 8 O -0.546 6.546 9 C -0.194 4.194 10 C -0.154 4.154 11 C -0.149 4.149 12 C -0.128 4.128 13 H 0.068 0.932 14 C -0.106 4.106 15 C -0.144 4.144 16 C 0.177 3.823 17 N -0.570 5.570 18 C -0.262 4.262 19 H 0.064 0.936 20 C 0.009 3.991 21 N -0.900 5.900 22 Si 0.899 3.101 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.188 3.812 27 H 0.068 0.932 28 H 0.032 0.968 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.041 0.959 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.401 0.599 35 H 0.123 0.877 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.046 0.954 41 H 0.078 0.922 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.040 0.960 45 H 0.068 0.932 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.468 0.096 11.840 14.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.116 4.116 3 C -0.182 4.182 4 C 0.018 3.982 5 H 0.110 0.890 6 N -0.351 5.351 7 C 0.327 3.673 8 O -0.424 6.424 9 C -0.215 4.215 10 C -0.191 4.191 11 C -0.186 4.186 12 C -0.149 4.149 13 H 0.086 0.914 14 C -0.144 4.144 15 C -0.183 4.183 16 C 0.052 3.948 17 N -0.287 5.287 18 C -0.392 4.392 19 H 0.082 0.918 20 C -0.190 4.190 21 N -0.544 5.544 22 Si 0.729 3.271 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.206 1.206 26 C 0.077 3.923 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.237 0.763 35 H 0.141 0.859 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.057 0.943 45 H 0.086 0.914 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.811 -0.353 12.227 14.514 hybrid contribution 0.611 0.592 -1.352 1.597 sum 8.422 0.240 10.876 13.758 Atomic orbital electron populations 1.22000 0.92652 1.05119 0.99251 1.22972 0.96912 0.94677 0.97048 1.21570 0.98616 0.96410 1.01631 1.22330 0.82191 0.97078 0.96597 0.88967 1.45735 1.15514 1.54141 1.19667 1.19615 0.87267 0.79165 0.81216 1.90674 1.61109 1.38843 1.51779 1.22226 0.96147 1.08484 0.94634 1.22929 1.03731 0.93029 0.99438 1.22938 1.01940 0.96938 0.96829 1.23204 0.98030 0.96538 0.97174 0.91379 1.21527 0.96111 0.99131 0.97609 1.22056 0.99963 1.00316 0.95916 1.20648 0.88309 0.87481 0.98314 1.43245 1.27157 1.53013 1.05318 1.19208 0.92168 1.33927 0.93879 0.91843 1.24968 0.95426 0.99579 0.99071 1.70061 0.99636 1.52102 1.32588 0.86369 0.77592 0.77830 0.85289 1.21502 1.21830 1.20638 1.21258 0.94252 0.91331 0.85412 0.91376 0.94899 0.92096 0.88681 0.94030 0.91682 0.93956 0.76301 0.85950 0.87905 0.88304 0.87472 0.88086 0.93508 0.90410 0.92883 0.92899 0.94256 0.91396 0.93705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 7.38 37.16 0.27 -2.24 16 2 C -0.11 -1.98 1.34 -153.86 -0.21 -2.19 16 3 C -0.12 -2.03 8.90 37.16 0.33 -1.70 16 4 C 0.12 2.04 3.30 -66.89 -0.22 1.82 16 5 H 0.09 1.65 7.42 -51.93 -0.39 1.27 16 6 N -0.70 -9.95 4.77 -52.79 -0.25 -10.20 16 7 C 0.54 7.88 7.61 -10.99 -0.08 7.79 16 8 O -0.55 -9.97 15.90 5.55 0.09 -9.88 16 9 C -0.19 -2.05 6.19 -91.77 -0.57 -2.62 16 10 C -0.15 -1.37 10.24 -26.69 -0.27 -1.64 16 11 C -0.15 -1.42 10.05 -26.69 -0.27 -1.69 16 12 C -0.13 -2.28 4.12 -89.88 -0.37 -2.65 16 13 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 14 C -0.11 -1.86 5.18 -26.69 -0.14 -2.00 16 15 C -0.14 -2.72 6.04 -26.76 -0.16 -2.88 16 16 C 0.18 4.04 4.01 -4.40 -0.02 4.02 16 17 N -0.57 -13.28 2.67 -166.87 -0.44 -13.73 16 18 C -0.26 -6.81 9.46 -15.06 -0.14 -6.95 16 19 H 0.06 1.64 7.83 -52.48 -0.41 1.23 16 20 C 0.01 0.23 4.85 -17.43 -0.08 0.14 16 21 N -0.90 -24.82 11.06 55.49 0.61 -24.21 16 22 Si 0.90 21.14 29.58 -169.99 -5.03 16.11 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.19 3.69 3.39 -68.39 -0.23 3.46 16 27 H 0.07 1.34 7.92 -51.93 -0.41 0.93 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 1.27 8.04 -51.93 -0.42 0.85 16 30 H 0.10 1.89 1.92 -51.93 -0.10 1.79 16 31 H 0.04 0.58 5.96 -51.93 -0.31 0.27 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.40 4.96 6.78 -40.82 -0.28 4.68 16 35 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.11 1.19 7.67 -51.93 -0.40 0.80 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 1.36 4.71 -51.93 -0.24 1.12 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.04 0.96 5.62 -51.93 -0.29 0.66 16 45 H 0.07 1.75 6.55 -51.93 -0.34 1.41 16 46 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 345.62 15.07 5.21 5.21 Total: -1.00 -29.16 345.62 -9.35 -38.51 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -7.37 Total: 7.52 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -2.16 Total: -9.32 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.08 Total: -48.14 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.16 -9.35 -38.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087266943.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.008 kcal (2) G-P(sol) polarization free energy of solvation -29.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds