Wall clock time and date at job start Tue Mar 31 2020 06:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 112.96956 * 2 1 4 4 C 1.53875 * 113.68608 * 131.48523 * 2 1 3 5 5 H 1.08999 * 113.63957 * 26.02481 * 4 2 1 6 6 N 1.46504 * 113.63928 * 255.04605 * 4 2 1 7 7 C 1.34777 * 119.99738 * 158.14979 * 6 4 2 8 8 O 1.21276 * 120.00173 * 359.97438 * 7 6 4 9 9 C 1.50707 * 119.99441 * 180.02562 * 7 6 4 10 10 C 1.52996 * 117.49581 * 248.61853 * 9 7 6 11 11 C 1.52994 * 60.00059 * 252.51434 * 10 9 7 12 12 C 1.54148 * 86.93598 * 140.53482 * 4 2 1 13 13 H 1.09004 * 114.25043 * 218.29093 * 12 4 2 14 14 C 1.53062 * 111.68962 * 88.02215 * 12 4 2 15 15 C 1.53022 * 109.41192 * 213.60188 * 14 12 4 16 16 C 1.52944 * 108.93133 * 64.64552 * 15 14 12 17 17 N 1.45893 * 109.88736 * 302.65188 * 16 15 14 18 18 C 1.36938 * 118.48412 * 219.34902 * 17 16 15 19 19 H 1.07999 * 120.00052 * 153.35440 * 18 17 16 20 20 C 1.38811 * 119.99702 * 333.34965 * 18 17 16 21 21 N 1.31611 * 120.00355 * 332.91727 * 20 18 17 22 22 Si 1.86804 * 119.99690 * 152.91719 * 20 18 17 23 23 H 1.48505 * 109.47162 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.47322 * 60.00314 * 22 20 18 25 25 H 1.48495 * 109.47299 * 299.99932 * 22 20 18 26 26 C 1.45097 * 123.03157 * 39.62067 * 17 16 15 27 27 H 1.08991 * 112.25513 * 202.62487 * 26 17 16 28 28 H 1.09002 * 109.46792 * 308.01994 * 1 2 3 29 29 H 1.08999 * 109.46851 * 68.01915 * 1 2 3 30 30 H 1.08999 * 109.46657 * 188.02030 * 1 2 3 31 31 H 1.08998 * 109.47057 * 203.34110 * 3 2 1 32 32 H 1.08997 * 109.47476 * 323.34406 * 3 2 1 33 33 H 1.08999 * 109.47015 * 83.34408 * 3 2 1 34 34 H 0.97001 * 119.99829 * 338.14869 * 6 4 2 35 35 H 1.09001 * 115.55025 * 34.32790 * 9 7 6 36 36 H 1.09005 * 117.49839 * 0.02562 * 10 9 7 37 37 H 1.09000 * 117.50155 * 145.01985 * 10 9 7 38 38 H 1.08998 * 117.49702 * 252.51459 * 11 10 9 39 39 H 1.09001 * 117.49959 * 107.49597 * 11 10 9 40 40 H 1.08998 * 109.47703 * 93.61856 * 14 12 4 41 41 H 1.09002 * 109.47736 * 333.58191 * 14 12 4 42 42 H 1.08995 * 109.56299 * 304.80853 * 15 14 12 43 43 H 1.09001 * 109.65026 * 184.52999 * 15 14 12 44 44 H 1.08994 * 109.40260 * 182.52334 * 16 15 14 45 45 H 1.09004 * 109.40048 * 62.77681 * 16 15 14 46 46 H 0.97001 * 120.00039 * 354.15831 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1271 1.4087 0.0000 4 6 2.1482 -0.9334 1.0556 5 1 1.5021 -1.7656 1.3353 6 7 2.7014 -0.2263 2.2133 7 6 2.8675 -0.8750 3.3829 8 8 2.5586 -2.0440 3.4772 9 6 3.4359 -0.1474 4.5740 10 6 4.8316 -0.5547 5.0505 11 6 3.6000 -0.9389 5.8730 12 6 3.2034 -1.3002 -0.0066 13 1 3.4937 -2.3508 -0.0052 14 6 4.3964 -0.3418 0.0266 15 6 4.9392 -0.1560 -1.3919 16 6 3.8725 0.5318 -2.2453 17 7 2.6453 -0.2572 -2.2366 18 6 1.9315 -0.3674 -3.4001 19 1 1.3060 -1.2312 -3.5701 20 6 2.0120 0.6312 -4.3609 21 7 2.2953 1.8661 -4.0045 22 14 1.7182 0.2223 -6.1598 23 1 1.8606 1.4540 -6.9771 24 1 0.3479 -0.3255 -6.3256 25 1 2.7120 -0.7866 -6.6068 26 6 2.1432 -0.9257 -1.0508 27 1 1.4790 -1.7548 -1.2944 28 1 -0.3633 0.6330 0.8096 29 1 -0.3633 0.3847 -0.9530 30 1 -0.3632 -1.0176 0.1434 31 1 3.1377 1.3750 -0.4072 32 1 1.5099 2.0650 -0.6135 33 1 2.1592 1.7897 1.0207 34 1 2.9480 0.7088 2.1380 35 1 3.1626 0.9046 4.6566 36 1 5.3387 -1.3488 4.5023 37 1 5.4769 0.2293 5.4467 38 1 3.4350 -0.4075 6.8103 39 1 3.2968 -1.9859 5.8662 40 1 5.1778 -0.7563 0.6636 41 1 4.0773 0.6222 0.4229 42 1 5.1788 -1.1287 -1.8214 43 1 5.8371 0.4613 -1.3629 44 1 4.2341 0.6276 -3.2690 45 1 3.6685 1.5230 -1.8403 46 1 2.3642 2.0959 -3.0647 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087266945.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:13 Heat of formation + Delta-G solvation = 42.612239 kcal Electronic energy + Delta-G solvation = -25420.315682 eV Core-core repulsion = 22119.414711 eV Total energy + Delta-G solvation = -3300.900972 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.10501 -39.35439 -36.25529 -35.37099 -33.16620 -32.99272 -30.11682 -30.10458 -27.06805 -25.91826 -25.21429 -23.34574 -22.61335 -22.51100 -20.93464 -19.95087 -19.37855 -17.82678 -17.51600 -17.26020 -15.85380 -15.33006 -15.08437 -14.73067 -14.49758 -13.90929 -13.71276 -13.69360 -13.42566 -12.84698 -12.74116 -12.56854 -12.48511 -11.88577 -11.76389 -11.72079 -11.56257 -11.41932 -11.23231 -10.81515 -10.72037 -10.69693 -10.65460 -10.23243 -10.17309 -10.06405 -9.86396 -9.71744 -9.68437 -9.51608 -9.10170 -8.60568 -8.28097 -6.85025 -6.05747 -3.23029 2.54687 3.26016 3.49835 3.53400 3.70775 3.73405 4.56525 4.60086 4.67446 4.71599 4.89288 4.99319 5.01903 5.20425 5.24986 5.30789 5.38903 5.52496 5.56419 5.59181 5.73621 5.75442 5.83002 5.92556 5.93994 5.98384 6.03318 6.13425 6.17194 6.26254 6.35949 6.43401 6.44133 6.50081 6.61522 6.63328 6.72498 6.81031 6.94442 7.03985 7.06896 7.26216 7.69018 8.06109 8.35527 8.60150 9.17668 9.87008 10.22650 11.20491 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.030950 B = 0.004389 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.481506 B = 6378.175258 C = 6664.569329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.114 4.114 3 C -0.141 4.141 4 C 0.127 3.873 5 H 0.106 0.894 6 N -0.705 5.705 7 C 0.539 3.461 8 O -0.548 6.548 9 C -0.195 4.195 10 C -0.153 4.153 11 C -0.149 4.149 12 C -0.132 4.132 13 H 0.072 0.928 14 C -0.101 4.101 15 C -0.138 4.138 16 C 0.156 3.844 17 N -0.572 5.572 18 C -0.360 4.360 19 H 0.056 0.944 20 C -0.017 4.017 21 N -0.913 5.913 22 Si 1.058 2.942 23 H -0.287 1.287 24 H -0.294 1.294 25 H -0.294 1.294 26 C 0.191 3.809 27 H 0.076 0.924 28 H 0.040 0.960 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.033 0.967 34 H 0.400 0.600 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.045 0.955 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.028 0.972 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.801 -0.937 14.942 15.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.118 4.118 3 C -0.197 4.197 4 C 0.022 3.978 5 H 0.124 0.876 6 N -0.356 5.356 7 C 0.326 3.674 8 O -0.426 6.426 9 C -0.216 4.216 10 C -0.191 4.191 11 C -0.187 4.187 12 C -0.153 4.153 13 H 0.090 0.910 14 C -0.138 4.138 15 C -0.177 4.177 16 C 0.030 3.970 17 N -0.290 5.290 18 C -0.489 4.489 19 H 0.074 0.926 20 C -0.220 4.220 21 N -0.553 5.553 22 Si 0.888 3.112 23 H -0.212 1.212 24 H -0.221 1.221 25 H -0.221 1.221 26 C 0.080 3.920 27 H 0.094 0.906 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.237 0.763 35 H 0.139 0.861 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.045 0.955 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.597 -1.128 13.409 13.929 hybrid contribution -0.104 -0.143 1.565 1.575 sum 3.493 -1.271 14.974 15.428 Atomic orbital electron populations 1.21615 0.94707 1.00543 1.01423 1.22913 0.95331 0.96356 0.97226 1.22047 1.03747 0.94873 0.99083 1.22789 0.96072 0.96139 0.82791 0.87596 1.46022 1.64164 1.14896 1.10481 1.19652 0.77686 0.86724 0.83387 1.90667 1.51088 1.16569 1.84291 1.22235 1.02882 1.00818 0.95693 1.22914 0.89632 1.03560 1.02947 1.22920 1.00910 1.01701 0.93130 1.23296 0.95846 0.99138 0.97026 0.90997 1.21454 0.96018 0.99230 0.97115 1.21940 0.98651 1.01208 0.95919 1.20825 0.84950 0.92620 0.98568 1.43226 1.21722 1.58274 1.05795 1.20008 1.28433 1.04717 0.95758 0.92643 1.25707 0.99366 0.92240 1.04654 1.70797 1.47573 1.16865 1.20040 0.83623 0.75988 0.75273 0.76280 1.21216 1.22067 1.22136 1.20989 0.92301 0.93723 0.84983 0.90641 0.94082 0.91811 0.93391 0.88955 0.92126 0.94803 0.76307 0.86106 0.88265 0.87912 0.88118 0.87478 0.93582 0.90941 0.92356 0.92751 0.91618 0.95481 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 9.08 37.16 0.34 -1.80 16 2 C -0.11 -1.98 1.34 -154.11 -0.21 -2.19 16 3 C -0.14 -2.40 7.01 37.16 0.26 -2.14 16 4 C 0.13 2.05 3.58 -66.89 -0.24 1.81 16 5 H 0.11 1.84 7.42 -51.93 -0.39 1.45 16 6 N -0.71 -9.78 4.32 -52.79 -0.23 -10.00 16 7 C 0.54 7.74 7.61 -10.98 -0.08 7.66 16 8 O -0.55 -9.89 15.90 5.56 0.09 -9.80 16 9 C -0.20 -2.05 6.19 -91.77 -0.57 -2.62 16 10 C -0.15 -1.38 10.23 -26.74 -0.27 -1.66 16 11 C -0.15 -1.41 10.04 -26.74 -0.27 -1.68 16 12 C -0.13 -2.29 4.31 -89.76 -0.39 -2.68 16 13 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 14 C -0.10 -1.63 4.66 -26.69 -0.12 -1.75 16 15 C -0.14 -2.49 6.04 -26.75 -0.16 -2.65 16 16 C 0.16 3.42 3.90 -4.40 -0.02 3.40 16 17 N -0.57 -13.29 2.54 -167.03 -0.42 -13.71 16 18 C -0.36 -9.58 9.33 -15.06 -0.14 -9.72 16 19 H 0.06 1.51 7.93 -52.49 -0.42 1.09 16 20 C -0.02 -0.46 4.53 -17.43 -0.08 -0.54 16 21 N -0.91 -26.00 12.61 55.49 0.70 -25.30 16 22 Si 1.06 24.69 30.00 -169.99 -5.10 19.59 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 C 0.19 3.82 3.52 -68.53 -0.24 3.58 16 27 H 0.08 1.58 7.91 -51.93 -0.41 1.17 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.05 0.76 8.02 -51.93 -0.42 0.35 16 31 H 0.09 1.65 1.93 -51.93 -0.10 1.55 16 32 H 0.06 1.17 8.04 -51.93 -0.42 0.75 16 33 H 0.03 0.47 6.29 -51.93 -0.33 0.14 16 34 H 0.40 4.88 5.61 -40.82 -0.23 4.66 16 35 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.11 1.19 7.67 -51.93 -0.40 0.79 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 1.11 3.76 -51.93 -0.20 0.92 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.07 1.65 6.85 -51.93 -0.36 1.29 16 45 H 0.03 0.62 4.75 -51.93 -0.25 0.37 16 46 H 0.27 7.62 6.38 -40.82 -0.26 7.36 16 LS Contribution 342.04 15.07 5.15 5.15 Total: -1.00 -29.89 342.04 -9.18 -39.07 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -7.18 Total: 7.98 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -2.19 Total: -12.97 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.05 Total: -49.02 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.10 Total: 19.59 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.89 -9.18 -39.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087266945.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.685 kcal (2) G-P(sol) polarization free energy of solvation -29.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds