Wall clock time and date at job start Tue Mar 31 2020 06:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 113.30961 * 2 1 4 4 C 1.55785 * 114.08713 * 132.78557 * 2 1 3 5 5 H 1.08998 * 114.12779 * 322.86914 * 4 2 1 6 6 N 1.46495 * 114.12563 * 190.48982 * 4 2 1 7 7 C 1.34778 * 119.99889 * 155.00358 * 6 4 2 8 8 O 1.21282 * 120.00203 * 359.97438 * 7 6 4 9 9 C 1.50695 * 120.00027 * 179.72258 * 7 6 4 10 10 C 1.53005 * 117.50179 * 249.02185 * 9 7 6 11 11 C 1.53001 * 117.50013 * 180.36244 * 9 7 6 12 12 C 1.50004 * 83.86363 * 76.76814 * 4 2 1 13 13 H 1.09001 * 112.50626 * 283.88703 * 12 4 2 14 14 C 1.51203 * 126.18094 * 141.49162 * 12 4 2 15 15 C 1.54084 * 106.19534 * 198.57142 * 14 12 4 16 16 C 1.52493 * 112.67743 * 55.43300 * 15 14 12 17 17 N 1.48404 * 111.87221 * 313.21767 * 16 15 14 18 18 C 1.36929 * 123.16834 * 231.81618 * 17 16 15 19 19 H 1.08007 * 120.00704 * 150.32839 * 18 17 16 20 20 C 1.38811 * 120.00135 * 330.32726 * 18 17 16 21 21 N 1.31626 * 119.99809 * 347.88320 * 20 18 17 22 22 Si 1.86797 * 120.00469 * 167.88498 * 20 18 17 23 23 H 1.48505 * 109.47064 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47355 * 120.00125 * 22 20 18 25 25 H 1.48508 * 109.47196 * 240.00228 * 22 20 18 26 26 C 1.45391 * 113.66723 * 51.83494 * 17 16 15 27 27 H 1.08996 * 111.71005 * 59.54700 * 26 17 16 28 28 H 1.09002 * 109.46849 * 280.11774 * 1 2 3 29 29 H 1.08997 * 109.47079 * 40.12747 * 1 2 3 30 30 H 1.09005 * 109.46867 * 160.12522 * 1 2 3 31 31 H 1.09003 * 109.47148 * 173.28996 * 3 2 1 32 32 H 1.09009 * 109.46757 * 293.28199 * 3 2 1 33 33 H 1.08993 * 109.47630 * 53.28432 * 3 2 1 34 34 H 0.96996 * 120.00193 * 334.99932 * 6 4 2 35 35 H 1.09002 * 115.55128 * 34.69564 * 9 7 6 36 36 H 1.09002 * 117.49351 * 359.97438 * 10 9 7 37 37 H 1.08998 * 117.49737 * 145.01853 * 10 9 7 38 38 H 1.09002 * 117.49765 * 214.97987 * 11 9 7 39 39 H 1.09001 * 117.49576 * 359.97234 * 11 9 7 40 40 H 1.09003 * 110.09926 * 317.73726 * 14 12 4 41 41 H 1.08999 * 110.10022 * 79.39642 * 14 12 4 42 42 H 1.09000 * 108.84043 * 176.25971 * 15 14 12 43 43 H 1.09006 * 108.84452 * 294.60643 * 15 14 12 44 44 H 1.09004 * 109.00027 * 73.82999 * 16 15 14 45 45 H 1.08992 * 109.00657 * 192.67822 * 16 15 14 46 46 H 0.96994 * 120.00060 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1354 1.4051 0.0000 4 6 2.1658 -0.9660 1.0438 5 1 1.6236 -1.0215 1.9877 6 7 3.6104 -0.7943 1.2165 7 6 4.1987 -1.1586 2.3731 8 8 3.5323 -1.6282 3.2709 9 6 5.6857 -0.9877 2.5485 10 6 6.5394 -2.2556 2.6168 11 6 6.2950 -1.4279 3.8811 12 6 1.7887 -2.0268 0.0524 13 1 0.7224 -2.2523 0.0680 14 6 2.6058 -3.2488 -0.3015 15 6 2.0620 -3.7529 -1.6522 16 6 2.0858 -2.6781 -2.7337 17 7 1.5368 -1.3891 -2.2443 18 6 0.5532 -0.6971 -2.8988 19 1 -0.1343 -0.0781 -2.3412 20 6 0.4394 -0.7909 -4.2791 21 7 1.4050 -1.3428 -4.9830 22 14 -1.0840 -0.1339 -5.1376 23 1 -2.0148 0.4332 -4.1290 24 1 -0.6912 0.9260 -6.1006 25 1 -1.7574 -1.2393 -5.8656 26 6 2.1421 -0.9301 -1.0046 27 1 3.2175 -0.7870 -1.1098 28 1 -0.3633 0.1805 1.0117 29 1 -0.3633 0.7857 -0.6623 30 1 -0.3633 -0.9665 -0.3494 31 1 3.2165 1.3349 0.1201 32 1 1.9061 1.8995 -0.9441 33 1 1.7150 1.9819 0.8237 34 1 4.1434 -0.4184 0.4986 35 1 6.1193 -0.1146 2.0608 36 1 6.0254 -3.2133 2.5353 37 1 7.5347 -2.2165 2.1743 38 1 7.1298 -0.8447 4.2698 39 1 5.6203 -1.8407 4.6311 40 1 3.6580 -2.9808 -0.3978 41 1 2.4819 -4.0164 0.4624 42 1 2.6669 -4.5976 -1.9820 43 1 1.0349 -4.0908 -1.5142 44 1 3.1148 -2.5249 -3.0591 45 1 1.4919 -3.0159 -3.5829 46 1 1.3254 -1.4087 -5.9474 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087266946.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:24 Heat of formation + Delta-G solvation = 54.524789 kcal Electronic energy + Delta-G solvation = -25275.693958 eV Core-core repulsion = 21975.309553 eV Total energy + Delta-G solvation = -3300.384405 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 4.86 seconds Orbital eigenvalues (eV) -41.18828 -39.25927 -36.13271 -35.19788 -33.28061 -32.81836 -30.19539 -29.34860 -27.16203 -25.97612 -25.22530 -23.61038 -22.55130 -22.37430 -20.53502 -20.12785 -19.12465 -18.14918 -17.42868 -16.63160 -15.48959 -15.26432 -14.87303 -14.39086 -14.30374 -14.03621 -13.77157 -13.71921 -13.31172 -12.81570 -12.58998 -12.54115 -12.39560 -12.04817 -11.77444 -11.69141 -11.34063 -11.14763 -11.04744 -10.86037 -10.75927 -10.67374 -10.63211 -10.38518 -10.19669 -10.07243 -9.93425 -9.88217 -9.68490 -9.29939 -8.86093 -8.61965 -8.40606 -6.53095 -5.76217 -3.22196 2.58998 3.23156 3.35631 3.43988 3.44883 3.78520 4.48262 4.63008 4.71874 4.73894 4.77809 4.98710 5.06121 5.20316 5.29938 5.45505 5.46251 5.58925 5.61149 5.76593 5.81963 5.90100 5.92901 5.98848 6.00635 6.03243 6.07323 6.27667 6.29687 6.37823 6.41359 6.49989 6.61012 6.63546 6.66312 6.74090 6.80571 6.90457 7.04929 7.15928 7.40185 7.65258 7.70791 7.83785 8.39304 8.43435 9.18660 9.83937 10.51358 11.31708 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.024161 B = 0.004737 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.608109 B = 5909.988549 C = 6376.831260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.068 4.068 3 C -0.132 4.132 4 C 0.140 3.860 5 H 0.096 0.904 6 N -0.697 5.697 7 C 0.544 3.456 8 O -0.547 6.547 9 C -0.194 4.194 10 C -0.152 4.152 11 C -0.149 4.149 12 C -0.172 4.172 13 H 0.099 0.901 14 C -0.083 4.083 15 C -0.136 4.136 16 C 0.170 3.830 17 N -0.571 5.571 18 C -0.244 4.244 19 H 0.075 0.925 20 C 0.002 3.998 21 N -0.905 5.905 22 Si 0.898 3.102 23 H -0.277 1.277 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.153 3.847 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.402 0.598 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.049 0.951 41 H 0.040 0.960 42 H 0.047 0.953 43 H 0.049 0.951 44 H 0.014 0.986 45 H 0.084 0.916 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.522 0.715 12.251 14.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.070 4.070 3 C -0.190 4.190 4 C 0.035 3.965 5 H 0.114 0.886 6 N -0.347 5.347 7 C 0.330 3.670 8 O -0.424 6.424 9 C -0.215 4.215 10 C -0.190 4.190 11 C -0.187 4.187 12 C -0.194 4.194 13 H 0.117 0.883 14 C -0.121 4.121 15 C -0.176 4.176 16 C 0.045 3.955 17 N -0.292 5.292 18 C -0.373 4.373 19 H 0.093 0.907 20 C -0.196 4.196 21 N -0.550 5.550 22 Si 0.728 3.272 23 H -0.202 1.202 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.044 3.956 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.238 0.762 35 H 0.140 0.860 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.033 0.967 45 H 0.103 0.897 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.001 0.380 12.637 14.451 hybrid contribution -0.381 0.528 -1.188 1.355 sum 6.620 0.908 11.448 13.256 Atomic orbital electron populations 1.21631 0.91990 1.03695 1.00060 1.21890 0.96569 0.93489 0.95009 1.21659 0.99542 0.96047 1.01710 1.21525 0.80190 0.97005 0.97827 0.88638 1.45651 1.08646 1.64000 1.16408 1.19578 0.88252 0.77190 0.81932 1.90669 1.65279 1.44965 1.41518 1.22208 0.92530 1.01544 1.05230 1.22936 1.00147 0.94428 1.01485 1.22935 1.02281 1.02635 0.90817 1.23326 1.00905 0.96181 0.98958 0.88318 1.21003 0.98342 0.96382 0.96379 1.22105 0.99840 0.99247 0.96359 1.20760 0.97234 0.83606 0.93909 1.43886 1.41872 1.18875 1.24602 1.19322 1.05393 1.24035 0.88564 0.90711 1.25170 0.97429 1.00330 0.96700 1.69986 1.31022 1.48475 1.05521 0.86286 0.82977 0.78267 0.79646 1.20225 1.21810 1.21715 1.21705 0.94074 0.92686 0.87123 0.94006 0.93849 0.91745 0.90731 0.93396 0.91826 0.93260 0.76221 0.86002 0.88211 0.87873 0.88131 0.87493 0.93179 0.94099 0.93449 0.93220 0.96740 0.89741 0.93829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 7.31 37.16 0.27 -1.68 16 2 C -0.07 -1.14 1.39 -159.14 -0.22 -1.36 16 3 C -0.13 -1.98 9.12 37.16 0.34 -1.64 16 4 C 0.14 2.25 3.98 -71.83 -0.29 1.96 16 5 H 0.10 1.62 7.45 -51.93 -0.39 1.24 16 6 N -0.70 -9.85 4.27 -57.66 -0.25 -10.09 16 7 C 0.54 7.85 7.61 -10.99 -0.08 7.77 16 8 O -0.55 -9.82 15.85 5.56 0.09 -9.73 16 9 C -0.19 -2.08 6.19 -91.77 -0.57 -2.65 16 10 C -0.15 -1.44 10.24 -26.69 -0.27 -1.72 16 11 C -0.15 -1.43 10.05 -26.69 -0.27 -1.70 16 12 C -0.17 -3.06 2.95 -95.82 -0.28 -3.35 16 13 H 0.10 1.88 6.07 -51.93 -0.32 1.57 16 14 C -0.08 -1.47 5.94 -27.07 -0.16 -1.63 16 15 C -0.14 -2.61 5.90 -26.42 -0.16 -2.76 16 16 C 0.17 3.94 5.28 -3.25 -0.02 3.92 16 17 N -0.57 -13.43 2.87 -169.41 -0.49 -13.92 16 18 C -0.24 -6.28 9.10 -15.06 -0.14 -6.42 16 19 H 0.08 1.87 5.18 -52.48 -0.27 1.60 16 20 C 0.00 0.06 5.11 -17.43 -0.09 -0.03 16 21 N -0.91 -25.66 11.21 55.49 0.62 -25.04 16 22 Si 0.90 21.24 29.57 -169.99 -5.03 16.22 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 C 0.15 2.96 2.90 -72.12 -0.21 2.75 16 27 H 0.04 0.84 6.51 -51.93 -0.34 0.50 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 1.12 7.04 -51.93 -0.37 0.76 16 30 H 0.07 1.38 5.76 -51.93 -0.30 1.08 16 31 H 0.05 0.65 6.57 -51.93 -0.34 0.30 16 32 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.40 5.17 6.30 -40.82 -0.26 4.92 16 35 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.11 1.19 7.67 -51.93 -0.40 0.79 16 40 H 0.05 0.87 7.97 -51.93 -0.41 0.45 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 2.21 6.31 -51.93 -0.33 1.88 16 46 H 0.25 6.95 8.31 -40.82 -0.34 6.62 16 LS Contribution 348.86 15.07 5.26 5.26 Total: -1.00 -29.72 348.86 -9.43 -39.15 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -7.50 Total: 6.70 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -2.14 Total: -8.54 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.11 Total: -49.05 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.72 -9.43 -39.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087266946.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.674 kcal (2) G-P(sol) polarization free energy of solvation -29.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.86 seconds