Wall clock time and date at job start Tue Mar 31 2020 06:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47348 * 2 1 4 4 C 1.50709 * 115.54571 * 65.20525 * 3 2 1 5 5 O 1.21280 * 119.99860 * 246.46656 * 4 3 2 6 6 N 1.34773 * 120.00188 * 66.46666 * 4 3 2 7 7 C 1.47375 * 125.74205 * 175.05275 * 6 4 3 8 8 C 1.55408 * 106.74162 * 179.02985 * 7 6 4 9 9 H 1.09005 * 112.76059 * 146.40910 * 8 7 6 10 10 C 1.52904 * 106.57432 * 270.28699 * 8 7 6 11 11 C 1.51563 * 111.66840 * 169.88865 * 10 8 7 12 12 N 1.44353 * 113.01503 * 320.11678 * 11 10 8 13 13 C 1.36936 * 116.42806 * 188.03354 * 12 11 10 14 14 H 1.07997 * 119.99845 * 155.41134 * 13 12 11 15 15 C 1.38818 * 119.99806 * 335.40702 * 13 12 11 16 16 N 1.31615 * 119.99782 * 4.91824 * 15 13 12 17 17 Si 1.86798 * 119.99834 * 184.91654 * 15 13 12 18 18 H 1.48504 * 109.47027 * 59.99927 * 17 15 13 19 19 H 1.48497 * 109.47115 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46991 * 300.00025 * 17 15 13 21 21 C 1.43981 * 127.14688 * 8.00771 * 12 11 10 22 22 C 1.50327 * 116.59436 * 3.60641 * 21 12 11 23 23 H 1.08994 * 110.11939 * 140.46164 * 22 21 12 24 24 C 1.47932 * 125.74009 * 354.75085 * 6 4 3 25 25 C 1.52996 * 117.50195 * 279.53744 * 3 2 1 26 26 C 1.52996 * 117.50094 * 210.87528 * 3 2 1 27 27 H 1.08996 * 109.46908 * 294.77386 * 1 2 3 28 28 H 1.08997 * 109.47591 * 54.77581 * 1 2 3 29 29 H 1.09004 * 109.47094 * 174.77401 * 1 2 3 30 30 H 1.09001 * 109.47664 * 120.00182 * 2 1 3 31 31 H 1.09008 * 109.47543 * 240.00418 * 2 1 3 32 32 H 1.09002 * 110.00592 * 298.35098 * 7 6 4 33 33 H 1.08999 * 110.00529 * 59.66793 * 7 6 4 34 34 H 1.09007 * 109.03972 * 290.44780 * 10 8 7 35 35 H 1.08999 * 109.04500 * 49.39102 * 10 8 7 36 36 H 1.09004 * 108.78266 * 81.03372 * 11 10 8 37 37 H 1.09007 * 108.77482 * 199.21032 * 11 10 8 38 38 H 0.97000 * 119.99545 * 180.02562 * 16 15 13 39 39 H 1.08991 * 108.11356 * 124.66730 * 21 12 11 40 40 H 1.09002 * 108.11504 * 241.33668 * 21 12 11 41 41 H 1.08998 * 110.56709 * 274.17884 * 24 6 4 42 42 H 1.09004 * 110.56901 * 37.02819 * 24 6 4 43 43 H 1.09006 * 117.49455 * 359.97438 * 25 3 2 44 44 H 1.08993 * 117.50059 * 145.01390 * 25 3 2 45 45 H 1.09002 * 117.49821 * 214.97989 * 26 3 2 46 46 H 1.08999 * 117.50387 * 359.97424 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7190 2.2453 1.2344 5 8 0.9633 3.1912 1.1631 6 7 2.2717 1.9121 2.4176 7 6 2.1294 2.6648 3.6766 8 6 2.9209 1.8798 4.7594 9 1 3.3802 2.5323 5.5020 10 6 1.9401 0.8855 5.3817 11 6 2.6466 -0.1096 6.2804 12 7 3.9108 -0.5554 5.7448 13 6 4.5284 -1.5794 6.4120 14 1 5.2270 -2.2185 5.8927 15 6 4.2564 -1.7958 7.7560 16 7 3.3345 -1.0801 8.3644 17 14 5.1988 -3.1029 8.7009 18 1 6.6488 -2.7834 8.6751 19 1 4.7236 -3.1361 10.1074 20 1 4.9727 -4.4285 8.0711 21 6 4.5935 -0.0420 4.5858 22 6 3.9610 1.1362 3.8990 23 1 4.7291 1.8397 3.5779 24 6 3.1183 0.7260 2.6724 25 6 2.0635 2.1835 -1.3383 26 6 3.3736 1.7203 -0.6964 27 1 -0.3633 0.4306 0.9331 28 1 -0.3634 0.5927 -0.8394 29 1 -0.3633 -1.0234 -0.0936 30 1 1.8934 -0.5138 0.8899 31 1 1.8934 -0.5138 -0.8901 32 1 2.5462 3.6654 3.5621 33 1 1.0777 2.7289 3.9559 34 1 1.2026 1.4333 5.9684 35 1 1.4294 0.3439 4.5854 36 1 2.8212 0.3558 7.2505 37 1 2.0002 -0.9760 6.4209 38 1 3.1448 -1.2311 9.3036 39 1 5.5970 0.2569 4.8883 40 1 4.6873 -0.8512 3.8615 41 1 2.5012 -0.1426 2.9021 42 1 3.7620 0.5239 1.8163 43 1 1.7160 1.6432 -2.2189 44 1 1.8472 3.2517 -1.3260 45 1 4.0188 2.4840 -0.2620 46 1 3.8880 0.8753 -1.1543 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088094469.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:41 Heat of formation + Delta-G solvation = 17.802244 kcal Electronic energy + Delta-G solvation = -24899.287599 eV Core-core repulsion = 21597.310785 eV Total energy + Delta-G solvation = -3301.976814 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.58553 -38.88754 -36.82247 -35.61855 -32.60374 -32.01797 -31.51415 -30.11114 -28.02772 -25.67435 -24.80801 -23.65115 -22.67871 -22.36252 -21.69226 -20.94579 -18.61460 -17.74915 -17.17920 -16.59393 -15.94397 -15.59110 -15.14242 -14.89128 -14.22843 -14.06429 -13.91126 -13.67993 -13.49763 -13.05091 -12.95472 -12.78718 -12.65565 -12.24487 -12.15934 -11.79187 -11.71010 -11.63571 -11.32390 -11.27998 -10.88004 -10.78718 -10.55556 -10.46861 -10.23178 -10.18058 -10.15471 -9.76972 -9.67978 -9.57105 -9.50271 -8.48692 -8.39534 -6.69901 -5.57812 -3.21469 2.63976 3.00481 3.37638 3.43273 3.43897 3.57152 4.35593 4.45908 4.50582 4.65187 4.75687 4.79321 4.96930 5.15525 5.20513 5.31967 5.40353 5.40755 5.41326 5.44669 5.57283 5.63201 5.66617 5.71530 5.81833 5.83760 5.87567 5.93341 5.95373 5.99642 6.10479 6.14947 6.18906 6.27832 6.44170 6.59593 6.64511 6.73523 6.83620 6.84302 7.58094 7.64412 7.84094 8.11884 8.25504 8.56379 9.34462 10.03540 10.28728 11.26838 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.026437 B = 0.003989 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.884034 B = 7017.368794 C = 7279.956268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 C -0.151 4.151 4 C 0.565 3.435 5 O -0.547 6.547 6 N -0.610 5.610 7 C 0.108 3.892 8 C -0.081 4.081 9 H 0.096 0.904 10 C -0.131 4.131 11 C 0.175 3.825 12 N -0.599 5.599 13 C -0.260 4.260 14 H 0.068 0.932 15 C 0.006 3.994 16 N -0.908 5.908 17 Si 0.906 3.094 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.284 1.284 21 C 0.181 3.819 22 C -0.098 4.098 23 H 0.074 0.926 24 C 0.109 3.891 25 C -0.145 4.145 26 C -0.160 4.160 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.043 0.957 36 H 0.088 0.912 37 H 0.029 0.971 38 H 0.250 0.750 39 H 0.020 0.980 40 H 0.012 0.988 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.368 4.523 -15.513 16.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.122 4.122 3 C -0.154 4.154 4 C 0.353 3.647 5 O -0.425 6.425 6 N -0.343 5.343 7 C -0.014 4.014 8 C -0.100 4.100 9 H 0.114 0.886 10 C -0.169 4.169 11 C 0.051 3.949 12 N -0.325 5.325 13 C -0.389 4.389 14 H 0.085 0.915 15 C -0.191 4.191 16 N -0.555 5.555 17 Si 0.736 3.264 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.211 1.211 21 C 0.054 3.946 22 C -0.118 4.118 23 H 0.093 0.907 24 C -0.014 4.014 25 C -0.182 4.182 26 C -0.197 4.197 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.047 0.953 38 H 0.062 0.938 39 H 0.038 0.962 40 H 0.029 0.971 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.115 0.885 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.915 5.090 -15.473 16.401 hybrid contribution 0.454 -0.766 0.558 1.051 sum -1.461 4.324 -14.915 15.598 Atomic orbital electron populations 1.21710 0.95048 1.01587 1.02325 1.21101 0.96483 0.91544 1.03028 1.21416 1.03755 0.97490 0.92737 1.19133 0.79408 0.83654 0.82501 1.90671 1.35979 1.30308 1.85507 1.48634 1.50408 1.26722 1.08558 1.22439 1.00762 0.94976 0.83232 1.22067 0.95617 0.96763 0.95541 0.88583 1.21877 0.97629 0.97790 0.99589 1.20600 0.84609 0.94548 0.95161 1.42740 1.20262 1.40130 1.29393 1.19230 1.22036 1.06332 0.91332 0.91454 1.25190 0.98344 0.98990 0.96543 1.70076 1.32824 1.42078 1.10502 0.86313 0.79924 0.81044 0.79155 1.20948 1.21597 1.21092 1.19234 0.94179 0.91910 0.89301 1.21763 0.96987 0.98502 0.94538 0.90739 1.22606 0.92737 0.88020 0.98008 1.22982 0.99945 1.01163 0.94159 1.23099 0.90143 1.03707 1.02725 0.92765 0.92462 0.92353 0.90687 0.90948 0.92099 0.91409 0.92479 0.93790 0.89472 0.95326 0.93832 0.96184 0.97062 0.90661 0.90640 0.88023 0.88062 0.88508 0.87776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.71 37.15 0.36 -1.27 16 2 C -0.08 -0.88 5.70 -26.73 -0.15 -1.04 16 3 C -0.15 -1.77 1.01 -155.66 -0.16 -1.93 16 4 C 0.56 8.65 6.60 -10.98 -0.07 8.58 16 5 O -0.55 -10.18 17.06 5.56 0.09 -10.08 16 6 N -0.61 -9.10 3.34 -169.47 -0.57 -9.67 16 7 C 0.11 1.64 6.25 -2.29 -0.01 1.63 16 8 C -0.08 -1.32 3.60 -88.81 -0.32 -1.64 16 9 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 10 C -0.13 -2.43 4.79 -27.51 -0.13 -2.56 16 11 C 0.17 4.12 4.66 -5.91 -0.03 4.09 16 12 N -0.60 -14.41 3.25 -179.38 -0.58 -14.99 16 13 C -0.26 -6.92 9.42 -15.06 -0.14 -7.06 16 14 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 15 C 0.01 0.17 5.40 -17.43 -0.09 0.08 16 16 N -0.91 -25.39 9.52 55.49 0.53 -24.87 16 17 Si 0.91 21.28 29.56 -169.99 -5.02 16.26 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.18 3.54 5.73 -6.71 -0.04 3.50 16 22 C -0.10 -1.56 2.92 -90.66 -0.26 -1.83 16 23 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 24 C 0.11 1.55 4.16 -2.54 -0.01 1.53 16 25 C -0.15 -1.47 9.78 -26.70 -0.26 -1.73 16 26 C -0.16 -1.53 9.62 -26.70 -0.26 -1.79 16 27 H 0.05 0.70 7.87 -51.93 -0.41 0.29 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.84 6.19 -51.93 -0.32 0.52 16 31 H 0.07 0.62 8.09 -51.92 -0.42 0.20 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.07 7.78 -51.93 -0.40 0.67 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.04 0.81 6.68 -51.93 -0.35 0.47 16 36 H 0.09 2.32 5.91 -51.93 -0.31 2.01 16 37 H 0.03 0.76 7.74 -51.93 -0.40 0.35 16 38 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 39 H 0.02 0.41 8.13 -51.93 -0.42 -0.01 16 40 H 0.01 0.22 7.80 -51.93 -0.40 -0.18 16 41 H 0.08 1.17 6.72 -51.93 -0.35 0.82 16 42 H 0.08 0.93 7.33 -51.93 -0.38 0.55 16 43 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.10 1.14 8.01 -51.93 -0.42 0.72 16 45 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 351.08 15.07 5.29 5.29 Total: -1.00 -29.84 351.08 -9.78 -39.61 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -7.93 Total: -0.14 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -1.58 Total: -1.42 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: -0.62 Total: -49.52 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.84 -9.78 -39.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088094469.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.413 kcal (2) G-P(sol) polarization free energy of solvation -29.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds