Wall clock time and date at job start Tue Mar 31 2020 08:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46954 * 2 1 4 4 C 1.53005 * 109.46954 * 179.97438 * 3 2 1 5 5 H 1.08996 * 115.54933 * 29.32903 * 4 3 2 6 6 C 1.53000 * 117.49638 * 243.62197 * 4 3 2 7 7 C 1.53001 * 117.49615 * 174.99800 * 4 3 2 8 8 H 1.08992 * 117.50331 * 359.97347 * 7 4 3 9 9 C 1.50706 * 117.49637 * 214.97581 * 7 4 3 10 10 O 1.21286 * 119.99922 * 0.02562 * 9 7 4 11 11 N 1.34774 * 120.00048 * 179.97438 * 9 7 4 12 12 C 1.46496 * 119.99959 * 179.97438 * 11 9 7 13 13 H 1.09002 * 110.56048 * 36.97023 * 12 11 9 14 14 C 1.54849 * 110.62409 * 160.03955 * 12 11 9 15 15 C 1.55847 * 103.44412 * 118.49256 * 14 12 11 16 16 H 1.09008 * 116.12948 * 159.14917 * 15 14 12 17 17 C 1.55837 * 105.06579 * 288.17777 * 15 14 12 18 18 C 1.54853 * 103.44988 * 71.82209 * 17 15 14 19 19 C 1.55841 * 110.62920 * 274.06685 * 12 11 9 20 20 H 1.09001 * 115.55866 * 81.95166 * 19 12 11 21 21 N 1.50239 * 101.05193 * 208.56918 * 19 12 11 22 22 C 1.36937 * 130.84383 * 233.93292 * 21 19 12 23 23 H 1.07999 * 119.99584 * 0.02562 * 22 21 19 24 24 C 1.38815 * 119.99993 * 180.02562 * 22 21 19 25 25 N 1.31621 * 120.00151 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99806 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47459 * 90.00195 * 26 24 22 28 28 H 1.48504 * 109.47057 * 210.00094 * 26 24 22 29 29 H 1.48502 * 109.47083 * 329.99935 * 26 24 22 30 30 H 1.08999 * 109.46882 * 300.00226 * 1 2 3 31 31 H 1.08996 * 109.47116 * 60.00208 * 1 2 3 32 32 H 1.09000 * 109.47092 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46882 * 239.99774 * 2 1 3 34 34 H 1.08997 * 109.46609 * 119.99669 * 2 1 3 35 35 H 1.08994 * 109.47486 * 59.99704 * 3 2 1 36 36 H 1.09005 * 109.46905 * 299.99286 * 3 2 1 37 37 H 1.08997 * 117.49406 * 145.02512 * 6 4 3 38 38 H 1.08999 * 117.50080 * 359.97438 * 6 4 3 39 39 H 0.96996 * 119.99627 * 0.02562 * 11 9 7 40 40 H 1.08997 * 110.63094 * 236.97812 * 14 12 11 41 41 H 1.09003 * 110.62992 * 0.02562 * 14 12 11 42 42 H 1.09009 * 110.62873 * 313.33253 * 17 15 14 43 43 H 1.09002 * 110.76499 * 190.37704 * 17 15 14 44 44 H 1.09003 * 110.62831 * 241.51402 * 18 17 15 45 45 H 1.08999 * 110.76511 * 118.55147 * 18 17 15 46 46 H 0.96991 * 120.00089 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 4.0403 0.5851 -0.4807 6 6 4.2759 2.0457 1.2167 7 6 4.2765 2.7945 -0.1176 8 1 3.6514 3.6839 -0.1963 9 6 5.5697 2.8386 -0.8902 10 8 6.0122 1.8261 -1.3902 11 7 6.2339 4.0034 -1.0263 12 6 7.4913 4.0461 -1.7768 13 1 7.4482 3.3749 -2.6345 14 6 7.8084 5.4932 -2.2278 15 6 9.1594 5.8065 -1.5167 16 1 9.7522 6.6139 -1.9467 17 6 8.7961 5.9679 -0.0099 18 6 8.4789 4.5208 0.4411 19 6 8.6938 3.6822 -0.8547 20 1 8.8639 2.6164 -0.7024 21 7 9.8046 4.4497 -1.5137 22 6 11.0287 4.0392 -1.9701 23 1 11.3198 3.0033 -1.8778 24 6 11.8953 4.9545 -2.5516 25 7 11.5407 6.2171 -2.6637 26 14 13.5647 4.3944 -3.1749 27 1 13.4485 3.9776 -4.5954 28 1 14.5350 5.5133 -3.0652 29 1 14.0381 3.2470 -2.3595 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9563 -0.8901 37 1 5.2109 1.5850 1.5356 38 1 3.6504 2.4429 2.0161 39 1 5.8798 4.8132 -0.6267 40 1 7.9243 5.5413 -3.3105 41 1 7.0304 6.1791 -1.8926 42 1 7.9211 6.6072 0.1079 43 1 9.6409 6.3682 0.5506 44 1 7.4467 4.4425 0.7824 45 1 9.1664 4.2006 1.2241 46 1 12.1464 6.8567 -3.0696 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095981639.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:40 Heat of formation + Delta-G solvation = 17.093496 kcal Electronic energy + Delta-G solvation = -23864.063204 eV Core-core repulsion = 20562.055656 eV Total energy + Delta-G solvation = -3302.007547 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.15635 -38.84541 -36.99068 -34.03338 -33.85237 -32.29413 -29.34237 -29.02820 -28.03156 -27.33140 -24.54770 -23.57944 -22.16865 -21.27573 -20.73097 -20.01487 -19.40856 -18.49859 -17.30557 -16.82553 -15.60855 -15.37034 -14.97421 -14.95422 -14.67451 -14.15182 -13.99079 -13.74797 -13.44892 -12.95727 -12.46907 -12.31293 -12.22119 -12.15702 -11.74804 -11.52641 -11.49084 -11.23106 -11.06071 -11.02715 -10.89647 -10.88131 -10.82140 -10.33582 -10.19741 -10.11539 -10.07582 -9.82209 -9.55466 -9.35118 -9.21050 -8.92238 -8.46107 -6.90078 -5.71785 -3.09601 2.73147 3.38577 3.41846 3.46073 3.47856 3.81777 4.42568 4.49755 4.65535 4.72220 4.87504 4.93653 5.07400 5.15789 5.23512 5.30800 5.39789 5.48633 5.53624 5.57265 5.60577 5.65783 5.80027 5.82339 5.86174 5.88265 5.99027 6.00050 6.02946 6.09137 6.14018 6.23595 6.33539 6.35927 6.55586 6.62479 6.72214 6.83504 6.98940 7.02185 7.29028 7.53922 7.76952 7.90604 8.18093 8.57707 9.11694 9.74119 10.54799 11.37965 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.033978 B = 0.003084 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.874463 B = 9077.228525 C = 9385.471176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.089 4.089 4 C -0.120 4.120 5 H 0.117 0.883 6 C -0.149 4.149 7 C -0.189 4.189 8 H 0.119 0.881 9 C 0.537 3.463 10 O -0.545 6.545 11 N -0.708 5.708 12 C 0.127 3.873 13 H 0.081 0.919 14 C -0.140 4.140 15 C 0.154 3.846 16 H 0.155 0.845 17 C -0.137 4.137 18 C -0.130 4.130 19 C 0.128 3.872 20 H 0.084 0.916 21 N -0.590 5.590 22 C -0.209 4.209 23 H 0.079 0.921 24 C -0.013 4.013 25 N -0.924 5.924 26 Si 0.917 3.083 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.395 0.605 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.044 0.956 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.393 -4.122 7.339 21.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.127 4.127 4 C -0.139 4.139 5 H 0.135 0.865 6 C -0.187 4.187 7 C -0.210 4.210 8 H 0.137 0.863 9 C 0.322 3.678 10 O -0.422 6.422 11 N -0.358 5.358 12 C 0.022 3.978 13 H 0.099 0.901 14 C -0.180 4.180 15 C 0.048 3.952 16 H 0.171 0.829 17 C -0.176 4.176 18 C -0.170 4.170 19 C 0.019 3.981 20 H 0.102 0.898 21 N -0.310 5.310 22 C -0.337 4.337 23 H 0.097 0.903 24 C -0.208 4.208 25 N -0.573 5.573 26 Si 0.748 3.252 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.208 1.208 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.229 0.771 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.725 -4.799 6.815 20.497 hybrid contribution 0.651 0.230 -0.092 0.696 sum -18.075 -4.570 6.723 19.818 Atomic orbital electron populations 1.21782 0.95971 1.01573 1.01711 1.21505 0.95531 0.96605 1.02393 1.21236 0.92119 0.97259 1.02051 1.22427 0.94431 0.95759 1.01259 0.86474 1.23078 1.03076 1.02237 0.90264 1.22331 0.98127 0.98470 1.02053 0.86293 1.19595 0.84440 0.83655 0.80070 1.90688 1.68856 1.33960 1.48725 1.46170 1.24434 1.10158 1.55035 1.22629 0.81996 0.98443 0.94771 0.90131 1.23281 0.99944 0.93612 1.01171 1.23761 0.89151 0.91423 0.90906 0.82860 1.23053 0.98941 0.95034 1.00607 1.22909 0.98885 0.97052 0.98158 1.23174 0.87842 0.95311 0.91735 0.89790 1.46472 1.12975 1.03953 1.67623 1.19071 0.89523 0.94091 1.31005 0.90327 1.24698 0.98862 0.95510 1.01765 1.69432 1.36085 1.01630 1.50122 0.86021 0.83230 0.77277 0.78685 1.21656 1.21693 1.20770 0.92844 0.92767 0.92799 0.91760 0.91817 0.91747 0.91487 0.88260 0.88065 0.77077 0.91632 0.92737 0.93695 0.92702 0.93011 0.93172 0.93579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.12 -0.93 5.89 -26.73 -0.16 -1.09 16 3 C -0.09 -0.72 5.50 -26.73 -0.15 -0.87 16 4 C -0.12 -1.26 5.25 -90.62 -0.48 -1.74 16 5 H 0.12 1.47 7.60 -51.93 -0.39 1.08 16 6 C -0.15 -1.47 9.88 -26.73 -0.26 -1.74 16 7 C -0.19 -2.12 5.91 -91.76 -0.54 -2.66 16 8 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 9 C 0.54 8.36 7.61 -10.98 -0.08 8.27 16 10 O -0.54 -10.78 15.99 5.55 0.09 -10.69 16 11 N -0.71 -10.69 3.63 -51.40 -0.19 -10.88 16 12 C 0.13 2.43 3.08 -65.44 -0.20 2.23 16 13 H 0.08 1.74 7.70 -51.93 -0.40 1.34 16 14 C -0.14 -2.69 6.20 -24.24 -0.15 -2.84 16 15 C 0.15 3.49 4.72 -62.80 -0.30 3.20 16 16 H 0.15 3.97 5.52 -51.92 -0.29 3.68 16 17 C -0.14 -2.66 6.44 -24.24 -0.16 -2.81 16 18 C -0.13 -2.44 6.33 -24.24 -0.15 -2.60 16 19 C 0.13 2.75 5.35 -62.80 -0.34 2.41 16 20 H 0.08 1.89 8.14 -51.93 -0.42 1.46 16 21 N -0.59 -14.87 2.99 -145.81 -0.44 -15.31 16 22 C -0.21 -5.83 10.59 -15.06 -0.16 -5.98 16 23 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 25 N -0.92 -26.34 10.47 55.49 0.58 -25.76 16 26 Si 0.92 22.20 29.55 -169.99 -5.02 17.18 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.46 7.87 -51.93 -0.41 0.05 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.10 0.78 8.03 -51.93 -0.42 0.36 16 39 H 0.40 4.89 8.02 -40.82 -0.33 4.56 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.05 0.87 7.34 -51.93 -0.38 0.49 16 42 H 0.04 0.73 7.82 -51.92 -0.41 0.33 16 43 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.05 0.83 6.48 -51.93 -0.34 0.50 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 362.31 15.07 5.46 5.46 Total: -1.00 -30.77 362.31 -10.34 -41.11 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -7.98 Total: 6.19 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -2.85 Total: -7.30 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -0.04 Total: -51.95 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.77 -10.34 -41.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095981639.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.205 kcal (2) G-P(sol) polarization free energy of solvation -30.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds