Wall clock time and date at job start Tue Mar 31 2020 07:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53011 * 109.46787 * 227.54473 * 3 2 1 5 5 C 1.52995 * 109.46712 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46571 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47044 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47431 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99626 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00066 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00059 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47425 * 180.02562 * 11 10 8 13 13 C 1.53781 * 113.61609 * 175.00005 * 12 11 10 14 14 C 1.53781 * 87.08070 * 139.98229 * 13 12 11 15 15 N 1.46497 * 113.61305 * 219.93536 * 14 13 12 16 16 C 1.36944 * 119.99791 * 203.46713 * 15 14 13 17 17 H 1.07993 * 120.00042 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99770 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00274 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99962 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47017 * 89.99868 * 20 18 16 22 22 H 1.48492 * 109.47131 * 210.00443 * 20 18 16 23 23 H 1.48501 * 109.46802 * 330.00196 * 20 18 16 24 24 C 1.53786 * 87.17350 * 334.52830 * 14 13 12 25 25 H 4.44654 * 5.63227 * 179.97438 * 4 1 2 26 26 H 1.09000 * 109.47315 * 107.54779 * 3 2 1 27 27 H 1.08995 * 109.47041 * 347.54125 * 3 2 1 28 28 H 1.09000 * 109.46944 * 60.00078 * 4 3 2 29 29 H 1.08997 * 109.47103 * 300.00198 * 4 3 2 30 30 H 1.09000 * 109.47204 * 60.00419 * 5 4 3 31 31 H 1.08997 * 109.47646 * 300.00047 * 5 4 3 32 32 H 1.09005 * 109.47148 * 60.00752 * 6 5 4 33 33 H 1.08995 * 109.47298 * 299.99898 * 6 5 4 34 34 H 1.09005 * 109.47358 * 59.99831 * 7 6 5 35 35 H 1.09006 * 109.47182 * 300.00516 * 7 6 5 36 36 H 0.96996 * 120.00586 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.47114 * 60.00231 * 11 10 8 38 38 H 1.09006 * 109.47306 * 300.00712 * 11 10 8 39 39 H 1.08996 * 112.84723 * 43.80825 * 12 11 10 40 40 H 1.08999 * 113.61181 * 25.43284 * 13 12 11 41 41 H 1.08998 * 113.61680 * 254.52836 * 13 12 11 42 42 H 1.09002 * 113.61445 * 89.11830 * 14 13 12 43 43 H 0.96995 * 120.00146 * 23.47603 * 15 14 13 44 44 H 0.96996 * 120.00281 * 179.97438 * 19 18 16 45 45 H 1.08992 * 113.61675 * 140.02412 * 24 14 13 46 46 H 1.09000 * 113.60973 * 270.92699 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9747 1.0644 5 6 4.6855 0.9749 1.0648 6 6 5.1949 1.9493 2.1287 7 6 6.7250 1.9501 2.1288 8 6 7.2268 2.9094 3.1771 9 8 6.4383 3.5309 3.8575 10 7 8.5518 3.0758 3.3591 11 6 9.0397 4.0080 4.3786 12 6 10.5697 4.0088 4.3786 13 6 11.1852 5.0469 5.3318 14 6 12.2321 3.9795 5.6918 15 7 12.5723 3.9482 7.1163 16 6 13.7744 3.4329 7.5220 17 1 14.4718 3.0499 6.7918 18 6 14.0970 3.4037 8.8718 19 7 13.2472 3.8708 9.7619 20 14 15.7371 2.7014 9.4252 21 1 16.7527 3.7842 9.4604 22 1 15.5920 2.1145 10.7815 23 1 16.1705 1.6471 8.4735 24 6 11.1875 2.9269 5.2845 25 1 -1.0501 -0.0001 -0.0004 26 1 3.0092 0.3107 -0.9798 27 1 3.0098 -1.0026 0.2217 28 1 2.7923 0.6647 2.0442 29 1 2.7917 1.9779 0.8427 30 1 5.0491 1.2846 0.0850 31 1 5.0490 -0.0285 1.2867 32 1 4.8314 1.6400 3.1087 33 1 4.8315 2.9526 1.9064 34 1 7.0882 2.2596 1.1488 35 1 7.0888 0.9468 2.3508 36 1 9.1824 2.5785 2.8152 37 1 8.6762 3.6978 5.3582 38 1 8.6761 5.0115 4.1572 39 1 10.9929 4.0332 3.3744 40 1 10.5335 5.3170 6.1627 41 1 11.6037 5.9143 4.8214 42 1 13.1108 3.9949 5.0470 43 1 11.9460 4.2923 7.7722 44 1 13.4725 3.8501 10.7051 45 1 11.6079 2.0840 4.7361 46 1 10.5365 2.6185 6.1026 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100570236.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:35 Heat of formation + Delta-G solvation = 12.162926 kcal Electronic energy + Delta-G solvation = -21578.055804 eV Core-core repulsion = 18275.834451 eV Total energy + Delta-G solvation = -3302.221353 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.87054 -38.48704 -36.84147 -34.70308 -34.18673 -33.27790 -31.56245 -30.27404 -28.32390 -26.69122 -25.09655 -23.99215 -23.12128 -21.41897 -21.02578 -20.35455 -19.02858 -18.40857 -17.14250 -16.89439 -16.47467 -16.06085 -15.55651 -14.92363 -14.79469 -14.60729 -14.25390 -13.93025 -13.83080 -13.47611 -13.35650 -12.97371 -12.52871 -12.39543 -11.91946 -11.83413 -11.75613 -11.50197 -11.39697 -11.36706 -11.23557 -10.87870 -10.84846 -10.53341 -10.51222 -10.46942 -10.25570 -10.14852 -9.82282 -9.79845 -9.47504 -9.00728 -8.87181 -6.96846 -5.78843 -3.07823 2.43977 2.47338 2.62433 3.17576 3.42140 3.47185 3.49100 3.96281 4.49422 4.54289 4.56264 4.57757 4.80499 4.84842 4.96624 5.00251 5.05982 5.17885 5.21314 5.24136 5.39429 5.44499 5.46063 5.46801 5.51242 5.62852 5.68979 5.81902 5.82536 5.85803 5.93988 5.96820 6.08278 6.08789 6.26371 6.31178 6.35956 6.47271 6.58823 6.82304 7.11043 7.25140 7.49045 7.68327 8.21454 8.39704 9.50721 10.09148 10.43303 11.43546 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.035772 B = 0.001743 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.536487 B =16058.288248 C =16298.618380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.186 4.186 3 C -0.015 4.015 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.105 4.105 7 C -0.141 4.141 8 C 0.507 3.493 9 O -0.545 6.545 10 N -0.727 5.727 11 C 0.131 3.869 12 C -0.127 4.127 13 C -0.142 4.142 14 C 0.165 3.835 15 N -0.713 5.713 16 C -0.245 4.245 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.160 4.160 25 H 0.216 0.784 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.400 0.600 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.053 0.947 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.009 -6.054 -22.089 29.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.186 4.186 3 C -0.051 4.051 4 C -0.153 4.153 5 C -0.158 4.158 6 C -0.143 4.143 7 C -0.181 4.181 8 C 0.293 3.707 9 O -0.422 6.422 10 N -0.378 5.378 11 C 0.008 3.992 12 C -0.146 4.146 13 C -0.182 4.182 14 C 0.053 3.947 15 N -0.351 5.351 16 C -0.376 4.376 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.201 4.201 25 H 0.233 0.767 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.234 0.766 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.219 0.781 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.361 -5.664 -21.513 28.844 hybrid contribution 0.786 -0.548 0.320 1.011 sum -17.574 -6.213 -21.192 28.224 Atomic orbital electron populations 1.24940 0.96047 1.01131 1.01079 1.23231 0.94711 1.00335 1.00353 1.18799 0.84591 1.01111 1.00621 1.21550 0.95541 0.99427 0.98782 1.21625 0.94776 0.99964 0.99398 1.21336 0.92888 1.00304 0.99754 1.21693 0.97988 0.99742 0.98672 1.20745 0.82312 0.83105 0.84544 1.90709 1.55323 1.48256 1.47944 1.46106 1.06947 1.45382 1.39405 1.21426 0.93722 0.92639 0.91441 1.22685 0.92555 1.00430 0.98965 1.23425 0.99279 0.97200 0.98266 1.21527 0.93290 0.92333 0.87551 1.42414 1.19454 1.72629 1.00632 1.19305 0.94202 1.32713 0.91382 0.91101 1.24769 0.98412 1.01781 0.95918 1.69661 1.35670 1.51796 1.00878 0.86191 0.83560 0.78580 0.77861 1.21681 1.21758 1.20748 1.23988 1.00559 0.97373 0.98215 0.76723 0.89579 0.89540 0.91387 0.91434 0.91657 0.91579 0.91076 0.91167 0.89025 0.88906 0.76638 0.91308 0.91888 0.89419 0.90106 0.92003 0.90764 0.78067 0.93443 0.92793 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.57 19.25 29.55 0.57 -1.00 16 2 C -0.19 -1.49 13.34 -37.12 -0.50 -1.98 16 3 C -0.01 -0.08 5.70 -29.51 -0.17 -0.25 16 4 C -0.12 -0.71 5.17 -26.73 -0.14 -0.85 16 5 C -0.12 -0.66 5.21 -26.73 -0.14 -0.80 16 6 C -0.10 -0.83 4.50 -26.73 -0.12 -0.95 16 7 C -0.14 -1.05 5.70 -27.88 -0.16 -1.21 16 8 C 0.51 5.98 7.83 -10.99 -0.09 5.90 16 9 O -0.54 -8.85 15.98 5.56 0.09 -8.76 16 10 N -0.73 -7.85 5.56 -60.29 -0.33 -8.19 16 11 C 0.13 1.71 5.51 -4.04 -0.02 1.69 16 12 C -0.13 -1.67 3.76 -89.67 -0.34 -2.01 16 13 C -0.14 -2.25 7.39 -25.92 -0.19 -2.44 16 14 C 0.17 3.17 4.47 -67.12 -0.30 2.87 16 15 N -0.71 -17.78 5.41 -52.64 -0.28 -18.07 16 16 C -0.24 -6.76 9.97 -15.06 -0.15 -6.91 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -28.18 13.06 55.49 0.72 -27.46 16 20 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C -0.16 -2.62 7.45 -25.77 -0.19 -2.81 16 25 H 0.22 0.88 7.80 -54.08 -0.42 0.45 16 26 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 33 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.40 3.22 8.47 -40.82 -0.35 2.87 16 37 H 0.07 1.04 7.85 -51.93 -0.41 0.64 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 1.41 8.11 -51.93 -0.42 0.99 16 43 H 0.39 10.25 7.91 -40.82 -0.32 9.93 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.08 1.43 7.90 -51.93 -0.41 1.02 16 LS Contribution 387.80 15.07 5.84 5.84 Total: -1.00 -33.37 387.80 -9.22 -42.59 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -8.21 Total: 8.04 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -2.03 Total: -11.22 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.10 Total: -53.72 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.37 -9.22 -42.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100570236.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.750 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds