Wall clock time and date at job start Tue Mar 31 2020 06:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46674 * 2 1 4 4 C 1.52999 * 109.47098 * 119.99887 * 2 1 3 5 5 C 1.50700 * 115.55145 * 294.85566 * 4 2 1 6 6 O 1.21277 * 119.99803 * 112.28723 * 5 4 2 7 7 N 1.34773 * 119.99713 * 292.28228 * 5 4 2 8 8 C 1.46502 * 119.99693 * 175.80776 * 7 5 4 9 9 H 1.09001 * 110.55867 * 36.45039 * 8 7 5 10 10 C 1.54857 * 110.62692 * 273.55019 * 8 7 5 11 11 C 1.55844 * 103.44560 * 241.35019 * 10 8 7 12 12 H 1.08993 * 115.56502 * 158.80877 * 11 10 8 13 13 C 1.55851 * 105.06342 * 288.17728 * 11 10 8 14 14 C 1.54851 * 103.44541 * 71.82203 * 13 11 10 15 15 C 1.55846 * 110.76173 * 159.44402 * 8 7 5 16 16 H 1.08995 * 115.56307 * 319.73941 * 15 8 7 17 17 N 1.50238 * 101.05091 * 32.93649 * 11 10 8 18 18 C 1.36942 * 130.84068 * 125.99275 * 17 11 10 19 19 H 1.07994 * 120.00063 * 162.55736 * 18 17 11 20 20 C 1.38806 * 119.99896 * 342.56481 * 18 17 11 21 21 N 1.31628 * 119.99943 * 3.97727 * 20 18 17 22 22 Si 1.86800 * 119.99997 * 183.97798 * 20 18 17 23 23 H 1.48495 * 109.47215 * 94.90854 * 22 20 18 24 24 H 1.48504 * 109.46920 * 214.90698 * 22 20 18 25 25 H 1.48493 * 109.47378 * 334.90467 * 22 20 18 26 26 C 1.52999 * 117.49609 * 80.52493 * 4 2 1 27 27 C 1.53002 * 117.49518 * 149.18352 * 4 2 1 28 28 H 1.09009 * 109.46951 * 181.85349 * 1 2 3 29 29 H 1.08996 * 109.47698 * 301.84831 * 1 2 3 30 30 H 1.08999 * 109.47319 * 61.85072 * 1 2 3 31 31 H 1.09003 * 109.47003 * 240.00213 * 2 1 3 32 32 H 1.08998 * 109.46618 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47157 * 299.99787 * 3 2 1 34 34 H 1.09003 * 109.47231 * 60.00353 * 3 2 1 35 35 H 0.96997 * 120.00189 * 355.81402 * 7 5 4 36 36 H 1.08992 * 110.62437 * 359.84170 * 10 8 7 37 37 H 1.08996 * 110.62679 * 122.86602 * 10 8 7 38 38 H 1.09006 * 110.62211 * 190.31188 * 13 11 10 39 39 H 1.08999 * 110.62231 * 313.17441 * 13 11 10 40 40 H 1.08996 * 110.62572 * 241.50837 * 14 13 11 41 41 H 1.09004 * 110.62547 * 118.48813 * 14 13 11 42 42 H 0.97001 * 119.99945 * 180.02562 * 21 20 18 43 43 H 1.09003 * 117.49914 * 214.99651 * 26 4 2 44 44 H 1.09000 * 117.50423 * 0.02726 * 26 4 2 45 45 H 1.08999 * 117.50174 * 359.97438 * 27 4 2 46 46 H 1.09003 * 117.49420 * 144.97756 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.7178 -0.0545 2.5618 6 8 0.9447 -0.5793 3.3348 7 7 2.2890 1.1250 2.8765 8 6 1.9069 1.8180 4.1093 9 1 1.7201 1.1014 4.9091 10 6 0.6616 2.7073 3.8718 11 6 1.1777 4.1444 4.1838 12 1 0.5966 4.9575 3.7490 13 6 1.3602 4.1821 5.7311 14 6 2.6054 3.2928 5.9686 15 6 3.0058 2.8389 4.5325 16 1 4.0346 2.5023 4.4050 17 7 2.6056 4.0429 3.7279 18 6 3.3218 4.8108 2.8488 19 1 4.4009 4.7687 2.8500 20 6 2.6606 5.6433 1.9564 21 7 1.3500 5.7541 2.0071 22 14 3.6309 6.6064 0.6834 23 1 3.6618 5.8483 -0.5930 24 1 2.9836 7.9243 0.4608 25 1 5.0185 6.8125 1.1705 26 6 2.0648 -2.2508 1.2212 27 6 3.3743 -1.4621 1.1419 28 1 -0.3633 -1.0272 0.0332 29 1 -0.3634 0.5422 0.8729 30 1 -0.3634 0.4848 -0.9061 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6765 1.9563 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 2.9529 1.5150 2.2866 36 1 0.3300 2.6348 2.8360 37 1 -0.1427 2.4318 4.5538 38 1 1.5455 5.2011 6.0711 39 1 0.4861 3.7647 6.2311 40 1 2.3501 2.4318 6.5864 41 1 3.4083 3.8707 6.4265 42 1 0.8880 6.3357 1.3832 43 1 1.8482 -2.7748 2.1521 44 1 1.7182 -2.7432 0.3127 45 1 3.8886 -1.4360 0.1812 46 1 4.0194 -1.4669 2.0206 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111004541.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:43 Heat of formation + Delta-G solvation = 20.763276 kcal Electronic energy + Delta-G solvation = -25536.380911 eV Core-core repulsion = 22234.532497 eV Total energy + Delta-G solvation = -3301.848414 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -40.20991 -38.86975 -36.71836 -33.88769 -33.04699 -32.50690 -29.10429 -28.85654 -27.88305 -26.83126 -24.42542 -23.89314 -22.32244 -21.90070 -20.53829 -19.80920 -19.05473 -18.38832 -16.97923 -16.21301 -15.73809 -15.52318 -14.87041 -14.75509 -14.04465 -13.84422 -13.48809 -13.35889 -13.26633 -12.92312 -12.83873 -12.02057 -11.88329 -11.82619 -11.56315 -11.42609 -11.22806 -11.14333 -11.04245 -10.95104 -10.90718 -10.71518 -10.45501 -10.37823 -10.20186 -10.08863 -10.00042 -9.91477 -9.49582 -9.41422 -9.04668 -8.79157 -8.30870 -6.88156 -5.81338 -3.19704 3.00993 3.33171 3.39581 3.41250 3.60007 3.85388 4.38908 4.60517 4.86162 4.95297 5.09159 5.13936 5.31797 5.40455 5.47981 5.55958 5.61857 5.66387 5.74396 5.83987 5.85491 5.92551 5.94334 6.05277 6.11736 6.12440 6.14248 6.17595 6.18243 6.31437 6.33304 6.43094 6.47623 6.52131 6.62961 6.72088 6.74179 6.84570 6.97748 7.16918 7.36200 7.53307 7.75945 8.09913 8.15052 8.75402 9.03024 9.66813 10.53347 11.30227 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.014079 B = 0.006739 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.252295 B = 4154.148946 C = 5276.328114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.049 4.049 3 C -0.160 4.160 4 C -0.148 4.148 5 C 0.549 3.451 6 O -0.553 6.553 7 N -0.699 5.699 8 C 0.127 3.873 9 H 0.075 0.925 10 C -0.136 4.136 11 C 0.160 3.840 12 H 0.140 0.860 13 C -0.142 4.142 14 C -0.126 4.126 15 C 0.124 3.876 16 H 0.087 0.913 17 N -0.588 5.588 18 C -0.220 4.220 19 H 0.074 0.926 20 C 0.000 4.000 21 N -0.910 5.910 22 Si 0.906 3.094 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.281 1.281 26 C -0.148 4.148 27 C -0.163 4.163 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.405 0.595 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.254 0.746 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.723 -10.736 -1.314 10.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.067 4.067 3 C -0.217 4.217 4 C -0.151 4.151 5 C 0.335 3.665 6 O -0.431 6.431 7 N -0.349 5.349 8 C 0.021 3.979 9 H 0.093 0.907 10 C -0.176 4.176 11 C 0.053 3.947 12 H 0.157 0.843 13 C -0.181 4.181 14 C -0.166 4.166 15 C 0.016 3.984 16 H 0.105 0.895 17 N -0.309 5.309 18 C -0.348 4.348 19 H 0.092 0.908 20 C -0.197 4.197 21 N -0.556 5.556 22 Si 0.737 3.263 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.185 4.185 27 C -0.200 4.200 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.241 0.759 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.199 -10.832 -1.000 10.944 hybrid contribution 0.773 0.714 -0.989 1.445 sum 1.972 -10.118 -1.989 10.498 Atomic orbital electron populations 1.21782 0.94680 1.01608 1.02076 1.20598 0.96025 0.96398 0.93701 1.22055 1.01010 0.94745 1.03913 1.21584 1.03162 0.95020 0.95338 1.19360 0.80303 0.80873 0.85981 1.90635 1.36360 1.64966 1.51163 1.46152 1.43029 1.20798 1.24923 1.22601 0.97074 0.92896 0.85361 0.90723 1.23381 0.95489 0.97944 1.00831 1.23402 0.87045 0.95435 0.88806 0.84287 1.23084 0.96135 0.98577 1.00341 1.22865 0.98354 0.98506 0.96889 1.23185 0.95200 0.88290 0.91759 0.89529 1.46436 1.08721 1.27724 1.47979 1.18919 0.89667 1.17659 1.08556 0.90813 1.24853 0.95500 1.00856 0.98475 1.69644 1.06325 1.41235 1.38405 0.86193 0.78980 0.79191 0.81982 1.21557 1.21801 1.20698 1.22933 1.00047 0.91848 1.03667 1.23073 0.90249 1.03157 1.03546 0.92790 0.92360 0.92568 0.90874 0.92617 0.92428 0.90208 0.75895 0.91964 0.93160 0.92801 0.93245 0.92973 0.92484 0.93572 0.88151 0.88317 0.88098 0.88576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.03 37.16 0.34 -1.68 16 2 C -0.05 -0.66 2.75 -90.62 -0.25 -0.91 16 3 C -0.16 -2.47 7.97 37.16 0.30 -2.17 16 4 C -0.15 -2.09 1.47 -155.66 -0.23 -2.32 16 5 C 0.55 9.71 6.16 -10.99 -0.07 9.64 16 6 O -0.55 -11.49 16.45 5.56 0.09 -11.39 16 7 N -0.70 -12.48 3.84 -51.39 -0.20 -12.68 16 8 C 0.13 2.42 2.76 -65.43 -0.18 2.24 16 9 H 0.07 1.44 7.30 -51.93 -0.38 1.06 16 10 C -0.14 -2.82 6.22 -24.23 -0.15 -2.97 16 11 C 0.16 3.57 4.62 -62.80 -0.29 3.28 16 12 H 0.14 3.56 5.91 -51.93 -0.31 3.26 16 13 C -0.14 -2.73 6.44 -24.23 -0.16 -2.89 16 14 C -0.13 -2.25 6.44 -24.24 -0.16 -2.41 16 15 C 0.12 2.40 5.05 -62.80 -0.32 2.08 16 16 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 17 N -0.59 -13.57 2.97 -145.82 -0.43 -14.00 16 18 C -0.22 -5.61 10.55 -15.06 -0.16 -5.77 16 19 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 20 C 0.00 0.01 5.50 -17.43 -0.10 -0.08 16 21 N -0.91 -24.79 10.72 55.49 0.59 -24.20 16 22 Si 0.91 20.88 29.56 -169.99 -5.02 15.86 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 C -0.15 -1.79 9.78 -26.69 -0.26 -2.05 16 27 C -0.16 -1.88 9.93 -26.69 -0.26 -2.15 16 28 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.06 0.96 7.77 -51.93 -0.40 0.56 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 32 H 0.05 0.81 8.08 -51.93 -0.42 0.39 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.49 5.99 -51.93 -0.31 1.18 16 35 H 0.40 7.18 6.89 -40.82 -0.28 6.90 16 36 H 0.06 1.42 7.98 -51.93 -0.41 1.01 16 37 H 0.05 0.99 7.82 -51.93 -0.41 0.58 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.86 7.82 -51.93 -0.41 0.45 16 40 H 0.05 0.83 7.82 -51.93 -0.41 0.42 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 43 H 0.10 1.31 8.04 -51.93 -0.42 0.89 16 44 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 358.46 15.07 5.40 5.40 Total: -1.00 -28.20 358.46 -9.43 -37.63 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -7.92 Total: 11.55 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.95 Total: -8.16 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: -0.04 Total: -50.88 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.20 -9.43 -37.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111004541.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.393 kcal (2) G-P(sol) polarization free energy of solvation -28.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds