Wall clock time and date at job start Tue Mar 31 2020 07:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 120.00055 * 2 1 4 4 C 1.53002 * 109.47331 * 125.00130 * 3 2 1 5 5 C 1.52994 * 109.46903 * 59.99810 * 4 3 2 6 6 C 1.53000 * 109.46797 * 300.00048 * 4 3 2 7 7 C 1.50695 * 109.47004 * 180.02562 * 4 3 2 8 8 O 1.21274 * 120.00413 * 0.27039 * 7 4 3 9 9 N 1.34784 * 119.99635 * 179.97438 * 7 4 3 10 10 C 1.46499 * 119.99971 * 179.97438 * 9 7 4 11 11 H 1.09000 * 110.55793 * 32.09941 * 10 9 7 12 12 C 1.54854 * 110.62936 * 269.02753 * 10 9 7 13 13 C 1.55844 * 103.44477 * 241.51095 * 12 10 9 14 14 H 1.09001 * 115.55924 * 158.81228 * 13 12 10 15 15 C 1.55842 * 105.06182 * 288.16975 * 13 12 10 16 16 C 1.56694 * 103.60012 * 71.59620 * 15 13 12 17 17 C 1.55842 * 110.62826 * 155.00020 * 10 9 7 18 18 H 1.09000 * 115.55627 * 319.67686 * 17 10 9 19 19 N 1.50229 * 101.04999 * 85.55181 * 17 10 9 20 20 C 1.36937 * 130.83859 * 233.98747 * 19 17 10 21 21 H 1.07999 * 120.00054 * 359.97438 * 20 19 17 22 22 C 1.38810 * 119.99935 * 180.02562 * 20 19 17 23 23 N 1.31620 * 120.00549 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99889 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47183 * 60.00144 * 24 22 20 26 26 H 1.48502 * 109.46755 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47193 * 300.00064 * 24 22 20 28 28 H 1.08007 * 119.99890 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.00283 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.00205 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47392 * 4.99688 * 3 2 1 32 32 H 1.09002 * 109.47260 * 244.99933 * 3 2 1 33 33 H 1.09008 * 109.47290 * 179.97438 * 5 4 3 34 34 H 1.09005 * 109.47504 * 300.00164 * 5 4 3 35 35 H 1.08997 * 109.47563 * 60.00289 * 5 4 3 36 36 H 1.09005 * 109.47057 * 299.99722 * 6 4 3 37 37 H 1.08996 * 109.47024 * 59.99865 * 6 4 3 38 38 H 1.08998 * 109.47094 * 179.97438 * 6 4 3 39 39 H 0.96999 * 120.00044 * 0.02562 * 9 7 4 40 40 H 1.09004 * 110.62225 * 359.97438 * 12 10 9 41 41 H 1.08996 * 110.62769 * 123.01470 * 12 10 9 42 42 H 1.08994 * 110.62571 * 190.30986 * 15 13 12 43 43 H 1.08999 * 110.62904 * 313.34139 * 15 13 12 44 44 H 1.08999 * 111.44068 * 241.94227 * 16 15 13 45 45 H 1.08993 * 110.61814 * 118.34916 * 16 15 13 46 46 H 0.97001 * 120.00446 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 4.0244 0.1729 1.0558 6 6 2.2521 1.1962 2.4889 7 6 3.7880 2.6384 1.1819 8 8 3.5657 3.4670 0.3247 9 7 4.7044 2.8876 2.1384 10 6 5.4369 4.1563 2.1385 11 1 4.8142 4.9577 1.7408 12 6 6.7502 4.0281 1.3281 13 6 7.8580 4.3172 2.3854 14 1 8.8510 3.9395 2.1414 15 6 7.7563 5.8458 2.6709 16 6 6.4249 5.9806 3.4859 17 6 5.9301 4.5055 3.5749 18 1 5.2249 4.2936 4.3787 19 7 7.2276 3.7499 3.6255 20 6 7.6924 2.8278 4.5248 21 1 7.0826 2.5418 5.3690 22 6 8.9479 2.2614 4.3520 23 7 9.6918 2.6110 3.3240 24 14 9.5817 1.0030 5.5784 25 1 8.6632 -0.1635 5.6102 26 1 10.9373 0.5540 5.1710 27 1 9.6482 1.6175 6.9286 28 1 -0.5400 0.9354 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 4.7170 0.1931 1.8974 34 1 3.4794 -0.7711 1.0559 35 1 4.5822 0.2704 0.1245 36 1 1.5471 2.0228 2.5785 37 1 1.7071 0.2523 2.4889 38 1 2.9442 1.2157 3.3307 39 1 4.8794 2.2265 2.8263 40 1 6.8567 3.0203 0.9265 41 1 6.7811 4.7671 0.5275 42 1 8.6071 6.1833 3.2627 43 1 7.6887 6.4069 1.7388 44 1 5.6969 6.5987 2.9604 45 1 6.6225 6.3800 4.4806 46 1 10.5689 2.2149 3.2030 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111072113.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:00 Heat of formation + Delta-G solvation = 11.519529 kcal Electronic energy + Delta-G solvation = -24798.830338 eV Core-core repulsion = 21496.581085 eV Total energy + Delta-G solvation = -3302.249253 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.13054 -38.74517 -36.37693 -33.86294 -32.79907 -32.33764 -29.09057 -28.78289 -27.71266 -27.34837 -26.58642 -24.25627 -23.18160 -21.05211 -19.81955 -19.73975 -18.85071 -18.43059 -17.00981 -16.45626 -15.99775 -15.23055 -14.84223 -14.77368 -14.36520 -13.98361 -13.75468 -13.50136 -13.28145 -13.04616 -12.61698 -12.23749 -12.10438 -12.00984 -11.81578 -11.67630 -11.22772 -11.12533 -11.08089 -10.99331 -10.95196 -10.90539 -10.80325 -10.49870 -10.33127 -10.13421 -9.90163 -9.55628 -9.40136 -9.22314 -9.05669 -8.96192 -8.39066 -6.95941 -5.75935 -3.15085 2.18764 3.04580 3.34660 3.39541 3.41013 3.66534 4.39180 4.73897 4.76524 4.90198 5.08466 5.13277 5.15137 5.32367 5.37629 5.60280 5.65243 5.68685 5.70125 5.74729 5.81184 5.85176 5.86980 5.95884 6.05612 6.06455 6.13355 6.17043 6.22032 6.27973 6.31811 6.43555 6.50469 6.54892 6.60400 6.70183 6.75706 6.82786 6.95716 7.16002 7.33350 7.45395 7.78142 8.07056 8.16204 8.69344 9.05660 9.68982 10.50619 11.32932 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.016665 B = 0.004885 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.743078 B = 5730.243752 C = 6777.151597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 C -0.070 4.070 4 C -0.077 4.077 5 C -0.142 4.142 6 C -0.138 4.138 7 C 0.519 3.481 8 O -0.555 6.555 9 N -0.703 5.703 10 C 0.128 3.872 11 H 0.078 0.922 12 C -0.143 4.143 13 C 0.154 3.846 14 H 0.153 0.847 15 C -0.137 4.137 16 C -0.130 4.130 17 C 0.125 3.875 18 H 0.085 0.915 19 N -0.590 5.590 20 C -0.215 4.215 21 H 0.077 0.923 22 C -0.009 4.009 23 N -0.919 5.919 24 Si 0.914 3.086 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.286 1.286 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.402 0.598 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.047 0.953 44 H 0.053 0.947 45 H 0.056 0.944 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.912 -2.513 -3.457 13.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.162 4.162 3 C -0.107 4.107 4 C -0.080 4.080 5 C -0.200 4.200 6 C -0.196 4.196 7 C 0.304 3.696 8 O -0.434 6.434 9 N -0.351 5.351 10 C 0.021 3.979 11 H 0.096 0.904 12 C -0.183 4.183 13 C 0.047 3.953 14 H 0.170 0.830 15 C -0.176 4.176 16 C -0.170 4.170 17 C 0.017 3.983 18 H 0.103 0.897 19 N -0.311 5.311 20 C -0.343 4.343 21 H 0.095 0.905 22 C -0.205 4.205 23 N -0.567 5.567 24 Si 0.745 3.255 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.213 1.213 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.127 0.873 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.237 0.763 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.807 -2.134 -3.921 13.562 hybrid contribution 0.427 -0.949 0.966 1.420 sum -12.380 -3.083 -2.955 13.096 Atomic orbital electron populations 1.23814 0.95941 1.01600 1.02438 1.23007 0.95931 0.98554 0.98665 1.20580 0.97427 0.95140 0.97578 1.20732 0.95989 0.93925 0.97403 1.21905 0.98339 0.96707 1.03037 1.21856 1.00034 1.02473 0.95210 1.20424 0.79699 0.88122 0.81337 1.90638 1.66900 1.48081 1.37758 1.46015 1.39117 1.20286 1.29724 1.22623 0.92137 0.84624 0.98481 0.90373 1.23452 0.96231 1.00610 0.98005 1.23759 0.98427 0.88668 0.84448 0.83011 1.23360 0.96314 1.00012 0.97938 1.23198 0.97458 0.96732 0.99617 1.23133 0.89961 0.91895 0.93344 0.89680 1.46505 1.12896 1.45423 1.26277 1.18946 0.99180 1.13662 1.02503 0.90508 1.24688 0.96794 1.00606 0.98385 1.69449 1.11463 1.46083 1.29704 0.86158 0.77982 0.80992 0.80363 1.21295 1.21611 1.21301 0.88704 0.88752 0.87277 0.90899 0.90326 0.91569 0.91566 0.92084 0.92333 0.91485 0.91966 0.76308 0.92289 0.92943 0.92630 0.93399 0.92843 0.92484 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.83 14.32 29.02 0.42 -1.41 16 2 C -0.14 -1.44 7.65 -36.02 -0.28 -1.71 16 3 C -0.07 -0.85 4.02 -27.88 -0.11 -0.97 16 4 C -0.08 -1.00 0.64 -155.66 -0.10 -1.10 16 5 C -0.14 -1.73 8.11 37.15 0.30 -1.43 16 6 C -0.14 -1.55 8.12 37.16 0.30 -1.24 16 7 C 0.52 8.67 6.48 -10.98 -0.07 8.60 16 8 O -0.56 -11.04 15.63 5.56 0.09 -10.95 16 9 N -0.70 -12.07 4.86 -51.40 -0.25 -12.32 16 10 C 0.13 2.40 2.80 -65.44 -0.18 2.22 16 11 H 0.08 1.49 7.21 -51.93 -0.37 1.12 16 12 C -0.14 -2.92 6.23 -24.24 -0.15 -3.08 16 13 C 0.15 3.48 4.72 -62.80 -0.30 3.18 16 14 H 0.15 3.95 5.52 -51.93 -0.29 3.66 16 15 C -0.14 -2.71 6.49 -23.22 -0.15 -2.86 16 16 C -0.13 -2.36 6.58 -23.22 -0.15 -2.52 16 17 C 0.13 2.43 5.01 -62.81 -0.31 2.12 16 18 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 19 N -0.59 -13.81 2.99 -145.83 -0.44 -14.25 16 20 C -0.22 -5.53 10.59 -15.06 -0.16 -5.69 16 21 H 0.08 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 23 N -0.92 -25.45 10.47 55.49 0.58 -24.87 16 24 Si 0.91 21.12 29.55 -169.99 -5.02 16.09 16 25 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 28 H 0.09 0.85 7.84 -52.48 -0.41 0.44 16 29 H 0.09 0.73 8.06 -52.49 -0.42 0.30 16 30 H 0.11 0.99 6.81 -52.49 -0.36 0.63 16 31 H 0.07 0.94 7.75 -51.93 -0.40 0.54 16 32 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 33 H 0.07 0.86 7.57 -51.92 -0.39 0.47 16 34 H 0.07 0.66 6.53 -51.93 -0.34 0.32 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.65 7.22 -51.93 -0.37 0.28 16 38 H 0.06 0.69 7.56 -51.93 -0.39 0.30 16 39 H 0.40 6.76 7.49 -40.82 -0.31 6.45 16 40 H 0.06 1.30 7.98 -51.93 -0.41 0.89 16 41 H 0.05 1.01 7.82 -51.93 -0.41 0.61 16 42 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.05 0.85 7.82 -51.93 -0.41 0.45 16 44 H 0.05 0.86 7.81 -51.93 -0.41 0.46 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 357.98 15.07 5.39 5.39 Total: -1.00 -28.70 357.98 -8.46 -37.17 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -7.77 Total: 9.97 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -1.04 Total: -6.23 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: -0.11 Total: -51.44 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.70 -8.46 -37.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111072113.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.687 kcal (2) G-P(sol) polarization free energy of solvation -28.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds