Wall clock time and date at job start Tue Mar 31 2020 07:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 120.00055 * 2 1 4 4 C 1.53002 * 109.47331 * 125.00130 * 3 2 1 5 5 C 1.52994 * 109.46903 * 59.99810 * 4 3 2 6 6 C 1.53000 * 109.46797 * 300.00048 * 4 3 2 7 7 C 1.50695 * 109.47004 * 180.02562 * 4 3 2 8 8 O 1.21274 * 120.00413 * 0.27039 * 7 4 3 9 9 N 1.34784 * 119.99635 * 179.97438 * 7 4 3 10 10 C 1.46499 * 119.99971 * 179.97438 * 9 7 4 11 11 H 1.09000 * 110.55793 * 32.09941 * 10 9 7 12 12 C 1.54854 * 110.62936 * 269.02753 * 10 9 7 13 13 C 1.55844 * 103.44477 * 241.51095 * 12 10 9 14 14 H 1.09001 * 115.55924 * 158.81228 * 13 12 10 15 15 C 1.55842 * 105.06182 * 288.16975 * 13 12 10 16 16 C 1.56694 * 103.60012 * 71.59620 * 15 13 12 17 17 C 1.55842 * 110.62826 * 155.00020 * 10 9 7 18 18 H 1.09000 * 115.55627 * 319.67686 * 17 10 9 19 19 N 1.50229 * 101.04999 * 85.55181 * 17 10 9 20 20 C 1.36937 * 130.83859 * 233.98747 * 19 17 10 21 21 H 1.07999 * 120.00054 * 359.97438 * 20 19 17 22 22 C 1.38810 * 119.99935 * 180.02562 * 20 19 17 23 23 N 1.31620 * 120.00549 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99889 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47183 * 60.00144 * 24 22 20 26 26 H 1.48502 * 109.46755 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47193 * 300.00064 * 24 22 20 28 28 H 1.08007 * 119.99890 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.00283 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.00205 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47392 * 4.99688 * 3 2 1 32 32 H 1.09002 * 109.47260 * 244.99933 * 3 2 1 33 33 H 1.09008 * 109.47290 * 179.97438 * 5 4 3 34 34 H 1.09005 * 109.47504 * 300.00164 * 5 4 3 35 35 H 1.08997 * 109.47563 * 60.00289 * 5 4 3 36 36 H 1.09005 * 109.47057 * 299.99722 * 6 4 3 37 37 H 1.08996 * 109.47024 * 59.99865 * 6 4 3 38 38 H 1.08998 * 109.47094 * 179.97438 * 6 4 3 39 39 H 0.96999 * 120.00044 * 0.02562 * 9 7 4 40 40 H 1.09004 * 110.62225 * 359.97438 * 12 10 9 41 41 H 1.08996 * 110.62769 * 123.01470 * 12 10 9 42 42 H 1.08994 * 110.62571 * 190.30986 * 15 13 12 43 43 H 1.08999 * 110.62904 * 313.34139 * 15 13 12 44 44 H 1.08999 * 111.44068 * 241.94227 * 16 15 13 45 45 H 1.08993 * 110.61814 * 118.34916 * 16 15 13 46 46 H 0.97001 * 120.00446 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 4.0244 0.1729 1.0558 6 6 2.2521 1.1962 2.4889 7 6 3.7880 2.6384 1.1819 8 8 3.5657 3.4670 0.3247 9 7 4.7044 2.8876 2.1384 10 6 5.4369 4.1563 2.1385 11 1 4.8142 4.9577 1.7408 12 6 6.7502 4.0281 1.3281 13 6 7.8580 4.3172 2.3854 14 1 8.8510 3.9395 2.1414 15 6 7.7563 5.8458 2.6709 16 6 6.4249 5.9806 3.4859 17 6 5.9301 4.5055 3.5749 18 1 5.2249 4.2936 4.3787 19 7 7.2276 3.7499 3.6255 20 6 7.6924 2.8278 4.5248 21 1 7.0826 2.5418 5.3690 22 6 8.9479 2.2614 4.3520 23 7 9.6918 2.6110 3.3240 24 14 9.5817 1.0030 5.5784 25 1 8.6632 -0.1635 5.6102 26 1 10.9373 0.5540 5.1710 27 1 9.6482 1.6175 6.9286 28 1 -0.5400 0.9354 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 4.7170 0.1931 1.8974 34 1 3.4794 -0.7711 1.0559 35 1 4.5822 0.2704 0.1245 36 1 1.5471 2.0228 2.5785 37 1 1.7071 0.2523 2.4889 38 1 2.9442 1.2157 3.3307 39 1 4.8794 2.2265 2.8263 40 1 6.8567 3.0203 0.9265 41 1 6.7811 4.7671 0.5275 42 1 8.6071 6.1833 3.2627 43 1 7.6887 6.4069 1.7388 44 1 5.6969 6.5987 2.9604 45 1 6.6225 6.3800 4.4806 46 1 10.5689 2.2149 3.2030 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111072113.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:59 Heat of formation + Delta-G solvation = -3.900361 kcal Electronic energy + Delta-G solvation = -24799.498994 eV Core-core repulsion = 21496.581085 eV Total energy + Delta-G solvation = -3302.917909 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.52093 -40.25088 -37.49707 -35.33716 -34.43945 -33.49612 -30.93746 -30.37422 -29.27341 -28.28463 -27.53130 -26.12729 -24.45213 -22.45143 -21.50654 -20.88608 -20.34119 -19.64430 -18.83484 -17.68665 -17.38407 -16.75414 -16.21112 -15.98180 -15.88048 -15.54027 -15.03870 -14.80990 -14.52511 -14.29578 -13.73183 -13.70761 -13.55093 -13.29092 -12.99250 -12.89517 -12.83136 -12.77593 -12.65210 -12.59862 -12.13542 -12.05111 -11.98175 -11.90084 -11.80503 -11.80255 -11.65882 -11.16828 -10.94377 -10.88020 -10.49262 -10.14583 -9.89852 -8.85527 -7.73917 -5.13928 1.44329 1.50684 1.52225 1.58129 1.70928 2.35179 2.52008 3.39100 3.46283 3.64725 3.77808 3.90323 4.02851 4.08590 4.23339 4.26381 4.30129 4.36076 4.45235 4.49766 4.64100 4.69134 4.72347 4.78572 4.79988 4.83368 4.89862 4.91095 4.96893 5.06631 5.10623 5.14313 5.16725 5.19814 5.29692 5.32495 5.37893 5.52824 5.61841 5.73383 5.79817 5.90549 5.95371 6.28153 6.68887 7.07319 7.32685 7.74353 8.60380 9.33233 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.016665 B = 0.004885 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.743078 B = 5730.243752 C = 6777.151597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.154 4.154 3 C -0.065 4.065 4 C -0.071 4.071 5 C -0.139 4.139 6 C -0.133 4.133 7 C 0.515 3.485 8 O -0.589 6.589 9 N -0.702 5.702 10 C 0.138 3.862 11 H 0.083 0.917 12 C -0.133 4.133 13 C 0.140 3.860 14 H 0.116 0.884 15 C -0.131 4.131 16 C -0.121 4.121 17 C 0.127 3.873 18 H 0.100 0.900 19 N -0.609 5.609 20 C -0.215 4.215 21 H 0.085 0.915 22 C -0.065 4.065 23 N -0.948 5.948 24 Si 0.973 3.027 25 H -0.277 1.277 26 H -0.302 1.302 27 H -0.283 1.283 28 H 0.093 0.907 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.405 0.595 40 H 0.033 0.967 41 H 0.062 0.938 42 H 0.039 0.961 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.060 0.940 46 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.243 -3.133 -2.673 15.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.172 4.172 3 C -0.103 4.103 4 C -0.074 4.074 5 C -0.196 4.196 6 C -0.191 4.191 7 C 0.303 3.697 8 O -0.469 6.469 9 N -0.350 5.350 10 C 0.031 3.969 11 H 0.101 0.899 12 C -0.173 4.173 13 C 0.034 3.966 14 H 0.134 0.866 15 C -0.170 4.170 16 C -0.160 4.160 17 C 0.020 3.980 18 H 0.118 0.882 19 N -0.330 5.330 20 C -0.344 4.344 21 H 0.103 0.897 22 C -0.258 4.258 23 N -0.598 5.598 24 Si 0.803 3.197 25 H -0.203 1.203 26 H -0.228 1.228 27 H -0.209 1.209 28 H 0.112 0.888 29 H 0.132 0.868 30 H 0.140 0.860 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.240 0.760 40 H 0.052 0.948 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.079 0.921 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -15.176 -2.749 -3.124 15.736 hybrid contribution 1.098 -0.715 0.668 1.471 sum -14.078 -3.464 -2.455 14.705 Atomic orbital electron populations 1.24002 0.95650 1.02519 1.00386 1.22913 0.96200 0.97657 1.00449 1.20496 0.97006 0.96375 0.96380 1.20744 0.96000 0.91725 0.98921 1.21897 0.98154 0.97706 1.01879 1.21839 0.99845 1.03528 0.93846 1.21154 0.79216 0.89102 0.80250 1.90616 1.67887 1.49570 1.38876 1.45997 1.39081 1.19857 1.30065 1.22425 0.91279 0.85572 0.97617 0.89926 1.23311 0.96740 0.99373 0.97892 1.23586 0.97387 0.90563 0.85101 0.86646 1.23255 0.96862 0.97891 0.99019 1.23160 0.96826 0.96154 0.99899 1.23323 0.88613 0.92129 0.93954 0.88194 1.46680 1.14552 1.45629 1.26132 1.19308 0.99060 1.13351 1.02660 0.89694 1.25407 0.97451 1.02825 1.00082 1.69709 1.11311 1.47350 1.31387 0.85220 0.76804 0.79247 0.78443 1.20330 1.22826 1.20926 0.88824 0.86799 0.85960 0.91946 0.92131 0.92536 0.88769 0.93406 0.92485 0.89428 0.91921 0.76000 0.94788 0.91912 0.94255 0.91306 0.89982 0.92136 0.94547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.89 14.32 67.79 0.97 -1.92 16 2 C -0.15 -2.71 7.65 25.65 0.20 -2.51 16 3 C -0.06 -1.52 4.02 29.85 0.12 -1.40 16 4 C -0.07 -1.74 0.64 -52.93 -0.03 -1.77 16 5 C -0.14 -3.21 8.11 71.98 0.58 -2.62 16 6 C -0.13 -2.67 8.12 71.98 0.58 -2.09 16 7 C 0.52 16.95 6.48 87.65 0.57 17.52 16 8 O -0.59 -23.32 15.63 -3.01 -0.05 -23.36 16 9 N -0.70 -23.61 4.86 -434.92 -2.11 -25.72 16 10 C 0.14 5.04 2.80 46.61 0.13 5.17 16 11 H 0.08 3.00 7.21 -2.39 -0.02 2.98 16 12 C -0.13 -5.47 6.23 32.21 0.20 -5.27 16 13 C 0.14 6.44 4.72 46.23 0.22 6.66 16 14 H 0.12 6.27 5.52 -2.39 -0.01 6.26 16 15 C -0.13 -5.09 6.49 32.87 0.21 -4.87 16 16 C -0.12 -4.11 6.58 32.87 0.22 -3.89 16 17 C 0.13 4.73 5.01 46.23 0.23 4.96 16 18 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 19 N -0.61 -28.37 2.99 -615.28 -1.84 -30.21 16 20 C -0.22 -11.03 10.59 84.03 0.89 -10.15 16 21 H 0.09 4.11 7.83 -2.91 -0.02 4.09 16 22 C -0.07 -3.49 5.50 84.86 0.47 -3.02 16 23 N -0.95 -54.20 10.47 21.65 0.23 -53.97 16 24 Si 0.97 43.78 29.55 68.60 2.03 45.81 16 25 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 26 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 27 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 28 H 0.09 1.46 7.84 -2.91 -0.02 1.43 16 29 H 0.11 1.33 8.06 -2.91 -0.02 1.31 16 30 H 0.12 1.83 6.81 -2.91 -0.02 1.81 16 31 H 0.06 1.57 7.75 -2.39 -0.02 1.55 16 32 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 33 H 0.06 1.41 7.57 -2.38 -0.02 1.39 16 34 H 0.09 1.64 6.53 -2.38 -0.02 1.62 16 35 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.09 1.42 7.22 -2.39 -0.02 1.40 16 38 H 0.06 1.26 7.56 -2.39 -0.02 1.24 16 39 H 0.40 13.28 7.49 -92.71 -0.69 12.58 16 40 H 0.03 1.54 7.98 -2.38 -0.02 1.52 16 41 H 0.06 2.41 7.82 -2.39 -0.02 2.39 16 42 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.07 2.35 7.82 -2.39 -0.02 2.33 16 44 H 0.08 2.36 7.81 -2.39 -0.02 2.34 16 45 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.24 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -62.66 357.98 4.07 -58.59 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: 0.26 Total: 34.10 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 5.56 Total: -5.23 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -3.73 Total: -109.91 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.05 Total: -23.36 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -62.66 4.07 -58.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111072113.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.690 kcal (2) G-P(sol) polarization free energy of solvation -62.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds