Wall clock time and date at job start Tue Mar 31 2020 07:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50707 * 109.47046 * 2 1 4 4 C 1.32993 * 119.99821 * 183.76907 * 3 2 1 5 5 C 1.50705 * 119.99770 * 184.34069 * 4 3 2 6 6 C 1.47105 * 120.00203 * 4.34767 * 4 3 2 7 7 O 1.21614 * 119.99934 * 353.93936 * 6 4 3 8 8 N 1.34767 * 119.99832 * 173.94308 * 6 4 3 9 9 C 1.46505 * 119.99774 * 179.97438 * 8 6 4 10 10 C 1.54323 * 111.68822 * 298.98289 * 9 8 6 11 11 C 1.55058 * 104.06419 * 262.85187 * 10 9 8 12 12 C 1.55054 * 102.11264 * 319.88116 * 11 10 9 13 13 C 1.54320 * 103.93714 * 40.05443 * 12 11 10 14 14 H 1.09002 * 111.69452 * 98.06919 * 13 12 11 15 15 C 1.53777 * 109.06304 * 222.02925 * 13 12 11 16 16 N 1.47217 * 106.37715 * 94.88299 * 15 13 12 17 17 C 1.36936 * 126.70098 * 211.25750 * 16 15 13 18 18 H 1.07997 * 120.00255 * 180.02562 * 17 16 15 19 19 C 1.38813 * 120.00100 * 0.02562 * 17 16 15 20 20 N 1.31617 * 120.00125 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00066 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46929 * 90.00212 * 21 19 17 23 23 H 1.48500 * 109.47083 * 209.99929 * 21 19 17 24 24 H 1.48493 * 109.47111 * 330.00112 * 21 19 17 25 25 C 1.47207 * 106.59550 * 31.28902 * 16 15 13 26 26 H 1.09000 * 109.46984 * 300.00334 * 1 2 3 27 27 H 1.09003 * 109.47093 * 60.00270 * 1 2 3 28 28 H 1.09002 * 109.46929 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47348 * 239.99335 * 2 1 3 30 30 H 1.09001 * 109.47063 * 119.99188 * 2 1 3 31 31 H 1.07996 * 120.00020 * 3.76701 * 3 2 1 32 32 H 1.09001 * 109.47416 * 270.00199 * 5 4 3 33 33 H 1.09002 * 109.46578 * 30.00780 * 5 4 3 34 34 H 1.09001 * 109.46752 * 150.00264 * 5 4 3 35 35 H 0.96995 * 120.00488 * 359.97438 * 8 6 4 36 36 H 1.09009 * 110.53331 * 144.17395 * 10 9 8 37 37 H 1.08996 * 110.54013 * 21.53878 * 10 9 8 38 38 H 1.09001 * 110.90184 * 78.08689 * 11 10 9 39 39 H 1.09001 * 110.90487 * 201.64484 * 11 10 9 40 40 H 1.09004 * 110.53388 * 158.66869 * 12 11 10 41 41 H 1.09001 * 110.53829 * 281.44461 * 12 11 10 42 42 H 1.08997 * 110.07868 * 214.10534 * 15 13 12 43 43 H 1.08996 * 110.07321 * 335.65348 * 15 13 12 44 44 H 0.97000 * 120.00555 * 180.02562 * 20 19 17 45 45 H 1.08996 * 110.07654 * 87.94983 * 25 16 15 46 46 H 1.09005 * 110.07301 * 209.43154 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 3.3375 1.6647 -0.0757 5 6 3.8466 3.0797 0.0227 6 6 4.2842 0.5532 -0.2557 7 8 3.8862 -0.5955 -0.2249 8 7 5.5925 0.8081 -0.4547 9 6 6.5355 -0.2989 -0.6334 10 6 6.5768 -1.2185 0.6053 11 6 7.8053 -0.7159 1.4069 12 6 8.8334 -0.4306 0.2818 13 6 7.9884 0.2076 -0.8408 14 1 8.0559 1.2954 -0.8271 15 6 8.4309 -0.3728 -2.1943 16 7 7.5180 -1.4905 -2.4852 17 6 7.8156 -2.6295 -3.1847 18 1 7.0579 -3.3842 -3.3352 19 6 9.0911 -2.8140 -3.7003 20 7 10.0146 -1.8944 -3.5165 21 14 9.4968 -4.3674 -4.6552 22 1 9.2148 -4.1501 -6.0969 23 1 10.9336 -4.6974 -4.4761 24 1 8.6647 -5.4895 -4.1517 25 6 6.2225 -1.1442 -1.8778 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.3324 2.2411 0.0614 32 1 3.8917 3.5198 -0.9735 33 1 3.1733 3.6653 0.6486 34 1 4.8432 3.0774 0.4643 35 1 5.9100 1.7243 -0.4796 36 1 6.7148 -2.2575 0.3057 37 1 5.6657 -1.1090 1.1934 38 1 7.5657 0.1953 1.9550 39 1 8.1717 -1.4889 2.0823 40 1 9.5966 0.2659 0.6289 41 1 9.2896 -1.3584 -0.0636 42 1 8.3510 0.3873 -2.9715 43 1 9.4568 -0.7350 -2.1286 44 1 10.9059 -2.0232 -3.8771 45 1 5.6226 -0.5658 -2.5803 46 1 5.6902 -2.0507 -1.5896 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111632043.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:26 Heat of formation + Delta-G solvation = -5.294031 kcal Electronic energy + Delta-G solvation = -24811.547148 eV Core-core repulsion = 21508.568804 eV Total energy + Delta-G solvation = -3302.978343 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.25795 -38.44571 -35.33026 -34.38347 -33.63514 -32.06688 -31.31745 -29.35207 -27.70150 -26.98596 -24.58664 -24.58056 -23.06814 -21.79104 -20.54573 -20.34632 -18.75708 -18.45234 -17.02650 -16.01378 -15.68933 -15.09769 -14.79088 -14.47076 -14.13138 -13.84532 -13.77082 -13.45414 -13.41449 -13.19363 -13.00450 -12.73288 -12.52565 -12.48670 -11.82523 -11.62081 -11.32485 -11.17555 -11.09810 -10.97727 -10.88447 -10.59557 -10.50252 -10.24920 -10.15821 -10.00833 -9.88841 -9.86225 -9.62881 -9.15252 -9.02718 -8.68031 -8.47016 -6.82239 -5.61572 -3.05661 1.48668 3.41586 3.44859 3.47825 3.49493 3.59256 4.51257 4.68439 4.81747 4.98280 5.12026 5.20684 5.26241 5.30597 5.38887 5.42055 5.48300 5.52907 5.65348 5.69889 5.78497 5.89359 5.93325 5.99308 6.06540 6.15219 6.17047 6.18550 6.20610 6.31134 6.40062 6.42071 6.48087 6.60675 6.64894 6.68932 6.85301 6.90395 7.00683 7.22105 7.45820 7.65696 7.84678 7.93449 8.42709 8.60509 9.24472 9.84881 10.52447 11.39773 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.019135 B = 0.004500 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.952467 B = 6220.067771 C = 6932.545320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.095 4.095 3 C -0.073 4.073 4 C -0.194 4.194 5 C -0.114 4.114 6 C 0.546 3.454 7 O -0.532 6.532 8 N -0.707 5.707 9 C 0.159 3.841 10 C -0.110 4.110 11 C -0.125 4.125 12 C -0.108 4.108 13 C -0.115 4.115 14 H 0.068 0.932 15 C 0.139 3.861 16 N -0.593 5.593 17 C -0.214 4.214 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.923 5.923 21 Si 0.915 3.085 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.142 3.858 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.120 0.880 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.394 0.606 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.080 0.920 42 H 0.002 0.998 43 H 0.129 0.871 44 H 0.252 0.748 45 H 0.012 0.988 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.210 10.083 10.007 18.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.131 4.131 3 C -0.092 4.092 4 C -0.197 4.197 5 C -0.171 4.171 6 C 0.335 3.665 7 O -0.410 6.410 8 N -0.357 5.357 9 C 0.072 3.928 10 C -0.149 4.149 11 C -0.162 4.162 12 C -0.146 4.146 13 C -0.135 4.135 14 H 0.086 0.914 15 C 0.013 3.987 16 N -0.317 5.317 17 C -0.342 4.342 18 H 0.096 0.904 19 C -0.207 4.207 20 N -0.572 5.572 21 Si 0.746 3.254 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.015 3.985 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.138 0.862 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.229 0.771 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.020 0.980 43 H 0.147 0.853 44 H 0.063 0.937 45 H 0.030 0.970 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.284 9.113 9.889 17.555 hybrid contribution 0.288 -0.023 -0.608 0.673 sum -10.996 9.089 9.281 17.020 Atomic orbital electron populations 1.21909 0.96471 1.01709 1.01194 1.20817 0.94201 0.93549 1.04550 1.23648 0.94449 0.98736 0.92408 1.21563 0.94651 0.95431 1.08030 1.20763 1.01530 0.92508 1.02318 1.18330 0.82293 0.88878 0.77027 1.90774 1.77587 1.22122 1.50555 1.45989 1.07114 1.09632 1.72997 1.21815 0.88094 0.86496 0.96385 1.22629 0.97419 0.99488 0.95341 1.22597 0.96423 0.99828 0.97387 1.22441 0.96632 1.01302 0.94216 1.23093 0.92335 0.98353 0.99732 0.91367 1.22035 0.99821 0.88383 0.88439 1.44447 1.06096 1.18948 1.62172 1.19109 0.95688 0.94360 1.25024 0.90394 1.24744 0.96040 0.98559 1.01387 1.69587 1.03513 1.33664 1.50446 0.86054 0.77335 0.82366 0.79685 1.21704 1.21664 1.20686 1.21463 0.89480 0.96437 0.91142 0.93126 0.92996 0.92597 0.88973 0.89709 0.86202 0.91195 0.91453 0.91622 0.77076 0.90495 0.91817 0.92607 0.92222 0.92637 0.90130 0.97983 0.85338 0.93722 0.97011 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.85 37.16 0.37 -1.10 16 2 C -0.09 -1.15 4.53 -27.88 -0.13 -1.28 16 3 C -0.07 -0.80 9.25 -36.12 -0.33 -1.13 16 4 C -0.19 -2.34 6.00 -102.84 -0.62 -2.95 16 5 C -0.11 -1.01 9.49 36.01 0.34 -0.67 16 6 C 0.55 8.58 7.01 -12.67 -0.09 8.49 16 7 O -0.53 -9.85 11.10 5.27 0.06 -9.79 16 8 N -0.71 -10.94 5.15 -46.71 -0.24 -11.18 16 9 C 0.16 2.96 0.93 -129.59 -0.12 2.84 16 10 C -0.11 -2.00 5.50 -24.95 -0.14 -2.13 16 11 C -0.12 -1.97 6.92 -24.56 -0.17 -2.14 16 12 C -0.11 -1.90 6.23 -24.95 -0.16 -2.06 16 13 C -0.11 -2.16 3.67 -88.33 -0.32 -2.48 16 14 H 0.07 1.12 7.76 -51.93 -0.40 0.72 16 15 C 0.14 3.35 5.56 -3.25 -0.02 3.33 16 16 N -0.59 -15.43 3.39 -171.22 -0.58 -16.01 16 17 C -0.21 -6.03 10.34 -15.06 -0.16 -6.18 16 18 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 19 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 20 N -0.92 -26.54 10.08 55.49 0.56 -25.98 16 21 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.14 3.25 5.32 -3.32 -0.02 3.24 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.09 1.36 6.87 -51.93 -0.36 1.00 16 30 H 0.08 1.14 7.55 -51.93 -0.39 0.75 16 31 H 0.12 1.00 7.99 -52.49 -0.42 0.58 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 34 H 0.06 0.55 6.96 -51.93 -0.36 0.18 16 35 H 0.39 5.08 6.59 -40.82 -0.27 4.81 16 36 H 0.08 1.56 7.56 -51.92 -0.39 1.17 16 37 H 0.06 1.15 6.64 -51.93 -0.34 0.80 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 1.66 7.56 -51.93 -0.39 1.27 16 42 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 43 H 0.13 3.43 4.88 -51.93 -0.25 3.18 16 44 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.01 0.29 8.08 -51.93 -0.42 -0.13 16 46 H 0.05 1.22 7.56 -51.93 -0.39 0.83 16 LS Contribution 352.01 15.07 5.30 5.30 Total: -1.00 -30.60 352.01 -9.32 -39.92 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.74 Total: 5.22 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -1.65 Total: -4.68 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.26 Total: -53.17 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.06 Total: -9.79 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.60 -9.32 -39.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111632043.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.627 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds