Wall clock time and date at job start Tue Mar 31 2020 07:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99897 * 2 1 4 4 C 1.50698 * 120.00237 * 180.02562 * 2 1 3 5 5 C 1.53006 * 109.47172 * 94.99704 * 4 2 1 6 6 C 1.50705 * 109.46914 * 180.02562 * 5 4 2 7 7 O 1.21273 * 119.99875 * 0.02562 * 6 5 4 8 8 N 1.34772 * 119.99546 * 180.02562 * 6 5 4 9 9 C 1.46502 * 119.99808 * 180.02562 * 8 6 5 10 10 C 1.54190 * 112.24671 * 299.45465 * 9 8 6 11 11 C 1.54855 * 104.29575 * 261.20923 * 10 9 8 12 12 C 1.56226 * 103.17729 * 322.23567 * 11 10 9 13 13 C 1.54181 * 103.64861 * 37.34023 * 12 11 10 14 14 H 1.09002 * 111.61425 * 99.67375 * 13 12 11 15 15 C 1.53792 * 109.12500 * 223.52981 * 13 12 11 16 16 N 1.47222 * 106.36089 * 133.48696 * 15 13 12 17 17 C 1.36933 * 126.70701 * 148.78208 * 16 15 13 18 18 H 1.07993 * 120.00623 * 179.97438 * 17 16 15 19 19 C 1.38823 * 119.99542 * 359.97438 * 17 16 15 20 20 N 1.31615 * 119.99956 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99560 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47362 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46727 * 120.00147 * 21 19 17 24 24 H 1.48498 * 109.47008 * 240.00118 * 21 19 17 25 25 C 1.47227 * 106.59521 * 328.76666 * 16 15 13 26 26 H 1.07996 * 120.00513 * 359.97438 * 1 2 3 27 27 H 1.08000 * 119.99485 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47092 * 240.00513 * 3 2 1 29 29 H 1.09003 * 109.47028 * 359.97438 * 3 2 1 30 30 H 1.08996 * 109.47349 * 119.99835 * 3 2 1 31 31 H 1.08999 * 109.47023 * 334.99519 * 4 2 1 32 32 H 1.09001 * 109.46880 * 214.99955 * 4 2 1 33 33 H 1.09006 * 109.46938 * 60.00148 * 5 4 2 34 34 H 1.08995 * 109.46829 * 300.00294 * 5 4 2 35 35 H 0.97001 * 120.00306 * 359.97438 * 8 6 5 36 36 H 1.08996 * 110.46736 * 19.91205 * 10 9 8 37 37 H 1.09000 * 110.46437 * 142.50960 * 10 9 8 38 38 H 1.08999 * 110.75805 * 80.17689 * 11 10 9 39 39 H 1.08996 * 110.75611 * 203.54885 * 11 10 9 40 40 H 1.09001 * 109.69558 * 279.36384 * 12 11 10 41 41 H 1.09002 * 111.85325 * 156.36287 * 12 11 10 42 42 H 1.09010 * 110.07705 * 252.71077 * 15 13 12 43 43 H 1.08999 * 110.08176 * 14.20342 * 15 13 12 44 44 H 0.97002 * 119.99785 * 180.02562 * 20 19 17 45 45 H 1.08992 * 110.07701 * 150.45658 * 25 16 15 46 46 H 1.09004 * 110.07363 * 272.01069 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3050 -0.0006 5 6 2.4274 -1.6833 -1.4378 6 6 3.1804 -2.9887 -1.4384 7 8 3.4036 -3.5604 -0.3924 8 7 3.6058 -3.5207 -2.6013 9 6 4.3373 -4.7900 -2.6020 10 6 5.6479 -4.7089 -1.7937 11 6 6.7445 -4.4883 -2.8645 12 6 6.2658 -5.3812 -4.0538 13 6 4.7323 -5.2217 -4.0341 14 1 4.3938 -4.5023 -4.7797 15 6 4.0799 -6.5994 -4.2381 16 7 3.0212 -6.7115 -3.2213 17 6 1.8428 -7.3990 -3.3390 18 1 1.1394 -7.4093 -2.5196 19 6 1.5524 -8.0828 -4.5117 20 7 2.4099 -8.0706 -5.5101 21 14 -0.0548 -9.0212 -4.6721 22 1 -0.8382 -8.8792 -3.4185 23 1 -0.8370 -8.4725 -5.8089 24 1 0.2329 -10.4574 -4.9165 25 6 3.4770 -5.9405 -2.0529 26 1 -0.5401 0.9352 0.0004 27 1 -0.5399 -0.9354 -0.0004 28 1 2.6901 1.3629 -0.8901 29 1 1.3551 2.1336 -0.0005 30 1 2.6901 1.3629 0.8899 31 1 1.4387 -2.0856 0.4335 32 1 2.9742 -1.1990 0.5889 33 1 3.0523 -0.9027 -1.8718 34 1 1.5167 -1.7892 -2.0272 35 1 3.4269 -3.0635 -3.4380 36 1 5.6170 -3.8679 -1.1010 37 1 5.8222 -5.6408 -1.2559 38 1 6.7819 -3.4425 -3.1695 39 1 7.7157 -4.8195 -2.4968 40 1 6.5435 -6.4189 -3.8691 41 1 6.6722 -5.0406 -5.0061 42 1 3.6479 -6.6646 -5.2369 43 1 4.8192 -7.3880 -4.0984 44 1 2.2067 -8.5481 -6.3297 45 1 2.6200 -5.5411 -1.5106 46 1 4.0739 -6.5737 -1.3964 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111762998.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:30 Heat of formation + Delta-G solvation = -8.011203 kcal Electronic energy + Delta-G solvation = -24375.550859 eV Core-core repulsion = 21072.454691 eV Total energy + Delta-G solvation = -3303.096169 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.18111 -38.26839 -36.38083 -34.47043 -33.30707 -31.51626 -31.13200 -29.38545 -27.74897 -27.39010 -24.95527 -24.69421 -23.87134 -21.22294 -20.25159 -19.28092 -18.79839 -18.44367 -17.15411 -16.36590 -15.74634 -15.56928 -14.90765 -14.70274 -14.54755 -14.21582 -13.90531 -13.63730 -13.45540 -13.25020 -12.73441 -12.49465 -12.39241 -12.12956 -11.84792 -11.62012 -11.39326 -11.21871 -11.13135 -10.95700 -10.91894 -10.78238 -10.70453 -10.56691 -10.24488 -10.19922 -9.91199 -9.73318 -9.50184 -9.38378 -9.08284 -8.72570 -8.50464 -6.83887 -5.62808 -3.07134 2.08574 2.98787 3.39563 3.45673 3.47975 3.55890 4.49066 4.66959 4.78099 4.87686 5.02687 5.05180 5.16309 5.23223 5.28503 5.40046 5.44764 5.49810 5.61548 5.72332 5.75560 5.77369 5.82681 5.86543 5.90575 5.92436 6.04493 6.08115 6.12875 6.19394 6.28845 6.45045 6.49904 6.51944 6.59781 6.71388 6.76060 6.79836 6.87675 7.22961 7.47978 7.63551 7.81769 7.94201 8.40917 8.61523 9.22986 9.83447 10.51459 11.38153 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.013485 B = 0.004717 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.900480 B = 5935.041944 C = 7517.485145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.069 4.069 5 C -0.135 4.135 6 C 0.510 3.490 7 O -0.540 6.540 8 N -0.706 5.706 9 C 0.161 3.839 10 C -0.116 4.116 11 C -0.124 4.124 12 C -0.114 4.114 13 C -0.113 4.113 14 H 0.072 0.928 15 C 0.140 3.860 16 N -0.598 5.598 17 C -0.214 4.214 18 H 0.077 0.923 19 C -0.014 4.014 20 N -0.923 5.923 21 Si 0.914 3.086 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.136 3.864 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.396 0.604 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.122 0.878 43 H 0.011 0.989 44 H 0.251 0.749 45 H 0.047 0.953 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.072 16.262 5.240 17.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.126 4.126 3 C -0.176 4.176 4 C -0.107 4.107 5 C -0.175 4.175 6 C 0.296 3.704 7 O -0.418 6.418 8 N -0.356 5.356 9 C 0.074 3.926 10 C -0.155 4.155 11 C -0.161 4.161 12 C -0.152 4.152 13 C -0.134 4.134 14 H 0.090 0.910 15 C 0.014 3.986 16 N -0.322 5.322 17 C -0.342 4.342 18 H 0.095 0.905 19 C -0.208 4.208 20 N -0.572 5.572 21 Si 0.745 3.255 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.217 1.217 25 C 0.009 3.991 26 H 0.113 0.887 27 H 0.116 0.884 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.230 0.770 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.140 0.860 43 H 0.029 0.971 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 4.075 15.674 5.853 17.220 hybrid contribution -0.951 -0.271 -0.570 1.141 sum 3.124 15.403 5.282 16.580 Atomic orbital electron populations 1.23757 0.95247 1.01861 1.02501 1.21807 0.95475 0.95762 0.99592 1.20880 1.00210 0.94333 1.02176 1.20376 1.00771 0.94039 0.95492 1.21631 1.01280 0.95452 0.99104 1.20551 0.79185 0.86686 0.83951 1.90681 1.56854 1.62755 1.31490 1.46018 1.57175 1.23750 1.08630 1.21686 0.91219 0.83436 0.96233 1.22609 0.93315 1.02371 0.97162 1.22761 0.97980 0.99326 0.96072 1.22683 0.94938 1.00152 0.97412 1.22989 0.95111 1.01356 0.93915 0.90971 1.22067 0.89343 0.88566 0.98626 1.44597 1.18182 1.57849 1.11535 1.19162 0.93280 1.22489 0.99266 0.90483 1.24754 0.98702 1.00987 0.96392 1.69612 1.34962 1.47239 1.05408 0.85989 0.82691 0.79380 0.77445 1.20561 1.21796 1.21736 1.21676 0.96179 0.90620 0.90633 0.88653 0.88353 0.91601 0.92193 0.91610 0.90462 0.90609 0.89319 0.89011 0.76959 0.91361 0.90846 0.92329 0.92113 0.91243 0.91871 0.86042 0.97067 0.93788 0.93472 0.95724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.90 13.90 29.01 0.40 -1.49 16 2 C -0.13 -1.25 5.31 -101.07 -0.54 -1.78 16 3 C -0.12 -0.95 10.12 36.01 0.36 -0.58 16 4 C -0.07 -0.80 4.67 -27.88 -0.13 -0.93 16 5 C -0.13 -1.55 5.68 -27.88 -0.16 -1.71 16 6 C 0.51 7.97 6.84 -10.99 -0.08 7.89 16 7 O -0.54 -10.25 13.56 5.56 0.08 -10.18 16 8 N -0.71 -11.12 5.24 -45.82 -0.24 -11.36 16 9 C 0.16 2.94 0.93 -129.89 -0.12 2.82 16 10 C -0.12 -1.91 5.66 -25.13 -0.14 -2.05 16 11 C -0.12 -1.72 6.92 -24.02 -0.17 -1.89 16 12 C -0.11 -1.77 6.48 -24.38 -0.16 -1.93 16 13 C -0.11 -2.09 3.62 -88.70 -0.32 -2.41 16 14 H 0.07 1.26 7.69 -51.93 -0.40 0.86 16 15 C 0.14 3.34 5.77 -3.24 -0.02 3.32 16 16 N -0.60 -15.58 3.39 -171.09 -0.58 -16.16 16 17 C -0.21 -6.06 10.34 -15.06 -0.16 -6.21 16 18 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 19 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 20 N -0.92 -26.65 10.08 55.49 0.56 -26.09 16 21 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 C 0.14 3.10 6.03 -3.23 -0.02 3.08 16 26 H 0.10 0.78 7.83 -52.49 -0.41 0.37 16 27 H 0.10 0.98 7.99 -52.49 -0.42 0.56 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.42 7.78 -51.93 -0.40 0.01 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 1.02 7.94 -51.93 -0.41 0.60 16 32 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.40 5.34 8.28 -40.82 -0.34 5.00 16 36 H 0.07 1.14 6.69 -51.93 -0.35 0.79 16 37 H 0.07 1.27 7.17 -51.93 -0.37 0.90 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 1.15 7.18 -51.93 -0.37 0.77 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.12 3.27 5.45 -51.92 -0.28 2.99 16 43 H 0.01 0.29 7.13 -51.93 -0.37 -0.08 16 44 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.05 1.14 6.84 -51.93 -0.36 0.78 16 46 H 0.03 0.58 7.12 -51.93 -0.37 0.21 16 LS Contribution 357.26 15.07 5.38 5.38 Total: -1.00 -31.33 357.26 -8.94 -40.27 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -7.78 Total: 5.27 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -1.33 Total: -4.36 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.26 Total: -53.61 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.18 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.33 -8.94 -40.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111762998.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.254 kcal (2) G-P(sol) polarization free energy of solvation -31.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds