Wall clock time and date at job start Tue Mar 31 2020 08:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 120.00180 * 2 1 4 4 C 1.52998 * 109.47126 * 124.99488 * 3 2 1 5 5 C 1.50702 * 109.47126 * 180.02562 * 4 3 2 6 6 O 1.21280 * 119.99997 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00174 * 180.02562 * 5 4 3 8 8 C 1.48119 * 127.84156 * 0.02941 * 7 5 4 9 9 C 1.54331 * 104.69230 * 140.22054 * 8 7 5 10 10 H 1.09001 * 112.59821 * 262.02861 * 9 8 7 11 11 C 1.54169 * 109.65500 * 137.80055 * 9 8 7 12 12 C 1.54843 * 104.32556 * 223.42034 * 11 9 8 13 13 C 1.54840 * 102.73500 * 38.18879 * 12 11 9 14 14 C 1.54166 * 104.32903 * 321.81229 * 13 12 11 15 15 C 1.53005 * 111.81953 * 261.25095 * 14 13 12 16 16 N 1.46505 * 109.46904 * 298.97995 * 15 14 13 17 17 C 1.36931 * 119.99788 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 15 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48508 * 109.46872 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 119.99997 * 21 19 17 24 24 H 1.48498 * 109.47018 * 240.00044 * 21 19 17 25 25 C 1.50619 * 127.74573 * 180.30822 * 7 5 4 26 26 H 1.07995 * 119.99940 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.00026 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00328 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.46839 * 5.00141 * 3 2 1 30 30 H 1.08996 * 109.47450 * 244.99831 * 3 2 1 31 31 H 1.09007 * 109.46729 * 60.00585 * 4 3 2 32 32 H 1.08997 * 109.47755 * 300.00423 * 4 3 2 33 33 H 1.09005 * 110.39470 * 21.42104 * 8 7 5 34 34 H 1.08994 * 110.49098 * 259.07309 * 8 7 5 35 35 H 1.08999 * 110.46159 * 104.70976 * 11 9 8 36 36 H 1.08999 * 110.56878 * 342.18935 * 11 9 8 37 37 H 1.08994 * 110.75931 * 279.87537 * 12 11 9 38 38 H 1.09005 * 110.91542 * 156.56829 * 12 11 9 39 39 H 1.08998 * 110.46422 * 203.09931 * 13 12 11 40 40 H 1.08999 * 110.46501 * 80.52011 * 13 12 11 41 41 H 1.09003 * 109.46946 * 178.98754 * 15 14 13 42 42 H 1.08993 * 109.47679 * 58.98297 * 15 14 13 43 43 H 0.97000 * 119.99792 * 0.02562 * 16 15 14 44 44 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 45 45 H 1.09004 * 110.78240 * 101.42763 * 25 7 5 46 46 H 1.09001 * 111.15169 * 338.24417 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.7881 2.6384 1.1820 6 8 3.5690 3.4652 0.3221 7 7 4.7050 2.8872 2.1380 8 6 5.1082 2.0094 3.2608 9 6 6.6382 2.1834 3.3638 10 1 7.1853 1.3854 2.8618 11 6 7.0493 2.2905 4.8458 12 6 8.0812 3.4446 4.8748 13 6 7.4947 4.4524 3.8560 14 6 6.9234 3.5679 2.7300 15 6 7.8845 3.4660 1.5438 16 7 8.1111 4.8003 0.9829 17 6 8.9418 4.9582 -0.0941 18 1 9.4297 4.0991 -0.5304 19 6 9.1520 6.2217 -0.6292 20 7 8.5571 7.2686 -0.0979 21 14 10.2792 6.4361 -2.1033 22 1 10.8213 5.1141 -2.5082 23 1 9.5127 7.0239 -3.2312 24 1 11.4001 7.3406 -1.7419 25 6 5.5472 4.1243 2.3082 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1317 0.0896 30 1 2.6214 1.4026 -0.9313 31 1 3.7400 0.5065 1.0921 32 1 2.4772 1.2356 2.1131 33 1 4.8580 0.9715 3.0404 34 1 4.6267 2.3272 4.1855 35 1 7.5080 1.3606 5.1822 36 1 6.1867 2.5348 5.4658 37 1 9.0614 3.0945 4.5514 38 1 8.1397 3.8894 5.8682 39 1 8.2790 5.1029 3.4689 40 1 6.7021 5.0422 4.3165 41 1 7.4519 2.8196 0.7802 42 1 8.8331 3.0472 1.8796 43 1 7.6726 5.5719 1.3745 44 1 8.7042 8.1516 -0.4716 45 1 5.1402 4.7645 3.0909 46 1 5.6311 4.6750 1.3713 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112282313.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:44 Heat of formation + Delta-G solvation = -13.146774 kcal Electronic energy + Delta-G solvation = -24127.936191 eV Core-core repulsion = 20824.617327 eV Total energy + Delta-G solvation = -3303.318864 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -40.37653 -38.64892 -35.46470 -34.73019 -34.25541 -31.67340 -30.88062 -29.70733 -28.95169 -25.98344 -25.47707 -24.20982 -23.14241 -22.01482 -20.31630 -19.94034 -18.89993 -18.32922 -17.31595 -16.52218 -16.05280 -15.60697 -15.33060 -14.98977 -14.61437 -14.48576 -13.87819 -13.59572 -13.35232 -13.09362 -12.95655 -12.80593 -12.71510 -12.24820 -12.13284 -11.86748 -11.48442 -11.18980 -11.17300 -11.13454 -10.92500 -10.81723 -10.74543 -10.52789 -10.50476 -10.31122 -10.17622 -9.90172 -9.66827 -9.59764 -9.39907 -8.82700 -8.49961 -6.86198 -5.71454 -2.99490 2.07549 2.86002 3.10552 3.47389 3.52829 3.55135 4.38797 4.49253 4.64368 4.71347 4.78449 4.80738 4.99919 5.13088 5.15297 5.20116 5.33441 5.37850 5.43422 5.46648 5.57548 5.61430 5.66519 5.67377 5.71119 5.82418 5.84950 5.91204 5.96970 6.05996 6.11523 6.18333 6.23002 6.28133 6.44238 6.45047 6.50946 6.51524 6.59459 6.74426 6.80368 6.88033 7.75426 7.79133 8.38877 8.47310 9.58777 10.15877 10.50718 11.51519 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.004564 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.719052 B = 6133.699677 C = 7878.005620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C -0.082 4.082 4 C -0.129 4.129 5 C 0.528 3.472 6 O -0.536 6.536 7 N -0.626 5.626 8 C 0.109 3.891 9 C -0.098 4.098 10 H 0.088 0.912 11 C -0.115 4.115 12 C -0.121 4.121 13 C -0.115 4.115 14 C -0.075 4.075 15 C 0.175 3.825 16 N -0.729 5.729 17 C -0.237 4.237 18 H 0.069 0.931 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.116 3.884 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.017 0.983 42 H 0.021 0.979 43 H 0.384 0.616 44 H 0.254 0.746 45 H 0.068 0.932 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.686 -15.321 11.247 21.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.169 4.169 3 C -0.119 4.119 4 C -0.169 4.169 5 C 0.316 3.684 6 O -0.412 6.412 7 N -0.361 5.361 8 C -0.014 4.014 9 C -0.118 4.118 10 H 0.106 0.894 11 C -0.153 4.153 12 C -0.159 4.159 13 C -0.153 4.153 14 C -0.076 4.076 15 C 0.047 3.953 16 N -0.374 5.374 17 C -0.368 4.368 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.006 4.006 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.126 0.874 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.035 0.965 42 H 0.039 0.961 43 H 0.219 0.781 44 H 0.064 0.936 45 H 0.086 0.914 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.792 -14.932 10.543 21.227 hybrid contribution 0.520 0.328 -0.656 0.899 sum -10.271 -14.604 9.886 20.409 Atomic orbital electron populations 1.23862 0.95979 1.01793 1.01722 1.22997 0.96070 0.98415 0.99408 1.20531 0.97847 0.95236 0.98310 1.21577 0.98734 0.95814 1.00774 1.20293 0.79021 0.88894 0.80169 1.90751 1.65413 1.48492 1.36586 1.49667 1.39424 1.19573 1.27418 1.22483 0.94650 0.94665 0.89602 1.22718 0.94616 0.98090 0.96371 0.89389 1.22424 0.99128 0.98849 0.94873 1.22473 0.98647 0.95831 0.98921 1.22484 1.00902 0.97402 0.94478 1.22256 0.95060 0.93875 0.96425 1.20507 0.94202 0.89430 0.91146 1.42365 1.55937 1.02783 1.36266 1.19238 1.19154 0.92909 1.05529 0.91295 1.24716 1.00831 0.95627 0.99731 1.69662 1.47129 0.98268 1.43024 0.86135 0.80082 0.77431 0.82658 1.20630 1.21884 1.21941 1.23079 0.87895 0.86542 1.03042 0.88534 0.88613 0.87373 0.90709 0.89980 0.89032 0.89232 0.90796 0.91087 0.91811 0.91556 0.91385 0.91874 0.89694 0.91874 0.96530 0.96106 0.78150 0.93605 0.91353 0.88258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.65 14.32 29.01 0.42 -1.24 16 2 C -0.15 -1.37 9.52 -36.02 -0.34 -1.71 16 3 C -0.08 -0.93 4.95 -27.88 -0.14 -1.06 16 4 C -0.13 -1.41 4.66 -27.88 -0.13 -1.54 16 5 C 0.53 8.40 7.92 -10.99 -0.09 8.31 16 6 O -0.54 -11.14 16.31 5.56 0.09 -11.05 16 7 N -0.63 -9.29 3.36 -167.31 -0.56 -9.85 16 8 C 0.11 1.17 6.48 -2.45 -0.02 1.16 16 9 C -0.10 -1.17 3.52 -88.30 -0.31 -1.48 16 10 H 0.09 1.05 7.88 -51.93 -0.41 0.64 16 11 C -0.11 -1.14 6.38 -25.15 -0.16 -1.30 16 12 C -0.12 -1.43 6.90 -24.79 -0.17 -1.60 16 13 C -0.11 -1.70 5.68 -25.15 -0.14 -1.84 16 14 C -0.07 -1.18 0.61 -152.19 -0.09 -1.27 16 15 C 0.17 3.56 5.20 -4.04 -0.02 3.54 16 16 N -0.73 -18.56 4.59 -59.90 -0.27 -18.83 16 17 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 18 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -28.67 13.06 55.49 0.72 -27.94 16 21 Si 0.91 23.02 29.55 -169.99 -5.02 17.99 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 25 C 0.12 1.97 6.08 -1.04 -0.01 1.96 16 26 H 0.10 0.81 7.84 -52.49 -0.41 0.40 16 27 H 0.10 0.66 8.06 -52.49 -0.42 0.24 16 28 H 0.11 0.84 8.06 -52.49 -0.42 0.41 16 29 H 0.07 0.92 7.75 -51.92 -0.40 0.51 16 30 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 31 H 0.09 0.85 7.95 -51.92 -0.41 0.44 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.63 7.30 -51.93 -0.38 0.25 16 34 H 0.07 0.66 7.26 -51.93 -0.38 0.28 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.58 7.25 -51.93 -0.38 0.21 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.53 7.16 -51.93 -0.37 1.16 16 40 H 0.06 0.87 7.19 -51.93 -0.37 0.49 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.38 10.21 6.60 -40.82 -0.27 9.95 16 44 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 45 H 0.07 1.07 7.20 -51.93 -0.37 0.69 16 46 H 0.10 2.16 6.98 -51.93 -0.36 1.80 16 LS Contribution 363.47 15.07 5.48 5.48 Total: -1.00 -33.46 363.47 -8.89 -42.35 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -7.87 Total: 7.34 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -1.45 Total: -5.49 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.11 Total: -56.62 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.46 -8.89 -42.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112282313.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.198 kcal (2) G-P(sol) polarization free energy of solvation -33.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds