Wall clock time and date at job start Tue Mar 31 2020 07:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47213 * 2 1 4 4 C 1.53003 * 109.47166 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47274 * 185.06261 * 4 3 2 6 6 C 1.50695 * 115.55190 * 294.80569 * 5 4 3 7 7 O 1.21291 * 119.99736 * 99.24143 * 6 5 4 8 8 N 1.34776 * 120.00024 * 279.24134 * 6 5 4 9 9 C 1.46502 * 119.99493 * 184.99774 * 8 6 5 10 10 H 1.09000 * 115.51840 * 9.58841 * 9 8 6 11 11 C 1.57122 * 116.92017 * 222.98880 * 9 8 6 12 12 H 1.08997 * 120.52179 * 3.46754 * 11 9 8 13 13 C 1.54389 * 118.20106 * 161.41175 * 11 9 8 14 14 N 1.48144 * 104.61651 * 86.20115 * 13 11 9 15 15 C 1.36938 * 127.83686 * 140.41446 * 14 13 11 16 16 H 1.08001 * 119.99859 * 195.60430 * 15 14 13 17 17 C 1.38816 * 120.00234 * 15.60497 * 15 14 13 18 18 N 1.31625 * 119.99551 * 8.93301 * 17 15 14 19 19 Si 1.86794 * 120.00389 * 188.93161 * 17 15 14 20 20 H 1.48500 * 109.47224 * 59.99763 * 19 17 15 21 21 H 1.48500 * 109.47466 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46971 * 300.00086 * 19 17 15 23 23 C 1.48150 * 104.32670 * 320.41046 * 14 13 11 24 24 C 1.53002 * 117.43776 * 155.00440 * 9 8 6 25 25 H 1.09005 * 119.53981 * 354.23510 * 24 9 8 26 26 C 1.53003 * 117.51242 * 80.50819 * 5 4 3 27 27 C 1.52996 * 59.99979 * 107.48029 * 26 5 4 28 28 H 1.08998 * 109.47159 * 59.99724 * 1 2 3 29 29 H 1.09003 * 109.47108 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47070 * 299.99837 * 1 2 3 31 31 H 1.09007 * 109.47116 * 239.99923 * 2 1 3 32 32 H 1.08998 * 109.47159 * 120.00276 * 2 1 3 33 33 H 1.08998 * 109.46970 * 60.00102 * 3 2 1 34 34 H 1.08998 * 109.47284 * 300.00200 * 3 2 1 35 35 H 1.09001 * 109.47064 * 65.06695 * 4 3 2 36 36 H 1.08998 * 109.47211 * 305.06779 * 4 3 2 37 37 H 0.96993 * 120.00003 * 4.99835 * 8 6 5 38 38 H 1.08999 * 110.40453 * 327.41421 * 13 11 9 39 39 H 1.08997 * 110.40346 * 204.98792 * 13 11 9 40 40 H 0.97002 * 119.99641 * 180.02562 * 18 17 15 41 41 H 1.08992 * 110.40414 * 158.37097 * 23 14 13 42 42 H 1.08995 * 110.40622 * 280.80351 * 23 14 13 43 43 H 1.09002 * 117.49548 * 214.96736 * 26 5 4 44 44 H 1.08998 * 117.50109 * 359.97438 * 26 5 4 45 45 H 1.09003 * 117.50155 * 252.50536 * 27 26 5 46 46 H 1.09002 * 117.52024 * 107.47714 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8793 0.1279 6 6 3.7594 3.7879 -1.0308 7 8 2.8224 4.5547 -0.9589 8 7 4.5139 3.7484 -2.1469 9 6 4.2714 4.7057 -3.2290 10 1 3.5806 5.5154 -2.9938 11 6 4.2933 4.1421 -4.6956 12 1 4.4258 3.0755 -4.8768 13 6 3.6294 4.9803 -5.8092 14 7 4.6876 5.9172 -6.2531 15 6 4.9711 6.3199 -7.5309 16 1 5.9127 6.8017 -7.7489 17 6 4.0481 6.1088 -8.5461 18 7 2.8361 5.6852 -8.2559 19 14 4.5260 6.4259 -10.3238 20 1 5.6700 5.5535 -10.6920 21 1 3.3707 6.1274 -11.2078 22 1 4.9171 7.8493 -10.4849 23 6 5.3696 6.3198 -5.0011 24 6 5.4407 5.0253 -4.1627 25 1 6.4279 4.6166 -3.9470 26 6 4.1040 3.4995 1.5264 27 6 5.4135 3.0945 0.8466 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6766 1.9562 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 3.9337 1.0091 -0.9310 36 1 3.9330 0.8521 0.8420 37 1 5.2173 3.0862 -2.2336 38 1 2.7761 5.5308 -5.4131 39 1 3.3193 4.3388 -6.6340 40 1 2.1913 5.5374 -8.9653 41 1 6.3724 6.6888 -5.2163 42 1 4.7881 7.0795 -4.4789 43 1 3.8880 4.5647 1.6083 44 1 3.7561 2.8840 2.3560 45 1 5.9273 2.2125 1.2289 46 1 6.0590 3.8931 0.4809 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114787481.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:11 Heat of formation + Delta-G solvation = 28.957659 kcal Electronic energy + Delta-G solvation = -23356.160914 eV Core-core repulsion = 20054.667835 eV Total energy + Delta-G solvation = -3301.493079 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.25030 -38.54432 -37.01154 -35.10551 -34.40451 -32.54273 -30.27440 -30.08123 -27.14295 -25.94310 -24.91488 -23.31721 -22.73874 -21.34791 -21.14754 -20.40643 -19.31281 -19.13120 -16.97084 -16.80563 -16.20879 -15.63819 -15.56370 -14.77645 -14.60593 -14.07758 -13.93788 -13.67113 -13.27786 -13.24939 -13.06549 -12.74219 -12.34268 -12.23075 -11.80103 -11.75811 -11.56401 -11.50348 -11.43621 -11.22068 -10.99577 -10.81332 -10.75538 -10.54862 -10.38691 -10.21037 -10.16891 -10.15885 -9.73341 -9.63814 -9.19005 -8.73485 -8.22784 -6.86608 -5.79005 -3.13810 2.61943 3.05159 3.39008 3.43285 3.44854 3.45106 4.25360 4.28746 4.45949 4.52281 4.61800 4.73397 4.85645 4.89741 5.03059 5.11192 5.27668 5.36018 5.36927 5.38476 5.39773 5.52600 5.57931 5.60707 5.63288 5.72271 5.79032 5.79781 5.82898 5.87711 5.89593 6.00249 6.12700 6.17561 6.23377 6.27693 6.53073 6.68242 6.82442 6.89341 7.37619 7.54496 7.62464 7.72013 8.21045 8.32236 9.11104 9.73842 10.51014 11.35087 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.021025 B = 0.003145 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.441002 B = 8902.048591 C = 9823.770054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.120 4.120 4 C -0.073 4.073 5 C -0.154 4.154 6 C 0.552 3.448 7 O -0.532 6.532 8 N -0.693 5.693 9 C 0.093 3.907 10 H 0.132 0.868 11 C -0.180 4.180 12 H 0.103 0.897 13 C 0.185 3.815 14 N -0.593 5.593 15 C -0.229 4.229 16 H 0.076 0.924 17 C -0.005 4.005 18 N -0.914 5.914 19 Si 0.914 3.086 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.283 1.283 23 C 0.155 3.845 24 C -0.179 4.179 25 H 0.101 0.899 26 C -0.144 4.144 27 C -0.165 4.165 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.399 0.601 38 H 0.026 0.974 39 H 0.091 0.909 40 H 0.255 0.745 41 H 0.052 0.948 42 H 0.027 0.973 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.071 -11.095 19.487 22.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.157 4.157 4 C -0.111 4.111 5 C -0.158 4.158 6 C 0.338 3.662 7 O -0.408 6.408 8 N -0.340 5.340 9 C -0.013 4.013 10 H 0.150 0.850 11 C -0.202 4.202 12 H 0.121 0.879 13 C 0.059 3.941 14 N -0.316 5.316 15 C -0.357 4.357 16 H 0.094 0.906 17 C -0.202 4.202 18 N -0.560 5.560 19 Si 0.744 3.256 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.210 1.210 23 C 0.028 3.972 24 C -0.200 4.200 25 H 0.119 0.881 26 C -0.182 4.182 27 C -0.202 4.202 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.233 0.767 38 H 0.044 0.956 39 H 0.109 0.891 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.044 0.956 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.289 -10.486 19.262 22.051 hybrid contribution 0.686 -0.274 -1.004 1.247 sum 2.975 -10.760 18.258 21.400 Atomic orbital electron populations 1.21771 0.95839 1.01394 1.02095 1.21522 0.96059 0.96767 1.01720 1.21589 0.94391 0.96646 1.03111 1.21079 0.96183 0.91210 1.02603 1.21479 1.03559 0.97268 0.93466 1.19446 0.81838 0.82595 0.82347 1.90712 1.28537 1.39952 1.81587 1.45336 1.36658 1.35279 1.16761 1.22527 1.01407 0.94567 0.82772 0.85011 1.25385 1.02871 0.98713 0.93195 0.87900 1.21055 0.89562 0.90913 0.92595 1.45173 1.36419 1.49206 1.00848 1.18946 0.99798 1.34669 0.82333 0.90589 1.24911 0.95099 1.01657 0.98551 1.69896 1.03613 1.51090 1.31418 0.86181 0.77206 0.78064 0.84177 1.21096 1.21525 1.20974 1.21130 0.96790 0.91721 0.87560 1.24315 0.93498 1.01091 1.01125 0.88144 1.22963 0.99860 1.02046 0.93286 1.23137 0.90236 1.03817 1.02990 0.92507 0.92925 0.92789 0.92064 0.92271 0.91609 0.91514 0.91183 0.90949 0.76745 0.95643 0.89104 0.93464 0.93001 0.95567 0.88109 0.87949 0.87915 0.88275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.12 -1.03 5.93 -26.74 -0.16 -1.19 16 3 C -0.12 -1.19 5.02 -26.73 -0.13 -1.33 16 4 C -0.07 -0.64 5.09 -26.73 -0.14 -0.77 16 5 C -0.15 -1.58 1.87 -155.66 -0.29 -1.87 16 6 C 0.55 7.92 6.47 -10.99 -0.07 7.85 16 7 O -0.53 -9.90 16.60 5.55 0.09 -9.81 16 8 N -0.69 -9.50 5.57 -51.64 -0.29 -9.79 16 9 C 0.09 1.60 6.18 -65.69 -0.41 1.19 16 10 H 0.13 2.57 7.43 -51.93 -0.39 2.18 16 11 C -0.18 -3.47 7.23 -86.98 -0.63 -4.10 16 12 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 13 C 0.18 4.53 5.73 -2.41 -0.01 4.51 16 14 N -0.59 -15.34 3.38 -168.86 -0.57 -15.91 16 15 C -0.23 -6.42 10.35 -15.06 -0.16 -6.58 16 16 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 17 C 0.00 -0.14 5.40 -17.43 -0.09 -0.23 16 18 N -0.91 -26.98 10.86 55.49 0.60 -26.37 16 19 Si 0.91 21.97 29.56 -169.99 -5.03 16.95 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C 0.15 3.28 7.03 -2.40 -0.02 3.26 16 24 C -0.18 -3.18 6.91 -89.22 -0.62 -3.79 16 25 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 26 C -0.14 -1.32 9.88 -26.73 -0.26 -1.58 16 27 C -0.16 -1.32 9.92 -26.73 -0.27 -1.58 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.84 7.87 -51.93 -0.41 0.43 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 37 H 0.40 4.39 8.83 -40.82 -0.36 4.03 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 2.47 6.51 -51.93 -0.34 2.13 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 375.38 15.07 5.66 5.66 Total: -1.00 -31.84 375.38 -10.64 -42.48 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -8.22 Total: 3.95 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -2.88 Total: -7.15 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.26 Total: -52.07 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.84 -10.64 -42.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114787481.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.435 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds