Wall clock time and date at job start Tue Mar 31 2020 07:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.38824 * 119.99892 * 2 1 4 4 C 1.39797 * 119.58390 * 192.21361 * 3 2 1 5 5 C 1.38605 * 119.48956 * 179.97438 * 4 3 2 6 6 C 1.38384 * 118.68187 * 359.97438 * 5 4 3 7 7 C 1.40562 * 119.14867 * 0.02562 * 6 5 4 8 8 C 1.41315 * 119.78426 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99699 * 6.28941 * 8 7 6 10 10 C 1.40022 * 120.00217 * 186.28579 * 8 7 6 11 11 N 1.30751 * 119.99590 * 6.22593 * 10 8 7 12 12 Si 1.86797 * 120.00308 * 186.22962 * 10 8 7 13 13 H 1.48501 * 109.47161 * 94.99075 * 12 10 8 14 14 H 1.48499 * 109.46981 * 214.99518 * 12 10 8 15 15 H 1.48500 * 109.46739 * 334.99115 * 12 10 8 16 16 N 1.31954 * 119.58535 * 11.94316 * 3 2 1 17 17 C 1.46494 * 120.00289 * 180.02562 * 2 1 3 18 18 H 1.09005 * 109.47625 * 186.51361 * 17 2 1 19 19 C 1.53005 * 109.47348 * 66.51338 * 17 2 1 20 20 O 1.42902 * 109.46706 * 293.96924 * 19 17 2 21 21 C 1.53008 * 109.46974 * 306.51278 * 17 2 1 22 22 C 1.52994 * 109.47066 * 292.58391 * 21 17 2 23 23 C 1.53006 * 109.47033 * 65.87124 * 22 21 17 24 24 C 1.52996 * 109.47374 * 185.86935 * 22 21 17 25 25 C 1.53000 * 109.47264 * 305.87258 * 22 21 17 26 26 H 1.08996 * 109.47482 * 275.34218 * 1 2 3 27 27 H 1.09004 * 109.47471 * 35.34413 * 1 2 3 28 28 H 1.09004 * 109.47293 * 155.34284 * 1 2 3 29 29 H 1.08000 * 120.25808 * 359.96173 * 4 3 2 30 30 H 1.07997 * 120.65879 * 180.02562 * 5 4 3 31 31 H 1.07999 * 120.42792 * 179.97438 * 6 5 4 32 32 H 0.97000 * 119.99310 * 180.02562 * 11 10 8 33 33 H 1.08998 * 109.47117 * 53.97069 * 19 17 2 34 34 H 1.09003 * 109.47044 * 173.97499 * 19 17 2 35 35 H 0.96698 * 113.99568 * 179.97438 * 20 19 17 36 36 H 1.09001 * 109.46992 * 172.58594 * 21 17 2 37 37 H 1.08995 * 109.46915 * 52.58843 * 21 17 2 38 38 H 1.08996 * 109.46805 * 52.64268 * 23 22 21 39 39 H 1.08996 * 109.47043 * 172.64240 * 23 22 21 40 40 H 1.09003 * 109.46727 * 292.64206 * 23 22 21 41 41 H 1.09004 * 109.46992 * 60.00062 * 24 22 21 42 42 H 1.08993 * 109.47775 * 180.02562 * 24 22 21 43 43 H 1.08997 * 109.46945 * 300.00674 * 24 22 21 44 44 H 1.08998 * 109.47304 * 60.00120 * 25 22 21 45 45 H 1.09002 * 109.46935 * 179.97438 * 25 22 21 46 46 H 1.09004 * 109.46904 * 299.99816 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1590 1.2023 0.0000 4 6 3.5331 1.2059 -0.2572 5 6 4.2241 2.4074 -0.2572 6 6 3.5265 3.5748 -0.0012 7 6 2.1453 3.5058 0.2503 8 6 1.4197 4.6895 0.5138 9 1 1.9032 5.6509 0.4220 10 6 0.0741 4.6160 0.8940 11 7 -0.4777 3.4530 1.1235 12 14 -0.9326 6.1792 1.0732 13 1 -1.6707 6.4400 -0.1887 14 1 -1.8999 6.0198 2.1887 15 1 -0.0275 7.3204 1.3622 16 7 1.5125 2.3278 0.2375 17 6 2.1975 -1.2686 -0.0006 18 1 3.2634 -1.0729 0.1161 19 6 1.9547 -1.9972 -1.3239 20 8 0.5803 -2.3783 -1.4126 21 6 1.7092 -2.1400 1.1585 22 6 2.1171 -1.4982 2.4861 23 6 1.3746 -0.1719 2.6608 24 6 1.7592 -2.4387 3.6385 25 6 3.6255 -1.2421 2.4865 26 1 -0.3634 0.0957 1.0231 27 1 -0.3634 0.8383 -0.5945 28 1 -0.3634 -0.9340 -0.4287 29 1 4.0524 0.2796 -0.4541 30 1 5.2857 2.4322 -0.4540 31 1 4.0368 4.5266 0.0061 32 1 -1.4100 3.4021 1.3865 33 1 2.2026 -1.3355 -2.1538 34 1 2.5821 -2.8874 -1.3690 35 1 0.3536 -2.8457 -2.2282 36 1 2.1564 -3.1311 1.0814 37 1 0.6236 -2.2270 1.1153 38 1 0.3047 -0.3346 2.5302 39 1 1.5630 0.2211 3.6598 40 1 1.7270 0.5425 1.9168 41 1 2.2882 -3.3836 3.5140 42 1 2.0494 -1.9814 4.5843 43 1 0.6846 -2.6212 3.6381 44 1 3.8805 -0.5720 1.6655 45 1 3.9160 -0.7844 3.4322 46 1 4.1545 -2.1870 2.3620 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117801461.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:35 Heat of formation + Delta-G solvation = -1.007568 kcal Electronic energy + Delta-G solvation = -25588.973533 eV Core-core repulsion = 22286.181064 eV Total energy + Delta-G solvation = -3302.792468 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.50349 -37.56408 -36.32130 -34.57427 -33.24874 -31.00480 -29.97098 -28.90894 -27.02972 -26.62498 -26.11924 -25.57691 -24.31523 -21.64639 -20.98346 -19.48325 -18.16612 -17.68615 -17.01738 -15.88221 -15.15736 -15.07534 -14.76258 -14.36493 -14.10420 -13.74924 -13.69160 -13.40100 -13.00962 -12.84216 -12.51608 -12.20824 -12.02432 -11.86839 -11.61561 -11.38291 -11.29332 -11.17526 -11.00075 -10.94406 -10.74474 -10.70153 -10.51001 -10.37107 -10.07492 -10.04684 -9.87297 -9.83567 -9.61868 -9.26807 -8.39837 -7.84431 -7.40539 -6.33355 -6.25591 -4.41266 2.89905 3.14197 3.17171 3.27710 3.31736 4.01784 4.05339 4.48569 4.87239 4.97198 5.20477 5.26678 5.48387 5.50601 5.63086 5.71182 5.87049 5.97060 5.99872 6.04061 6.11205 6.12516 6.16752 6.23723 6.36222 6.41739 6.52515 6.57664 6.60970 6.65418 6.77558 6.79311 6.84185 6.91238 6.93962 7.04587 7.20572 7.26700 7.42151 7.65510 7.77300 7.87895 8.01710 8.11380 8.44620 8.63896 8.86407 9.17127 10.28491 10.44404 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.016230 B = 0.005620 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.791573 B = 4981.150063 C = 5126.846081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.604 5.604 3 C 0.416 3.584 4 C -0.372 4.372 5 C -0.031 4.031 6 C -0.319 4.319 7 C 0.293 3.707 8 C -0.435 4.435 9 H 0.081 0.919 10 C 0.075 3.925 11 N -0.710 5.710 12 Si 0.901 3.099 13 H -0.271 1.271 14 H -0.278 1.278 15 H -0.263 1.263 16 N -0.523 5.523 17 C 0.159 3.841 18 H 0.103 0.897 19 C 0.063 3.937 20 O -0.560 6.560 21 C -0.109 4.109 22 C -0.064 4.064 23 C -0.152 4.152 24 C -0.137 4.137 25 C -0.147 4.147 26 H 0.039 0.961 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.269 0.731 33 H 0.047 0.953 34 H 0.042 0.958 35 H 0.366 0.634 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.030 0.970 40 H 0.101 0.899 41 H 0.046 0.954 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.068 0.932 45 H 0.048 0.952 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.877 -11.314 -0.702 11.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.321 5.321 3 C 0.177 3.823 4 C -0.397 4.397 5 C -0.055 4.055 6 C -0.342 4.342 7 C 0.166 3.834 8 C -0.467 4.467 9 H 0.099 0.901 10 C -0.151 4.151 11 N -0.331 5.331 12 Si 0.726 3.274 13 H -0.197 1.197 14 H -0.203 1.203 15 H -0.187 1.187 16 N -0.244 5.244 17 C 0.053 3.947 18 H 0.121 0.879 19 C -0.016 4.016 20 O -0.365 6.365 21 C -0.148 4.148 22 C -0.065 4.065 23 C -0.209 4.209 24 C -0.195 4.195 25 C -0.204 4.204 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.213 0.787 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.049 0.951 40 H 0.120 0.880 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.708 -11.214 0.125 11.237 hybrid contribution 0.567 0.407 -0.583 0.909 sum 1.274 -10.807 -0.458 10.892 Atomic orbital electron populations 1.21551 0.79766 1.01067 1.00873 1.45953 1.04729 1.00911 1.80533 1.18391 0.87320 0.87029 0.89527 1.20617 0.94717 0.96957 1.27438 1.20564 0.96863 0.92795 0.95277 1.21518 0.96287 0.96619 1.19775 1.18208 0.88091 0.90454 0.86597 1.19543 0.94805 0.92834 1.39509 0.90111 1.25987 0.98378 0.96822 0.93887 1.70109 1.11960 1.24474 1.26606 0.86422 0.79838 0.82643 0.78500 1.19656 1.20329 1.18708 1.68265 1.36330 0.95843 1.23997 1.21090 0.97632 0.83982 0.91982 0.87927 1.22820 0.82502 0.97115 0.99179 1.86568 1.26647 1.79009 1.44248 1.21897 1.02094 0.97207 0.93589 1.20482 0.95514 0.96281 0.94174 1.22350 0.99703 0.96903 1.01953 1.21866 1.00837 0.98633 0.98123 1.22002 0.95220 1.00783 1.02373 0.94223 0.92297 0.91571 0.89351 0.89177 0.88958 0.91940 0.93436 0.93941 0.78749 0.92423 0.90948 0.93102 0.95092 0.88027 0.93494 0.93186 0.93128 0.91316 0.93292 0.93683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.21 8.49 59.84 0.51 2.72 16 2 N -0.60 -11.90 1.39 -174.05 -0.24 -12.14 16 3 C 0.42 9.74 5.14 -155.32 -0.80 8.94 16 4 C -0.37 -8.28 8.33 -38.86 -0.32 -8.60 16 5 C -0.03 -0.70 10.15 -39.39 -0.40 -1.10 16 6 C -0.32 -8.01 9.83 -38.65 -0.38 -8.39 16 7 C 0.29 8.03 6.53 -85.00 -0.55 7.48 16 8 C -0.43 -11.70 9.13 -37.74 -0.34 -12.04 16 9 H 0.08 2.07 7.85 -52.49 -0.41 1.65 16 10 C 0.07 1.90 5.48 -17.34 -0.09 1.80 16 11 N -0.71 -18.51 11.54 55.55 0.64 -17.86 16 12 Si 0.90 18.82 29.56 -169.99 -5.03 13.80 16 13 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 14 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 15 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 16 N -0.52 -13.91 6.79 -10.33 -0.07 -13.98 16 17 C 0.16 2.54 2.03 -67.93 -0.14 2.40 16 18 H 0.10 1.68 3.47 -51.93 -0.18 1.50 16 19 C 0.06 0.85 6.84 37.16 0.25 1.11 16 20 O -0.56 -7.29 10.09 -35.23 -0.36 -7.64 16 21 C -0.11 -1.61 3.48 -26.73 -0.09 -1.71 16 22 C -0.06 -1.00 0.80 -154.51 -0.12 -1.12 16 23 C -0.15 -2.92 6.83 37.16 0.25 -2.66 16 24 C -0.14 -1.84 8.47 37.16 0.31 -1.53 16 25 C -0.15 -2.23 7.97 37.16 0.30 -1.93 16 26 H 0.04 0.83 5.47 -51.93 -0.28 0.55 16 27 H 0.06 1.35 7.76 -51.93 -0.40 0.95 16 28 H 0.07 1.19 4.99 -51.93 -0.26 0.93 16 29 H 0.09 1.75 5.92 -52.49 -0.31 1.44 16 30 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 31 H 0.09 2.19 8.06 -52.49 -0.42 1.76 16 32 H 0.27 6.46 8.29 -40.82 -0.34 6.12 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.37 3.12 9.12 45.56 0.42 3.54 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.15 6.71 -51.93 -0.35 0.81 16 38 H 0.05 0.99 6.09 -51.93 -0.32 0.67 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.10 2.26 3.71 -51.93 -0.19 2.07 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.07 1.17 5.11 -51.93 -0.27 0.90 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 344.07 15.07 5.19 5.19 Total: -1.00 -28.87 344.07 -7.83 -36.70 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -6.34 Total: 10.57 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -1.62 Total: -14.62 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.33 Total: -43.99 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.36 Total: -7.64 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.87 -7.83 -36.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117801461.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.690 kcal (2) G-P(sol) polarization free energy of solvation -28.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds