Wall clock time and date at job start Tue Mar 31 2020 07:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50703 * 120.00516 * 2 1 4 4 C 1.52995 * 109.47654 * 124.99697 * 3 2 1 5 5 C 1.52995 * 109.47335 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.46841 * 180.02562 * 5 4 3 7 7 O 1.21281 * 120.00352 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99605 * 179.97438 * 6 5 4 9 9 C 1.46498 * 119.99983 * 180.02562 * 8 6 5 10 10 C 1.53954 * 113.58380 * 205.00420 * 9 8 6 11 11 C 1.52905 * 86.78040 * 220.66109 * 10 9 8 12 12 C 1.52917 * 121.13340 * 150.61456 * 11 10 9 13 13 C 1.53957 * 86.77928 * 150.61497 * 12 11 10 14 14 N 1.46499 * 113.58030 * 220.66444 * 13 12 11 15 15 C 1.36934 * 119.99782 * 205.00320 * 14 13 12 16 16 H 1.07999 * 120.00173 * 0.02562 * 15 14 13 17 17 C 1.38814 * 119.99964 * 179.97438 * 15 14 13 18 18 N 1.31618 * 119.99878 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00317 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47218 * 59.99593 * 19 17 15 21 21 H 1.48500 * 109.47316 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46900 * 299.99931 * 19 17 15 23 23 C 1.52909 * 121.13655 * 259.17353 * 11 10 9 24 24 C 1.52910 * 88.04631 * 24.89586 * 11 10 9 25 25 H 1.08002 * 120.00255 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.00372 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.00255 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.46377 * 4.99963 * 3 2 1 29 29 H 1.08998 * 109.47181 * 245.00557 * 3 2 1 30 30 H 1.09003 * 109.46782 * 60.00154 * 4 3 2 31 31 H 1.09004 * 109.47186 * 300.00938 * 4 3 2 32 32 H 1.08996 * 109.47217 * 60.00628 * 5 4 3 33 33 H 1.08995 * 109.47123 * 300.00149 * 5 4 3 34 34 H 0.97003 * 120.00247 * 0.02562 * 8 6 5 35 35 H 1.09009 * 112.87577 * 336.14188 * 9 8 6 36 36 H 1.08990 * 113.66623 * 106.18266 * 10 9 8 37 37 H 1.09000 * 113.74113 * 335.14493 * 10 9 8 38 38 H 1.08997 * 113.66031 * 265.08631 * 12 11 10 39 39 H 1.09002 * 113.66187 * 36.15037 * 12 11 10 40 40 H 1.09001 * 113.57949 * 89.86751 * 13 12 11 41 41 H 0.96996 * 119.99947 * 24.99948 * 14 13 12 42 42 H 0.97005 * 120.00007 * 180.02562 * 18 17 15 43 43 H 1.09001 * 113.66026 * 323.85782 * 23 11 10 44 44 H 1.08998 * 113.66179 * 94.82069 * 23 11 10 45 45 H 1.09006 * 113.66074 * 89.56978 * 24 11 10 46 46 H 1.08994 * 113.66448 * 220.62942 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7996 2.6583 1.1819 6 6 4.7570 2.6856 2.3454 7 8 4.8217 1.7382 3.0999 8 7 5.5420 3.7624 2.5471 9 6 6.4731 3.7888 3.6778 10 6 6.8325 5.2104 4.1467 11 6 8.2652 4.7016 4.3095 12 6 9.4612 5.6395 4.1418 13 6 10.2015 4.7333 5.1423 14 7 11.0160 5.4719 6.1105 15 6 12.0916 4.8665 6.7034 16 1 12.3398 3.8447 6.4570 17 6 12.8637 5.5665 7.6204 18 7 12.5615 6.8120 7.9202 19 14 14.3315 4.7410 8.4287 20 1 15.3027 4.3256 7.3850 21 1 14.9841 5.6946 9.3615 22 1 13.8741 3.5463 9.1828 23 6 8.8194 4.3257 5.6841 24 6 7.9478 3.6307 3.2652 25 1 -0.5401 0.9353 0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6212 1.4026 -0.9314 30 1 3.7399 0.5065 1.0920 31 1 2.4772 1.2355 2.1130 32 1 3.0945 3.4846 1.2717 33 1 4.3573 2.7562 0.2506 34 1 5.4905 4.5201 1.9435 35 1 6.1736 3.1248 4.4888 36 1 6.3594 5.4937 5.0868 37 1 6.7230 5.9690 3.3717 38 1 9.8900 5.6268 3.1398 39 1 9.2819 6.6479 4.5148 40 1 10.7436 3.9140 4.6701 41 1 10.7933 6.3898 6.3314 42 1 13.1013 7.3013 8.5608 43 1 8.4597 4.9649 6.4905 44 1 8.7340 3.2638 5.9148 45 1 8.1515 3.9442 2.2412 46 1 8.3656 2.6520 3.5011 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121664068.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:00 Heat of formation + Delta-G solvation = 16.002182 kcal Electronic energy + Delta-G solvation = -22315.735177 eV Core-core repulsion = 19013.680307 eV Total energy + Delta-G solvation = -3302.054870 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.57744 -39.31760 -36.43966 -35.77807 -33.64860 -32.79337 -31.99592 -29.54930 -27.63532 -25.76315 -25.18112 -24.26119 -23.11564 -21.70020 -20.55608 -20.21114 -19.92967 -17.79861 -17.14262 -17.00880 -16.35587 -16.18114 -15.39875 -15.17852 -14.69510 -14.41899 -14.27952 -13.85988 -13.75319 -13.42662 -12.94978 -12.80651 -12.54416 -12.40841 -12.08914 -11.92858 -11.87557 -11.61590 -11.29234 -11.24564 -11.17278 -11.06200 -10.83587 -10.73088 -10.32304 -10.05839 -9.92159 -9.77973 -9.69769 -9.67371 -9.35594 -9.05000 -8.83514 -6.93477 -5.76173 -3.04518 1.90530 2.49970 3.06645 3.45173 3.49527 3.50540 4.37417 4.44927 4.58473 4.59423 4.61755 4.70519 4.80565 4.83997 4.88687 4.92477 5.13025 5.18801 5.27716 5.40263 5.40758 5.47031 5.54600 5.60745 5.71745 5.78775 5.82403 5.92573 5.96061 5.97974 6.00416 6.14205 6.21361 6.25586 6.27297 6.37870 6.39048 6.43360 6.54505 6.66939 6.95406 7.15753 7.39093 7.71544 8.10833 8.42784 9.53707 10.12491 10.46954 11.46257 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.049151 B = 0.002030 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.533927 B =13790.270348 C =14086.907203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C -0.096 4.096 4 C -0.100 4.100 5 C -0.142 4.142 6 C 0.509 3.491 7 O -0.541 6.541 8 N -0.721 5.721 9 C 0.122 3.878 10 C -0.131 4.131 11 C -0.101 4.101 12 C -0.136 4.136 13 C 0.168 3.832 14 N -0.713 5.713 15 C -0.243 4.243 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.934 5.934 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.142 4.142 24 C -0.124 4.124 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.399 0.601 35 H 0.113 0.887 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.080 0.920 44 H 0.056 0.944 45 H 0.082 0.918 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.882 -6.521 -17.921 29.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.169 4.169 3 C -0.133 4.133 4 C -0.138 4.138 5 C -0.182 4.182 6 C 0.296 3.704 7 O -0.418 6.418 8 N -0.371 5.371 9 C 0.018 3.982 10 C -0.169 4.169 11 C -0.102 4.102 12 C -0.175 4.175 13 C 0.056 3.944 14 N -0.351 5.351 15 C -0.375 4.375 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.582 5.582 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.183 4.183 24 C -0.163 4.163 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.127 0.873 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.233 0.767 35 H 0.131 0.869 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.099 0.901 44 H 0.075 0.925 45 H 0.100 0.900 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.655 -7.300 -17.279 28.650 hybrid contribution 0.675 0.316 0.260 0.790 sum -20.980 -6.985 -17.019 27.903 Atomic orbital electron populations 1.23851 0.95989 1.01811 1.01825 1.22968 0.96038 0.98632 0.99280 1.20806 0.98200 0.95496 0.98794 1.21283 0.97718 0.96265 0.98565 1.21714 0.98290 1.00664 0.97529 1.20769 0.80831 0.82426 0.86380 1.90715 1.68436 1.35240 1.47408 1.46121 1.40758 1.19549 1.30720 1.22602 0.87846 0.98542 0.89206 1.23172 0.96835 0.95357 1.01542 1.22092 0.93023 0.97308 0.97816 1.23266 0.95509 0.98645 1.00047 1.21539 0.89061 0.93925 0.89853 1.42407 1.31448 1.13973 1.47277 1.19281 1.03661 0.96611 1.17897 0.91155 1.24754 0.99710 0.96203 1.00265 1.69651 1.41373 1.09491 1.37670 0.86265 0.82648 0.78219 0.79048 1.21263 1.21699 1.21249 1.23603 1.00282 1.00579 0.93844 1.23135 0.95149 0.99333 0.98695 0.88655 0.88588 0.87337 0.91480 0.90904 0.90975 0.91051 0.88970 0.88899 0.76688 0.86920 0.90890 0.89968 0.92301 0.90231 0.90806 0.78130 0.93464 0.90141 0.92542 0.89967 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.21 14.32 29.02 0.42 -0.79 16 2 C -0.15 -0.99 9.52 -36.02 -0.34 -1.33 16 3 C -0.10 -0.56 5.66 -27.88 -0.16 -0.72 16 4 C -0.10 -0.76 4.49 -26.74 -0.12 -0.88 16 5 C -0.14 -0.94 5.70 -27.88 -0.16 -1.10 16 6 C 0.51 5.42 7.83 -10.98 -0.09 5.33 16 7 O -0.54 -8.21 15.58 5.56 0.09 -8.12 16 8 N -0.72 -6.72 5.35 -52.85 -0.28 -7.01 16 9 C 0.12 1.44 4.24 -66.95 -0.28 1.15 16 10 C -0.13 -1.51 7.59 -26.28 -0.20 -1.71 16 11 C -0.10 -1.42 1.11 -154.71 -0.17 -1.59 16 12 C -0.14 -2.20 7.59 -26.28 -0.20 -2.40 16 13 C 0.17 3.35 4.48 -66.95 -0.30 3.05 16 14 N -0.71 -18.02 5.40 -52.47 -0.28 -18.30 16 15 C -0.24 -6.82 9.97 -15.06 -0.15 -6.97 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 18 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 19 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 C -0.14 -2.48 7.64 -26.28 -0.20 -2.68 16 24 C -0.12 -1.55 7.64 -26.28 -0.20 -1.75 16 25 H 0.10 0.52 7.84 -52.49 -0.41 0.11 16 26 H 0.10 0.51 8.06 -52.49 -0.42 0.09 16 27 H 0.11 0.68 8.06 -52.49 -0.42 0.26 16 28 H 0.07 0.35 7.79 -51.93 -0.40 -0.06 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 31 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.40 2.53 8.73 -40.82 -0.36 2.17 16 35 H 0.11 1.57 7.47 -51.92 -0.39 1.19 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.81 8.12 -51.93 -0.42 0.38 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.33 8.12 -51.93 -0.42 0.91 16 40 H 0.07 1.49 8.10 -51.93 -0.42 1.07 16 41 H 0.38 10.27 7.92 -40.82 -0.32 9.94 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 379.36 15.07 5.72 5.72 Total: -1.00 -32.45 379.36 -9.50 -41.94 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -8.19 Total: 8.69 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -2.25 Total: -12.86 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.16 Total: -52.88 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.09 Total: -8.12 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.45 -9.50 -41.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121664068.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.946 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds