Wall clock time and date at job start Tue Mar 31 2020 07:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50703 * 120.00516 * 2 1 4 4 C 1.52995 * 109.47654 * 124.99697 * 3 2 1 5 5 C 1.52995 * 109.47335 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.46841 * 180.02562 * 5 4 3 7 7 O 1.21281 * 120.00352 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99605 * 179.97438 * 6 5 4 9 9 C 1.46498 * 119.99983 * 180.02562 * 8 6 5 10 10 C 1.53954 * 113.58380 * 205.00420 * 9 8 6 11 11 C 1.52905 * 86.78040 * 220.66109 * 10 9 8 12 12 C 1.52917 * 121.13340 * 150.61456 * 11 10 9 13 13 C 1.53957 * 86.77928 * 150.61497 * 12 11 10 14 14 N 1.46499 * 113.58030 * 220.66444 * 13 12 11 15 15 C 1.36934 * 119.99782 * 205.00320 * 14 13 12 16 16 H 1.07999 * 120.00173 * 0.02562 * 15 14 13 17 17 C 1.38814 * 119.99964 * 179.97438 * 15 14 13 18 18 N 1.31618 * 119.99878 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00317 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47218 * 59.99593 * 19 17 15 21 21 H 1.48500 * 109.47316 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46900 * 299.99931 * 19 17 15 23 23 C 1.52909 * 121.13655 * 259.17353 * 11 10 9 24 24 C 1.52910 * 88.04631 * 24.89586 * 11 10 9 25 25 H 1.08002 * 120.00255 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.00372 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.00255 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.46377 * 4.99963 * 3 2 1 29 29 H 1.08998 * 109.47181 * 245.00557 * 3 2 1 30 30 H 1.09003 * 109.46782 * 60.00154 * 4 3 2 31 31 H 1.09004 * 109.47186 * 300.00938 * 4 3 2 32 32 H 1.08996 * 109.47217 * 60.00628 * 5 4 3 33 33 H 1.08995 * 109.47123 * 300.00149 * 5 4 3 34 34 H 0.97003 * 120.00247 * 0.02562 * 8 6 5 35 35 H 1.09009 * 112.87577 * 336.14188 * 9 8 6 36 36 H 1.08990 * 113.66623 * 106.18266 * 10 9 8 37 37 H 1.09000 * 113.74113 * 335.14493 * 10 9 8 38 38 H 1.08997 * 113.66031 * 265.08631 * 12 11 10 39 39 H 1.09002 * 113.66187 * 36.15037 * 12 11 10 40 40 H 1.09001 * 113.57949 * 89.86751 * 13 12 11 41 41 H 0.96996 * 119.99947 * 24.99948 * 14 13 12 42 42 H 0.97005 * 120.00007 * 180.02562 * 18 17 15 43 43 H 1.09001 * 113.66026 * 323.85782 * 23 11 10 44 44 H 1.08998 * 113.66179 * 94.82069 * 23 11 10 45 45 H 1.09006 * 113.66074 * 89.56978 * 24 11 10 46 46 H 1.08994 * 113.66448 * 220.62942 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7996 2.6583 1.1819 6 6 4.7570 2.6856 2.3454 7 8 4.8217 1.7382 3.0999 8 7 5.5420 3.7624 2.5471 9 6 6.4731 3.7888 3.6778 10 6 6.8325 5.2104 4.1467 11 6 8.2652 4.7016 4.3095 12 6 9.4612 5.6395 4.1418 13 6 10.2015 4.7333 5.1423 14 7 11.0160 5.4719 6.1105 15 6 12.0916 4.8665 6.7034 16 1 12.3398 3.8447 6.4570 17 6 12.8637 5.5665 7.6204 18 7 12.5615 6.8120 7.9202 19 14 14.3315 4.7410 8.4287 20 1 15.3027 4.3256 7.3850 21 1 14.9841 5.6946 9.3615 22 1 13.8741 3.5463 9.1828 23 6 8.8194 4.3257 5.6841 24 6 7.9478 3.6307 3.2652 25 1 -0.5401 0.9353 0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6212 1.4026 -0.9314 30 1 3.7399 0.5065 1.0920 31 1 2.4772 1.2355 2.1130 32 1 3.0945 3.4846 1.2717 33 1 4.3573 2.7562 0.2506 34 1 5.4905 4.5201 1.9435 35 1 6.1736 3.1248 4.4888 36 1 6.3594 5.4937 5.0868 37 1 6.7230 5.9690 3.3717 38 1 9.8900 5.6268 3.1398 39 1 9.2819 6.6479 4.5148 40 1 10.7436 3.9140 4.6701 41 1 10.7933 6.3898 6.3314 42 1 13.1013 7.3013 8.5608 43 1 8.4597 4.9649 6.4905 44 1 8.7340 3.2638 5.9148 45 1 8.1515 3.9442 2.2412 46 1 8.3656 2.6520 3.5011 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121664068.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:59 Heat of formation + Delta-G solvation = -3.969941 kcal Electronic energy + Delta-G solvation = -22316.601233 eV Core-core repulsion = 19013.680307 eV Total energy + Delta-G solvation = -3302.920927 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.66036 -40.31801 -37.35253 -36.75093 -35.23459 -33.77063 -33.01582 -31.38664 -28.23274 -26.75982 -26.58238 -26.11036 -24.17157 -22.65463 -21.47840 -21.23293 -20.63563 -19.40456 -18.65683 -17.92371 -17.22861 -16.96823 -16.77697 -16.07661 -16.00285 -15.79931 -15.21739 -15.16788 -14.85239 -14.35506 -14.24316 -13.85846 -13.65241 -13.28849 -13.13774 -13.05896 -12.97540 -12.83108 -12.60535 -12.46051 -12.35395 -12.30786 -12.20165 -11.84418 -11.74910 -11.60171 -11.27045 -11.04774 -10.96525 -10.80919 -10.62682 -10.17006 -9.95044 -8.97706 -7.95063 -5.23034 1.43242 1.46407 1.49324 1.55453 1.69843 2.30308 2.56213 3.36099 3.50858 3.55852 3.68026 3.82042 3.87464 3.89812 4.00543 4.10449 4.28527 4.33034 4.36118 4.40078 4.48687 4.61816 4.69514 4.74555 4.80534 4.80725 4.83946 4.94288 4.96024 5.00984 5.06530 5.08927 5.11056 5.15547 5.25625 5.27959 5.43152 5.44120 5.56871 5.67513 5.70745 5.80178 5.92433 6.27558 6.66364 7.33255 7.36070 8.11333 8.34411 9.27962 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.049151 B = 0.002030 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.533927 B =13790.270348 C =14086.907203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 C -0.089 4.089 4 C -0.098 4.098 5 C -0.132 4.132 6 C 0.503 3.497 7 O -0.595 6.595 8 N -0.707 5.707 9 C 0.127 3.873 10 C -0.116 4.116 11 C -0.090 4.090 12 C -0.121 4.121 13 C 0.145 3.855 14 N -0.728 5.728 15 C -0.247 4.247 16 H 0.073 0.927 17 C -0.075 4.075 18 N -0.969 5.969 19 Si 0.972 3.028 20 H -0.277 1.277 21 H -0.294 1.294 22 H -0.280 1.280 23 C -0.140 4.140 24 C -0.119 4.119 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.419 0.581 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.374 0.626 42 H 0.251 0.749 43 H 0.065 0.935 44 H 0.051 0.949 45 H 0.106 0.894 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.079 -6.119 -20.322 31.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.185 4.185 3 C -0.126 4.126 4 C -0.136 4.136 5 C -0.171 4.171 6 C 0.292 3.708 7 O -0.475 6.475 8 N -0.358 5.358 9 C 0.022 3.978 10 C -0.154 4.154 11 C -0.091 4.091 12 C -0.160 4.160 13 C 0.036 3.964 14 N -0.366 5.366 15 C -0.379 4.379 16 H 0.091 0.909 17 C -0.267 4.267 18 N -0.620 5.620 19 Si 0.801 3.199 20 H -0.203 1.203 21 H -0.220 1.220 22 H -0.207 1.207 23 C -0.181 4.181 24 C -0.157 4.157 25 H 0.122 0.878 26 H 0.118 0.882 27 H 0.122 0.878 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.256 0.744 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.131 0.869 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.206 0.794 42 H 0.060 0.940 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.124 0.876 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.885 -6.906 -19.745 31.004 hybrid contribution 0.990 0.121 0.977 1.396 sum -21.895 -6.784 -18.768 29.625 Atomic orbital electron populations 1.24012 0.95983 1.02494 1.01158 1.23113 0.96431 0.99077 0.99927 1.20764 0.97980 0.95414 0.98399 1.21219 0.97588 0.96440 0.98391 1.21740 0.97912 1.00811 0.96640 1.21541 0.80912 0.81621 0.86715 1.90703 1.70056 1.37269 1.49522 1.45953 1.39712 1.20037 1.30117 1.22265 0.87991 0.98151 0.89422 1.23140 0.94033 0.95795 1.02439 1.21899 0.94064 0.97468 0.95696 1.23093 0.95456 0.97967 0.99444 1.21926 0.89343 0.94746 0.90398 1.42579 1.31727 1.13800 1.48449 1.19673 1.04074 0.96761 1.17431 0.90864 1.25553 1.02750 0.96955 1.01493 1.69805 1.42635 1.10889 1.38628 0.85230 0.79459 0.77147 0.78043 1.20312 1.22025 1.20669 1.23405 0.99036 0.99927 0.95715 1.23165 0.95335 0.97949 0.99261 0.87793 0.88207 0.87795 0.90255 0.89531 0.92911 0.93267 0.86199 0.86071 0.74375 0.89630 0.91197 0.86900 0.90613 0.90658 0.91352 0.79396 0.94015 0.91612 0.93047 0.87582 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.19 14.32 67.79 0.97 -1.22 16 2 C -0.17 -2.02 9.52 25.66 0.24 -1.78 16 3 C -0.09 -0.84 5.66 29.85 0.17 -0.67 16 4 C -0.10 -1.37 4.49 30.59 0.14 -1.24 16 5 C -0.13 -1.34 5.70 29.85 0.17 -1.17 16 6 C 0.50 9.80 7.83 87.66 0.69 10.49 16 7 O -0.59 -18.12 15.58 -3.03 -0.05 -18.17 16 8 N -0.71 -11.12 5.35 -439.50 -2.35 -13.47 16 9 C 0.13 2.75 4.24 45.63 0.19 2.94 16 10 C -0.12 -2.35 7.59 30.88 0.23 -2.12 16 11 C -0.09 -2.38 1.11 -52.31 -0.06 -2.44 16 12 C -0.12 -3.73 7.59 30.89 0.23 -3.50 16 13 C 0.15 5.83 4.48 45.63 0.20 6.03 16 14 N -0.73 -37.50 5.40 -319.92 -1.73 -39.23 16 15 C -0.25 -14.08 9.97 84.03 0.84 -13.24 16 16 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 17 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 18 N -0.97 -59.92 13.06 21.65 0.28 -59.64 16 19 Si 0.97 46.84 29.55 68.60 2.03 48.87 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 22 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 23 C -0.14 -4.94 7.64 30.88 0.24 -4.70 16 24 C -0.12 -2.70 7.64 30.88 0.24 -2.47 16 25 H 0.10 0.94 7.84 -2.91 -0.02 0.91 16 26 H 0.10 0.97 8.06 -2.91 -0.02 0.95 16 27 H 0.10 1.29 8.06 -2.91 -0.02 1.27 16 28 H 0.08 0.58 7.79 -2.39 -0.02 0.56 16 29 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 31 H 0.05 0.89 8.10 -2.38 -0.02 0.87 16 32 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.42 3.41 8.73 -92.71 -0.81 2.60 16 35 H 0.09 2.39 7.47 -2.38 -0.02 2.37 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.11 1.68 8.12 -2.39 -0.02 1.66 16 38 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.07 2.42 8.12 -2.39 -0.02 2.40 16 40 H 0.07 2.78 8.10 -2.39 -0.02 2.76 16 41 H 0.37 20.50 7.92 -92.71 -0.73 19.77 16 42 H 0.25 15.07 8.31 -92.70 -0.77 14.30 16 43 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 46 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -72.82 379.36 2.55 -70.27 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: -0.59 Total: 30.37 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 4.96 Total: -19.00 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -3.80 Total: -112.34 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.05 Total: -18.17 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -72.82 2.55 -70.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121664068.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.299 kcal (2) G-P(sol) polarization free energy of solvation -72.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds