Wall clock time and date at job start Tue Mar 31 2020 07:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50710 * 109.46998 * 2 1 4 4 C 1.32993 * 119.99278 * 183.34683 * 3 2 1 5 5 C 1.50702 * 119.99280 * 184.12445 * 4 3 2 6 6 C 1.47100 * 120.00803 * 4.12573 * 4 3 2 7 7 O 1.21613 * 119.99547 * 353.58071 * 6 4 3 8 8 N 1.34776 * 119.99665 * 173.57737 * 6 4 3 9 9 C 1.46505 * 119.99248 * 180.02562 * 8 6 4 10 10 C 1.53001 * 109.46979 * 180.02562 * 9 8 6 11 11 C 1.50698 * 109.47559 * 179.97438 * 10 9 8 12 12 C 1.29447 * 117.69324 * 94.99338 * 11 10 9 13 13 C 1.50327 * 123.65236 * 181.14246 * 12 11 10 14 14 N 1.47128 * 109.10186 * 348.54442 * 13 12 11 15 15 C 1.36935 * 121.53481 * 223.16247 * 14 13 12 16 16 H 1.08000 * 120.00723 * 146.92155 * 15 14 13 17 17 C 1.38813 * 119.99905 * 326.91498 * 15 14 13 18 18 N 1.31628 * 119.99956 * 3.83505 * 17 15 14 19 19 Si 1.86801 * 120.00346 * 183.83897 * 17 15 14 20 20 H 1.48505 * 109.47221 * 89.99859 * 19 17 15 21 21 H 1.48493 * 109.47068 * 210.00138 * 19 17 15 22 22 H 1.48504 * 109.46683 * 329.99787 * 19 17 15 23 23 C 1.47338 * 117.08820 * 43.37521 * 14 13 12 24 24 C 1.49962 * 117.69311 * 275.02126 * 11 10 9 25 25 H 1.09001 * 109.46881 * 59.99459 * 1 2 3 26 26 H 1.08997 * 109.46692 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47049 * 299.99738 * 1 2 3 28 28 H 1.09004 * 109.47482 * 240.00560 * 2 1 3 29 29 H 1.08999 * 109.47318 * 120.00249 * 2 1 3 30 30 H 1.07999 * 119.99776 * 3.34964 * 3 2 1 31 31 H 1.09008 * 109.47425 * 270.00075 * 5 4 3 32 32 H 1.09006 * 109.47516 * 30.00157 * 5 4 3 33 33 H 1.09000 * 109.47261 * 149.99683 * 5 4 3 34 34 H 0.96989 * 120.00502 * 359.97438 * 8 6 4 35 35 H 1.08990 * 109.47476 * 59.99946 * 9 8 6 36 36 H 1.09004 * 109.47268 * 299.99566 * 9 8 6 37 37 H 1.09003 * 109.47384 * 59.99234 * 10 9 8 38 38 H 1.09007 * 109.46919 * 300.00457 * 10 9 8 39 39 H 1.08003 * 118.17810 * 0.86850 * 12 11 10 40 40 H 1.08998 * 109.51993 * 108.65038 * 13 12 11 41 41 H 1.08998 * 109.52395 * 228.83918 * 13 12 11 42 42 H 0.96995 * 119.99726 * 179.97438 * 18 17 15 43 43 H 1.08998 * 109.77805 * 178.39880 * 23 14 13 44 44 H 1.09006 * 109.77329 * 57.59801 * 23 14 13 45 45 H 1.08996 * 109.31636 * 281.28839 * 24 11 10 46 46 H 1.09000 * 109.31953 * 40.71338 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 3.3381 1.6645 -0.0672 5 6 3.8461 3.0802 0.0264 6 6 4.2863 0.5522 -0.2330 7 8 3.8892 -0.5966 -0.1915 8 7 5.5950 0.8062 -0.4309 9 6 6.5393 -0.3016 -0.5966 10 6 7.9487 0.2563 -0.8040 11 6 8.9202 -0.8831 -0.9738 12 6 9.2088 -1.2529 -2.1803 13 6 10.1401 -2.3879 -2.5034 14 7 10.8483 -2.7931 -1.2791 15 6 12.1901 -3.0663 -1.2851 16 1 12.7910 -2.8418 -0.4162 17 6 12.7782 -3.6322 -2.4080 18 7 12.0623 -3.8364 -3.4936 19 14 14.5854 -4.1039 -2.3786 20 1 14.7237 -5.5050 -1.9062 21 1 15.1504 -3.9848 -3.7467 22 1 15.3188 -3.1969 -1.4595 23 6 10.0498 -2.8970 -0.0453 24 6 9.4839 -1.5091 0.2669 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.3320 2.2412 0.0546 31 1 3.8988 3.5141 -0.9722 32 1 3.1679 3.6696 0.6434 33 1 4.8392 3.0808 0.4757 34 1 5.9116 1.7224 -0.4644 35 1 6.2526 -0.8969 -1.4634 36 1 6.5246 -0.9280 0.2954 37 1 8.2352 0.8515 0.0631 38 1 7.9638 0.8831 -1.6957 39 1 8.7519 -0.7191 -3.0004 40 1 9.5672 -3.2296 -2.8925 41 1 10.8648 -2.0632 -3.2500 42 1 12.4733 -4.2314 -4.2783 43 1 10.6829 -3.2307 0.7768 44 1 9.2331 -3.6037 -0.1930 45 1 10.2788 -0.8760 0.6610 46 1 8.6960 -1.6009 1.0145 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159488558.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:14 Heat of formation + Delta-G solvation = -2.395523 kcal Electronic energy + Delta-G solvation = -22880.766180 eV Core-core repulsion = 19577.913525 eV Total energy + Delta-G solvation = -3302.852655 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.04385 -37.89706 -35.99027 -35.15238 -33.69744 -32.48836 -31.24760 -29.78601 -28.63975 -27.22221 -25.51349 -23.66050 -22.76431 -22.42279 -21.60295 -20.90113 -19.36162 -17.58591 -16.50513 -16.22025 -15.72462 -15.56009 -15.05439 -14.65054 -14.30390 -14.09653 -13.93441 -13.81279 -13.55288 -13.37144 -13.15713 -12.90003 -12.78961 -12.57067 -12.14567 -11.94759 -11.83370 -11.60162 -11.45224 -11.35598 -11.30131 -10.94818 -10.83351 -10.76387 -10.31207 -10.15951 -9.85507 -9.70090 -9.48051 -9.35877 -8.93208 -8.61480 -7.87197 -6.56063 -5.78911 -3.26254 1.20799 2.89525 3.14978 3.29468 3.38657 3.44762 3.45833 4.44345 4.49534 4.56480 4.90196 5.02853 5.07375 5.15576 5.18537 5.24207 5.26303 5.32258 5.44315 5.45250 5.58382 5.60423 5.70394 5.81291 5.84495 5.93727 5.96452 6.06437 6.09857 6.16305 6.20202 6.26676 6.38663 6.44408 6.45852 6.61923 6.85564 6.96085 7.30929 7.41338 7.45628 7.49720 7.79599 7.95681 8.18554 8.48434 9.25246 9.83958 10.48036 11.30971 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.036916 B = 0.002457 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.306251 B =11395.451254 C =11630.598809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.097 4.097 3 C -0.066 4.066 4 C -0.198 4.198 5 C -0.115 4.115 6 C 0.546 3.454 7 O -0.537 6.537 8 N -0.727 5.727 9 C 0.125 3.875 10 C -0.091 4.091 11 C -0.144 4.144 12 C -0.147 4.147 13 C 0.195 3.805 14 N -0.597 5.597 15 C -0.249 4.249 16 H 0.065 0.935 17 C 0.006 3.994 18 N -0.909 5.909 19 Si 0.905 3.095 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.143 3.857 24 C -0.091 4.091 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.123 0.877 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.398 0.602 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.037 0.963 41 H 0.095 0.905 42 H 0.255 0.745 43 H 0.056 0.944 44 H 0.023 0.977 45 H 0.061 0.939 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.577 14.104 6.420 24.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.133 4.133 3 C -0.086 4.086 4 C -0.201 4.201 5 C -0.172 4.172 6 C 0.334 3.666 7 O -0.416 6.416 8 N -0.379 5.379 9 C 0.002 3.998 10 C -0.129 4.129 11 C -0.145 4.145 12 C -0.166 4.166 13 C 0.071 3.929 14 N -0.320 5.320 15 C -0.378 4.378 16 H 0.083 0.917 17 C -0.192 4.192 18 N -0.553 5.553 19 Si 0.734 3.266 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.205 1.205 23 C 0.016 3.984 24 C -0.130 4.130 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.141 0.859 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.233 0.767 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.054 0.946 41 H 0.113 0.887 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.041 0.959 45 H 0.079 0.921 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.745 13.193 6.281 23.768 hybrid contribution 1.075 0.353 -0.161 1.143 sum -17.670 13.546 6.120 23.091 Atomic orbital electron populations 1.21908 0.96172 1.01894 1.01373 1.20842 0.94531 0.93481 1.04462 1.23721 0.94494 0.98887 0.91493 1.21499 0.94515 0.95339 1.08777 1.20768 1.01657 0.92318 1.02408 1.18417 0.82308 0.88956 0.76881 1.90794 1.77823 1.22404 1.50610 1.46061 1.07555 1.10496 1.73795 1.21426 0.87397 0.88716 1.02294 1.20906 0.92638 0.97490 1.01876 1.20207 0.99938 0.98638 0.95722 1.23199 0.98642 0.99143 0.95637 1.19814 0.92487 0.90626 0.90000 1.44081 1.05092 1.78956 1.03879 1.19120 0.83607 1.33972 1.01116 0.91706 1.25308 0.98409 0.98299 0.97202 1.69932 1.35262 1.47270 1.02853 0.86257 0.84742 0.78724 0.76857 1.21298 1.21691 1.20478 1.20977 0.94196 0.92652 0.90562 1.20753 0.98635 0.99228 0.94381 0.92912 0.92464 0.92936 0.89180 0.89547 0.85892 0.91150 0.91222 0.91585 0.76733 0.91342 0.91314 0.91589 0.91627 0.89228 0.94584 0.88721 0.93518 0.92578 0.95893 0.92083 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.85 37.16 0.37 -0.80 16 2 C -0.10 -0.96 4.52 -27.88 -0.13 -1.09 16 3 C -0.07 -0.57 9.25 -36.12 -0.33 -0.91 16 4 C -0.20 -1.86 6.00 -102.85 -0.62 -2.48 16 5 C -0.11 -0.72 9.48 36.01 0.34 -0.37 16 6 C 0.55 6.89 7.70 -12.67 -0.10 6.79 16 7 O -0.54 -8.59 13.11 5.27 0.07 -8.52 16 8 N -0.73 -8.20 5.48 -61.49 -0.34 -8.53 16 9 C 0.12 1.68 5.66 -4.04 -0.02 1.65 16 10 C -0.09 -1.22 5.32 -27.88 -0.15 -1.37 16 11 C -0.14 -2.54 5.11 -100.99 -0.52 -3.06 16 12 C -0.15 -2.90 9.47 -35.78 -0.34 -3.24 16 13 C 0.20 4.79 5.18 -5.03 -0.03 4.77 16 14 N -0.60 -15.36 3.00 -173.57 -0.52 -15.88 16 15 C -0.25 -6.92 9.66 -15.06 -0.15 -7.06 16 16 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 17 C 0.01 0.17 5.34 -17.43 -0.09 0.08 16 18 N -0.91 -26.41 10.77 55.49 0.60 -25.81 16 19 Si 0.90 21.80 29.56 -169.99 -5.02 16.77 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.14 3.08 6.57 -3.53 -0.02 3.06 16 24 C -0.09 -1.65 5.94 -28.19 -0.17 -1.81 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 1.09 6.93 -51.93 -0.36 0.73 16 29 H 0.09 0.99 7.51 -51.93 -0.39 0.60 16 30 H 0.12 0.75 7.99 -52.49 -0.42 0.33 16 31 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 32 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 33 H 0.07 0.38 6.97 -51.93 -0.36 0.01 16 34 H 0.40 3.39 6.74 -40.82 -0.28 3.11 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 37 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 38 H 0.07 0.82 7.78 -51.93 -0.40 0.41 16 39 H 0.09 1.58 7.73 -52.48 -0.41 1.17 16 40 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.09 2.57 6.49 -51.93 -0.34 2.23 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 46 H 0.05 0.82 8.08 -51.93 -0.42 0.40 16 LS Contribution 368.01 15.07 5.55 5.55 Total: -1.00 -31.43 368.01 -9.59 -41.02 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.97 Total: 1.23 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -1.95 Total: -5.83 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -0.26 Total: -50.22 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.07 Total: -8.52 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.43 -9.59 -41.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159488558.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.623 kcal (2) G-P(sol) polarization free energy of solvation -31.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds