Wall clock time and date at job start Tue Mar 31 2020 07:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46866 * 123.37059 * 3 2 1 5 5 C 1.50702 * 109.47245 * 299.99874 * 4 3 2 6 6 O 1.21283 * 120.00262 * 240.00295 * 5 4 3 7 7 N 1.34777 * 119.99928 * 59.72201 * 5 4 3 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 C 1.52997 * 109.47555 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47273 * 179.97438 * 9 8 7 11 11 N 1.46506 * 109.47033 * 180.02562 * 10 9 8 12 12 C 1.36930 * 120.00034 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99872 * 359.97438 * 12 11 10 14 14 C 1.38811 * 120.00052 * 180.02562 * 12 11 10 15 15 N 1.31617 * 120.00067 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00117 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46968 * 59.99596 * 16 14 12 18 18 H 1.48494 * 109.47455 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47179 * 299.99993 * 16 14 12 20 20 C 1.52996 * 109.47253 * 59.99686 * 4 3 2 21 21 C 1.53000 * 109.47253 * 179.97438 * 20 4 3 22 22 C 1.52996 * 109.47166 * 300.00041 * 21 20 4 23 23 C 1.53002 * 109.47255 * 60.00105 * 22 21 20 24 24 C 1.52996 * 109.47166 * 179.97438 * 4 3 2 25 25 H 4.44649 * 5.63264 * 180.02562 * 4 1 2 26 26 H 1.08996 * 109.47162 * 3.37607 * 3 2 1 27 27 H 1.08994 * 109.47016 * 243.36903 * 3 2 1 28 28 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 29 29 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 30 30 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 31 31 H 1.08998 * 109.47382 * 300.00439 * 9 8 7 32 32 H 1.09005 * 109.46800 * 60.00640 * 9 8 7 33 33 H 1.08992 * 109.47143 * 300.00104 * 10 9 8 34 34 H 1.08997 * 109.46799 * 60.00311 * 10 9 8 35 35 H 0.97005 * 119.99806 * 0.02562 * 11 10 9 36 36 H 0.96998 * 120.00171 * 180.02562 * 15 14 12 37 37 H 1.09001 * 109.47551 * 299.99874 * 20 4 3 38 38 H 1.09003 * 109.46851 * 60.00175 * 20 4 3 39 39 H 1.09004 * 109.47131 * 180.02562 * 21 20 4 40 40 H 1.09003 * 109.47049 * 60.00296 * 21 20 4 41 41 H 1.09003 * 109.47345 * 300.00074 * 22 21 20 42 42 H 1.09000 * 109.47665 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.47738 * 180.02562 * 23 22 21 44 44 H 1.09003 * 109.46969 * 59.99739 * 23 22 21 45 45 H 1.08994 * 109.47089 * 300.00072 * 24 4 3 46 46 H 1.09004 * 109.47066 * 59.99996 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.7943 -1.2047 5 6 2.6536 0.1573 -2.4748 6 8 3.4419 -0.2556 -3.2989 7 7 1.3286 0.0412 -2.6924 8 6 0.8405 -0.5835 -3.9243 9 6 -0.6895 -0.5888 -3.9221 10 6 -1.1991 -1.2407 -5.2090 11 7 -2.6642 -1.2451 -5.2071 12 6 -3.3486 -1.7823 -6.2645 13 1 -2.8084 -2.2023 -7.1000 14 6 -4.7367 -1.7861 -6.2629 15 7 -5.3950 -1.2737 -5.2449 16 14 -5.6704 -2.5182 -7.7057 17 1 -5.3079 -3.9507 -7.8543 18 1 -7.1304 -2.4004 -7.4617 19 1 -5.3150 -1.7863 -8.9481 20 6 2.6449 2.2341 -1.1199 21 6 3.1550 3.0279 -2.3243 22 6 4.6850 3.0287 -2.3237 23 6 5.1958 1.5889 -2.4085 24 6 4.6856 0.7956 -1.2044 25 1 -1.0501 0.0000 0.0004 26 1 3.0098 -1.0250 -0.0605 27 1 3.0091 0.4614 0.9186 28 1 0.6980 0.3714 -2.0334 29 1 1.2003 -0.0196 -4.7849 30 1 1.2076 -1.6082 -3.9822 31 1 -1.0497 -1.1524 -3.0615 32 1 -1.0562 0.4361 -3.8646 33 1 -0.8390 -0.6766 -6.0693 34 1 -0.8324 -2.2655 -5.2670 35 1 -3.1494 -0.8675 -4.4568 36 1 -6.3650 -1.2767 -5.2436 37 1 1.5549 2.2336 -1.1199 38 1 3.0081 2.6949 -0.2013 39 1 2.7915 4.0538 -2.2637 40 1 2.7922 2.5672 -3.2432 41 1 5.0478 3.4893 -1.4048 42 1 5.0485 3.5938 -3.1819 43 1 6.2858 1.5893 -2.4076 44 1 4.8330 1.1283 -3.3274 45 1 5.0483 1.2566 -0.2858 46 1 5.0498 -0.2300 -1.2646 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177217864.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:32 Heat of formation + Delta-G solvation = 0.906303 kcal Electronic energy + Delta-G solvation = -23767.636511 eV Core-core repulsion = 20464.927034 eV Total energy + Delta-G solvation = -3302.709477 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.06667 -37.60059 -36.04976 -35.15178 -34.03026 -31.92464 -31.73846 -30.87972 -29.41559 -27.13978 -25.49043 -23.37305 -22.94962 -22.08935 -21.16438 -20.98768 -19.32054 -18.26731 -17.06709 -16.55521 -16.24979 -15.62992 -15.35148 -14.76070 -14.68857 -14.50491 -14.20176 -14.04210 -13.85528 -13.33707 -13.26096 -13.04301 -12.67376 -12.44654 -12.39067 -12.21347 -12.11824 -11.61855 -11.27752 -10.96840 -10.94636 -10.85590 -10.75904 -10.73656 -10.57876 -10.48005 -10.18600 -10.15612 -10.10328 -9.72795 -9.45856 -8.90201 -8.86900 -6.93328 -5.77101 -3.05860 2.42579 2.59757 2.73905 3.22176 3.44741 3.48718 3.50051 4.01102 4.37429 4.40417 4.50566 4.59646 4.77548 4.92843 4.98962 5.08469 5.18522 5.20631 5.28599 5.29576 5.33691 5.39645 5.44374 5.57850 5.61391 5.66179 5.69315 5.76709 5.81657 5.94640 5.99547 6.02254 6.07128 6.08974 6.10058 6.20686 6.32603 6.38311 6.61044 6.79958 6.84414 7.33011 7.57863 7.69866 8.28240 8.41991 9.53018 10.10187 10.45157 11.45938 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.025876 B = 0.002920 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.817419 B = 9587.883665 C =10009.859954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.194 4.194 3 C -0.003 4.003 4 C -0.072 4.072 5 C 0.523 3.477 6 O -0.538 6.538 7 N -0.726 5.726 8 C 0.120 3.880 9 C -0.137 4.137 10 C 0.157 3.843 11 N -0.733 5.733 12 C -0.240 4.240 13 H 0.070 0.930 14 C -0.014 4.014 15 N -0.935 5.935 16 Si 0.909 3.091 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.286 1.286 20 C -0.107 4.107 21 C -0.124 4.124 22 C -0.118 4.118 23 C -0.134 4.134 24 C -0.091 4.091 25 H 0.223 0.777 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.401 0.599 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.021 0.979 34 H 0.021 0.979 35 H 0.383 0.617 36 H 0.256 0.744 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.093 0.907 45 H 0.068 0.932 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.172 8.174 13.883 25.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.194 4.194 3 C -0.039 4.039 4 C -0.075 4.075 5 C 0.309 3.691 6 O -0.416 6.416 7 N -0.381 5.381 8 C -0.004 4.004 9 C -0.175 4.175 10 C 0.029 3.971 11 N -0.378 5.378 12 C -0.372 4.372 13 H 0.088 0.912 14 C -0.210 4.210 15 N -0.584 5.584 16 Si 0.739 3.261 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.212 1.212 20 C -0.144 4.144 21 C -0.162 4.162 22 C -0.155 4.155 23 C -0.171 4.171 24 C -0.129 4.129 25 H 0.239 0.761 26 H 0.111 0.889 27 H 0.117 0.883 28 H 0.240 0.760 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.112 0.888 45 H 0.086 0.914 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 20.677 7.794 13.117 25.697 hybrid contribution -1.384 -0.150 -0.186 1.405 sum 19.293 7.643 12.931 24.451 Atomic orbital electron populations 1.25140 0.96161 1.00033 0.99559 1.22879 0.94396 1.01325 1.00811 1.18808 0.85160 1.01725 0.98254 1.20910 0.97803 0.96255 0.92548 1.20309 0.82374 0.78698 0.87768 1.90615 1.55083 1.48950 1.46931 1.46559 1.07273 1.61351 1.22922 1.21346 0.94478 0.98222 0.86354 1.21927 0.92923 1.02023 1.00602 1.20518 0.86269 0.96945 0.93397 1.42326 0.99343 1.72680 1.23403 1.19207 0.89107 1.31185 0.97651 0.91157 1.24744 0.96357 1.01762 0.98157 1.69646 1.06882 1.50990 1.30877 0.86243 0.78903 0.78948 0.81961 1.21231 1.21662 1.21221 1.21633 1.00721 0.92564 0.99523 1.21579 0.96222 1.00096 0.98267 1.21538 0.95232 0.97271 1.01505 1.21791 0.99948 0.94911 1.00496 1.21342 0.91112 1.01451 0.98971 0.76063 0.88933 0.88314 0.75953 0.91516 0.91490 0.91414 0.91478 0.96082 0.96074 0.78326 0.93466 0.91409 0.90647 0.91605 0.91833 0.92279 0.92129 0.92250 0.88842 0.91366 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.82 17.62 29.55 0.52 -1.30 16 2 C -0.19 -1.87 9.75 -37.12 -0.36 -2.23 16 3 C 0.00 -0.02 4.78 -29.52 -0.14 -0.16 16 4 C -0.07 -0.68 0.50 -155.66 -0.08 -0.75 16 5 C 0.52 6.77 4.93 -10.98 -0.05 6.72 16 6 O -0.54 -8.56 13.66 5.55 0.08 -8.49 16 7 N -0.73 -9.38 4.90 -60.29 -0.30 -9.68 16 8 C 0.12 1.75 5.67 -4.04 -0.02 1.73 16 9 C -0.14 -2.19 5.44 -26.73 -0.15 -2.34 16 10 C 0.16 3.21 6.26 -4.04 -0.03 3.18 16 11 N -0.73 -18.87 5.60 -59.91 -0.34 -19.21 16 12 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 13 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 14 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 15 N -0.94 -28.40 13.06 55.49 0.72 -27.67 16 16 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 C -0.11 -0.91 4.38 -26.73 -0.12 -1.02 16 21 C -0.12 -1.14 5.70 -26.73 -0.15 -1.29 16 22 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 23 C -0.13 -1.30 5.63 -26.75 -0.15 -1.45 16 24 C -0.09 -0.79 4.37 -26.76 -0.12 -0.91 16 25 H 0.22 1.67 7.80 -54.09 -0.42 1.25 16 26 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.40 4.70 4.10 -40.82 -0.17 4.53 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.38 10.21 7.67 -40.82 -0.31 9.90 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.07 0.61 6.68 -51.93 -0.35 0.26 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.72 7.22 -51.93 -0.37 0.35 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 1.18 5.51 -51.93 -0.29 0.90 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 361.77 15.07 5.45 5.45 Total: -1.00 -32.60 361.77 -8.45 -41.04 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -7.80 Total: 9.48 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -1.25 Total: -8.51 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.09 Total: -56.56 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.08 Total: -8.49 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.60 -8.45 -41.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177217864.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.950 kcal (2) G-P(sol) polarization free energy of solvation -32.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds