Wall clock time and date at job start Tue Mar 31 2020 07:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47187 * 2 1 4 4 C 1.32991 * 119.99861 * 174.80999 * 3 2 1 5 5 C 1.50709 * 120.00022 * 185.63903 * 4 3 2 6 6 C 1.47108 * 120.00227 * 5.64101 * 4 3 2 7 7 O 1.21604 * 119.99805 * 5.80452 * 6 4 3 8 8 N 1.34782 * 119.99895 * 185.80927 * 6 4 3 9 9 C 1.46496 * 119.99841 * 180.02562 * 8 6 4 10 10 H 1.09006 * 112.88686 * 25.32482 * 9 8 6 11 11 C 1.53950 * 113.66195 * 253.98448 * 9 8 6 12 12 C 1.54140 * 87.22708 * 220.82363 * 11 9 8 13 13 H 1.08995 * 113.57963 * 270.17961 * 12 11 9 14 14 N 1.46502 * 113.80532 * 139.15829 * 12 11 9 15 15 C 1.36943 * 119.99937 * 107.70504 * 14 12 11 16 16 H 1.08002 * 119.99832 * 359.97438 * 15 14 12 17 17 C 1.38810 * 119.99978 * 180.02562 * 15 14 12 18 18 N 1.31619 * 119.99609 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99966 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47408 * 89.99865 * 19 17 15 21 21 H 1.48506 * 109.46766 * 209.99745 * 19 17 15 22 22 H 1.48494 * 109.46985 * 329.99383 * 19 17 15 23 23 C 1.52905 * 113.66546 * 156.67319 * 9 8 6 24 24 C 1.52910 * 121.13309 * 13.65111 * 23 9 8 25 25 C 1.53951 * 86.78197 * 209.37534 * 24 23 9 26 26 C 1.52904 * 121.14208 * 265.08866 * 23 9 8 27 27 H 1.08994 * 109.47185 * 59.99871 * 1 2 3 28 28 H 1.09001 * 109.47059 * 299.99911 * 1 2 3 29 29 H 1.09003 * 109.47323 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47499 * 120.00405 * 2 1 3 31 31 H 1.09001 * 109.47059 * 240.00089 * 2 1 3 32 32 H 1.07997 * 119.99932 * 354.80899 * 3 2 1 33 33 H 1.09004 * 109.46705 * 90.00210 * 5 4 3 34 34 H 1.08997 * 109.46977 * 209.99466 * 5 4 3 35 35 H 1.09000 * 109.46882 * 329.99888 * 5 4 3 36 36 H 0.96998 * 119.99817 * 359.97438 * 8 6 4 37 37 H 1.09005 * 113.57521 * 335.39889 * 11 9 8 38 38 H 1.09002 * 113.58589 * 106.18660 * 11 9 8 39 39 H 0.97000 * 120.00333 * 287.71234 * 14 12 11 40 40 H 0.97005 * 119.99435 * 180.02562 * 18 17 15 41 41 H 1.08993 * 113.66408 * 323.84879 * 24 23 9 42 42 H 1.09000 * 113.65954 * 94.90980 * 24 23 9 43 43 H 1.08999 * 113.58804 * 270.13234 * 25 24 23 44 44 H 1.09001 * 113.64875 * 139.34649 * 25 24 23 45 45 H 1.09000 * 113.66331 * 265.08982 * 26 23 9 46 46 H 1.09006 * 113.65607 * 36.14311 * 26 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 3.3354 1.6653 0.1042 5 6 3.8280 3.0839 0.2322 6 6 4.2960 0.5512 0.0944 7 8 3.9098 -0.5828 -0.1144 8 7 5.6042 0.7874 0.3171 9 6 6.5608 -0.3220 0.3068 10 1 6.2241 -1.1667 -0.2943 11 6 7.0598 -0.7206 1.7076 12 6 8.4600 -0.8770 1.0824 13 1 8.6576 -1.8785 0.7005 14 7 9.5440 -0.3640 1.9240 15 6 10.3944 -1.2349 2.5514 16 1 10.2657 -2.2999 2.4262 17 6 11.4211 -0.7489 3.3492 18 7 12.2381 -1.5860 3.9526 19 14 11.6424 1.0931 3.5675 20 1 10.8509 1.5516 4.7373 21 1 13.0788 1.3959 3.7922 22 1 11.1735 1.7960 2.3464 23 6 7.9974 0.1090 0.0091 24 6 8.4073 1.5813 0.0584 25 6 9.4642 1.2329 -1.0054 26 6 8.5613 0.0538 -1.4111 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.3342 2.2404 -0.0846 33 1 3.8778 3.3574 1.2862 34 1 4.8203 3.1653 -0.2115 35 1 3.1423 3.7547 -0.2854 36 1 5.9122 1.6920 0.4834 37 1 6.9962 0.0854 2.4388 38 1 6.6365 -1.6569 2.0713 39 1 9.6593 0.5925 2.0368 40 1 12.9554 -1.2464 4.5104 41 1 7.6352 2.2626 -0.2988 42 1 8.8330 1.8851 1.0148 43 1 10.4213 0.9245 -0.5847 44 1 9.5683 1.9899 -1.7827 45 1 9.1099 -0.8626 -1.6286 46 1 7.8322 0.3058 -2.1813 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202582986.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:17 Heat of formation + Delta-G solvation = 26.720165 kcal Electronic energy + Delta-G solvation = -24057.808684 eV Core-core repulsion = 20756.218580 eV Total energy + Delta-G solvation = -3301.590104 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.75676 -39.35066 -35.66944 -34.91093 -34.32367 -32.97112 -31.84450 -30.37252 -27.15611 -25.65363 -25.16452 -24.25574 -23.27696 -22.18501 -21.05817 -20.54912 -19.41013 -18.37063 -17.05841 -16.46394 -16.31571 -15.33021 -15.07464 -14.89178 -14.71366 -14.23472 -14.11379 -13.81828 -13.34049 -13.24065 -12.81416 -12.71241 -12.69912 -12.56369 -12.21048 -11.98924 -11.81345 -11.78748 -11.53740 -11.40672 -11.25208 -11.06210 -10.86901 -10.81613 -10.26269 -10.01536 -9.98264 -9.88746 -9.57147 -9.46009 -9.18956 -8.90029 -8.62726 -7.29524 -5.81064 -3.16625 1.29165 3.26031 3.31782 3.32780 3.34885 3.41429 4.52225 4.54156 4.64143 4.67830 4.79604 4.92253 4.97506 5.09227 5.09352 5.12291 5.17253 5.24948 5.33756 5.36217 5.49329 5.52477 5.64118 5.65950 5.78519 5.83298 5.85839 5.86608 5.93757 5.98931 6.03557 6.14095 6.17669 6.23758 6.27135 6.29413 6.45068 6.52359 6.56813 6.69801 6.78871 6.95777 7.65938 7.96085 8.32376 8.38809 9.16225 9.88395 10.08251 11.37219 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.022388 B = 0.003704 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.362840 B = 7557.533214 C = 7755.104142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.095 4.095 3 C -0.069 4.069 4 C -0.197 4.197 5 C -0.115 4.115 6 C 0.548 3.452 7 O -0.541 6.541 8 N -0.709 5.709 9 C 0.133 3.867 10 H 0.112 0.888 11 C -0.173 4.173 12 C 0.200 3.800 13 H 0.090 0.910 14 N -0.730 5.730 15 C -0.247 4.247 16 H 0.092 0.908 17 C 0.007 3.993 18 N -0.932 5.932 19 Si 0.880 3.120 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.276 1.276 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.133 4.133 26 C -0.124 4.124 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.122 0.878 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.398 0.602 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.363 0.637 40 H 0.260 0.740 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.701 9.975 -10.636 23.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.132 4.132 3 C -0.088 4.088 4 C -0.200 4.200 5 C -0.172 4.172 6 C 0.337 3.663 7 O -0.421 6.421 8 N -0.360 5.360 9 C 0.028 3.972 10 H 0.129 0.871 11 C -0.216 4.216 12 C 0.087 3.913 13 H 0.108 0.892 14 N -0.371 5.371 15 C -0.376 4.376 16 H 0.110 0.890 17 C -0.189 4.189 18 N -0.579 5.579 19 Si 0.710 3.290 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.202 1.202 23 C -0.126 4.126 24 C -0.157 4.157 25 C -0.170 4.170 26 C -0.161 4.161 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.140 0.860 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.233 0.767 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.197 0.803 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.772 8.954 -10.673 23.377 hybrid contribution 0.399 1.909 0.430 1.997 sum -18.373 10.863 -10.243 23.675 Atomic orbital electron populations 1.21903 0.96230 1.01816 1.01352 1.20803 0.94432 0.93539 1.04408 1.23686 0.94477 0.98833 0.91820 1.21536 0.94541 0.95356 1.08559 1.20775 1.01627 0.92305 1.02471 1.18411 0.82557 0.88639 0.76713 1.90760 1.78514 1.23318 1.49497 1.45949 1.06940 1.11353 1.71725 1.22243 0.86389 0.89785 0.98811 0.87060 1.24262 0.99918 1.01529 0.95856 1.21074 0.86488 0.95162 0.88550 0.89211 1.42686 1.33326 1.04995 1.56052 1.19142 1.05996 0.91001 1.21505 0.89024 1.24670 0.97771 0.96887 0.99611 1.69699 1.19822 1.32868 1.35532 0.86623 0.77296 0.87128 0.77922 1.21081 1.21671 1.20211 1.23631 0.94452 0.97443 0.97097 1.22459 0.98458 0.94730 1.00042 1.22753 0.98455 0.97828 0.97965 1.22686 0.98584 0.99230 0.95641 0.92939 0.92961 0.92517 0.89846 0.89063 0.86018 0.90973 0.91813 0.91286 0.76653 0.90379 0.91645 0.80252 0.93011 0.90831 0.91138 0.89326 0.92256 0.91125 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.85 37.16 0.37 -0.88 16 2 C -0.10 -1.00 4.51 -27.88 -0.13 -1.13 16 3 C -0.07 -0.65 9.25 -36.13 -0.33 -0.98 16 4 C -0.20 -2.07 6.00 -102.84 -0.62 -2.68 16 5 C -0.11 -0.88 9.49 36.01 0.34 -0.54 16 6 C 0.55 7.45 7.67 -12.66 -0.10 7.35 16 7 O -0.54 -8.89 12.82 5.27 0.07 -8.82 16 8 N -0.71 -9.11 5.20 -54.55 -0.28 -9.40 16 9 C 0.13 1.95 4.09 -67.49 -0.28 1.68 16 10 H 0.11 1.74 7.50 -51.93 -0.39 1.35 16 11 C -0.17 -2.95 7.70 -25.65 -0.20 -3.15 16 12 C 0.20 3.71 4.36 -67.38 -0.29 3.42 16 13 H 0.09 1.72 8.10 -51.93 -0.42 1.30 16 14 N -0.73 -16.51 5.13 -52.89 -0.27 -16.78 16 15 C -0.25 -6.77 10.45 -15.06 -0.16 -6.93 16 16 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 17 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 18 N -0.93 -28.93 13.97 55.49 0.78 -28.15 16 19 Si 0.88 21.58 27.74 -169.99 -4.71 16.86 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 22 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 23 C -0.12 -1.85 1.07 -154.71 -0.16 -2.02 16 24 C -0.12 -1.66 6.78 -26.28 -0.18 -1.84 16 25 C -0.13 -1.88 8.08 -25.75 -0.21 -2.08 16 26 C -0.12 -1.71 7.84 -26.28 -0.21 -1.91 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 1.04 7.41 -51.93 -0.38 0.65 16 31 H 0.09 1.11 7.08 -51.93 -0.37 0.74 16 32 H 0.12 0.85 7.98 -52.49 -0.42 0.43 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.46 6.94 -51.93 -0.36 0.10 16 35 H 0.07 0.42 8.06 -51.93 -0.42 0.00 16 36 H 0.40 4.39 5.22 -40.82 -0.21 4.17 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.36 8.04 3.78 -40.82 -0.15 7.89 16 40 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.07 0.84 6.99 -51.93 -0.36 0.47 16 42 H 0.07 1.11 6.42 -51.93 -0.33 0.77 16 43 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -31.27 361.53 -8.87 -40.14 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -7.64 Total: 12.30 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -2.24 Total: -11.60 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: 0.22 Total: -54.33 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.07 Total: -8.82 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.86 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.27 -8.87 -40.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202582986.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.857 kcal (2) G-P(sol) polarization free energy of solvation -31.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds