Wall clock time and date at job start Tue Mar 31 2020 08:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32863 * 1 3 3 C 1.47120 * 120.00176 * 2 1 4 4 C 1.50703 * 119.99684 * 0.02562 * 3 2 1 5 5 C 1.32863 * 120.00176 * 180.02562 * 3 2 1 6 6 C 1.50706 * 120.00150 * 173.81410 * 5 3 2 7 7 C 1.50697 * 109.46987 * 234.36484 * 6 5 3 8 8 O 1.21284 * 120.00093 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99861 * 180.02562 * 7 6 5 10 10 C 1.46925 * 120.63090 * 359.71319 * 9 7 6 11 11 C 1.53628 * 108.54286 * 126.37135 * 10 9 7 12 12 C 1.53039 * 109.23846 * 54.85642 * 11 10 9 13 13 C 1.53004 * 109.45817 * 178.49300 * 12 11 10 14 14 N 1.46498 * 109.46972 * 295.06794 * 13 12 11 15 15 C 1.36942 * 120.00208 * 180.02562 * 14 13 12 16 16 H 1.07993 * 119.99955 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99887 * 180.02562 * 15 14 13 18 18 N 1.31619 * 119.99666 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00207 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47128 * 90.00137 * 19 17 15 21 21 H 1.48497 * 109.47160 * 209.99678 * 19 17 15 22 22 H 1.48498 * 109.47065 * 329.99753 * 19 17 15 23 23 C 1.53037 * 109.53911 * 298.50938 * 12 11 10 24 24 C 1.46925 * 120.63134 * 179.97438 * 9 7 6 25 25 H 1.07996 * 119.99975 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99836 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.00278 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.46995 * 265.10551 * 4 3 2 29 29 H 1.09001 * 109.47278 * 25.10858 * 4 3 2 30 30 H 1.09002 * 109.46826 * 145.10476 * 4 3 2 31 31 H 1.07998 * 120.00262 * 354.08459 * 5 3 2 32 32 H 1.09005 * 109.46690 * 354.35959 * 6 5 3 33 33 H 1.09002 * 109.47251 * 114.36121 * 6 5 3 34 34 H 1.08997 * 109.59136 * 246.20539 * 10 9 7 35 35 H 1.09000 * 109.58734 * 6.63155 * 10 9 7 36 36 H 1.09004 * 109.63083 * 294.86696 * 11 10 9 37 37 H 1.08999 * 109.46165 * 174.74244 * 11 10 9 38 38 H 1.09001 * 109.45361 * 58.53008 * 12 11 10 39 39 H 1.08994 * 109.47385 * 55.06501 * 13 12 11 40 40 H 1.08999 * 109.47383 * 175.07165 * 13 12 11 41 41 H 0.97009 * 119.99981 * 0.02562 * 14 13 12 42 42 H 0.96998 * 120.00268 * 180.02562 * 18 17 15 43 43 H 1.08997 * 109.49980 * 301.41349 * 23 12 11 44 44 H 1.09006 * 109.52454 * 181.33710 * 23 12 11 45 45 H 1.09000 * 109.58838 * 353.36781 * 24 9 7 46 46 H 1.08993 * 109.59122 * 113.65319 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3286 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3107 2.5792 0.0006 5 6 3.3929 1.2741 -0.0005 6 6 4.1464 2.5716 -0.1412 7 6 5.1140 2.4684 -1.2918 8 8 5.1851 1.4421 -1.9342 9 7 5.9011 3.5163 -1.6065 10 6 5.8227 4.7679 -0.8410 11 6 7.2333 5.1310 -0.3527 12 6 8.1832 5.1862 -1.5514 13 6 9.5818 5.5844 -1.0755 14 7 9.5466 6.9490 -0.5437 15 6 10.6901 7.5238 -0.0566 16 1 11.6178 6.9710 -0.0641 17 6 10.6565 8.8167 0.4477 18 7 11.7555 9.3689 0.9163 19 14 9.0518 9.7726 0.4613 20 1 8.3369 9.5216 1.7384 21 1 9.3389 11.2238 0.3317 22 1 8.2038 9.3324 -0.6755 23 6 8.2445 3.8108 -2.2196 24 6 6.8497 3.4307 -2.7252 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8687 -0.9353 -0.0004 28 1 1.2046 2.9379 -1.0232 29 1 0.3233 2.4285 0.4370 30 1 1.8593 3.3151 0.5885 31 1 3.9330 0.3438 0.0955 32 1 3.4422 3.3820 -0.3301 33 1 4.6956 2.7744 0.7783 34 1 5.4380 5.5632 -1.4792 35 1 5.1620 4.6318 0.0152 36 1 7.5819 4.3772 0.3533 37 1 7.2087 6.1045 0.1371 38 1 7.8204 5.9226 -2.2685 39 1 9.9087 4.8984 -0.2941 40 1 10.2774 5.5389 -1.9134 41 1 8.7132 7.4455 -0.5367 42 1 11.7321 10.2722 1.2691 43 1 8.5835 3.0696 -1.4961 44 1 8.9392 3.8442 -3.0589 45 1 6.8668 2.4120 -3.1127 46 1 6.5458 4.1171 -3.5154 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205930331.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:01 Heat of formation + Delta-G solvation = 0.526932 kcal Electronic energy + Delta-G solvation = -23144.916151 eV Core-core repulsion = 19842.190224 eV Total energy + Delta-G solvation = -3302.725928 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.37138 -38.06464 -37.03650 -35.11486 -33.17748 -32.61118 -31.26035 -30.69565 -29.09173 -27.37891 -26.45370 -23.69785 -23.37170 -21.92303 -21.09805 -20.26122 -18.99816 -18.15452 -17.72091 -17.23026 -16.39278 -15.92789 -15.33210 -14.75641 -14.55371 -14.34809 -14.13483 -14.03696 -13.89660 -13.50156 -13.25819 -13.08827 -12.98943 -12.55741 -12.48041 -12.40682 -12.00294 -11.85938 -11.74035 -11.41474 -11.26370 -11.13006 -10.94350 -10.79753 -10.58634 -10.46565 -10.26897 -10.12554 -9.86695 -9.60424 -8.92025 -8.72489 -8.48220 -7.24877 -5.78779 -3.14211 1.05731 2.50816 2.66967 2.99333 3.33299 3.34710 3.41960 4.35457 4.39900 4.56052 4.57536 4.70319 4.86022 4.88964 4.93254 4.98916 5.00455 5.09236 5.15262 5.23439 5.28900 5.37626 5.39453 5.45469 5.53482 5.55096 5.69111 5.69662 5.70204 5.81810 5.88366 6.03901 6.07127 6.10466 6.19815 6.26756 6.32043 6.39994 6.47362 6.65705 6.67265 6.77979 7.28454 7.97934 8.05499 8.40304 9.19407 9.91557 10.11577 11.39797 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.024647 B = 0.002871 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.752063 B = 9751.781024 C =10531.153003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.113 4.113 3 C -0.112 4.112 4 C -0.124 4.124 5 C -0.116 4.116 6 C -0.118 4.118 7 C 0.520 3.480 8 O -0.544 6.544 9 N -0.610 5.610 10 C 0.104 3.896 11 C -0.127 4.127 12 C -0.098 4.098 13 C 0.162 3.838 14 N -0.755 5.755 15 C -0.243 4.243 16 H 0.089 0.911 17 C 0.002 3.998 18 N -0.935 5.935 19 Si 0.885 3.115 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.277 1.277 23 C -0.125 4.125 24 C 0.112 3.888 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.114 0.886 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.360 0.640 42 H 0.259 0.741 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.496 -15.082 -3.159 26.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.131 4.131 3 C -0.113 4.113 4 C -0.180 4.180 5 C -0.134 4.134 6 C -0.158 4.158 7 C 0.308 3.692 8 O -0.421 6.421 9 N -0.344 5.344 10 C -0.019 4.019 11 C -0.166 4.166 12 C -0.117 4.117 13 C 0.035 3.965 14 N -0.401 5.401 15 C -0.373 4.373 16 H 0.107 0.893 17 C -0.193 4.193 18 N -0.583 5.583 19 Si 0.715 3.285 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.164 4.164 24 C -0.010 4.010 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.132 0.868 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.136 0.864 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.193 0.807 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.108 0.892 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.209 -15.589 -3.440 26.546 hybrid contribution -0.915 0.923 0.121 1.305 sum -22.124 -14.665 -3.319 26.750 Atomic orbital electron populations 1.24401 0.95706 1.02005 1.00669 1.21858 0.95299 0.96079 0.99884 1.20545 0.93877 0.94386 1.02445 1.20900 1.00287 0.94568 1.02248 1.22798 0.93865 0.97789 0.98950 1.20847 0.98226 0.98416 0.98277 1.20481 0.80831 0.82820 0.85062 1.90682 1.68774 1.29396 1.53297 1.48172 1.39019 1.13976 1.33206 1.21975 0.98655 0.85578 0.95708 1.22027 0.93304 1.02922 0.98310 1.21360 0.97060 0.96404 0.96870 1.20650 0.92771 0.86884 0.96187 1.42727 1.08944 1.12634 1.75813 1.19070 0.88723 0.97186 1.32331 0.89285 1.24690 0.96628 0.97034 1.00976 1.69701 1.26127 1.15315 1.47115 0.86543 0.84389 0.79881 0.77696 1.21059 1.21742 1.20361 1.21887 0.95994 0.97346 1.01136 1.21610 0.88326 1.03003 0.88057 0.88186 0.88063 0.86811 0.91434 0.91426 0.91287 0.86356 0.87985 0.87685 0.91118 0.89834 0.91231 0.90053 0.91037 0.95535 0.95507 0.80724 0.93068 0.91392 0.90455 0.89172 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.35 14.11 28.88 0.41 -0.94 16 2 C -0.11 -0.96 9.83 -37.83 -0.37 -1.33 16 3 C -0.11 -1.01 5.98 -102.87 -0.62 -1.62 16 4 C -0.12 -0.88 8.53 36.01 0.31 -0.57 16 5 C -0.12 -1.13 8.45 -36.16 -0.31 -1.44 16 6 C -0.12 -1.06 4.12 -29.03 -0.12 -1.18 16 7 C 0.52 6.34 7.69 -10.99 -0.08 6.26 16 8 O -0.54 -8.54 15.45 5.55 0.09 -8.46 16 9 N -0.61 -6.92 2.97 -172.53 -0.51 -7.43 16 10 C 0.10 1.03 6.37 -3.48 -0.02 1.01 16 11 C -0.13 -1.61 5.26 -26.38 -0.14 -1.75 16 12 C -0.10 -1.37 2.19 -90.58 -0.20 -1.57 16 13 C 0.16 3.00 5.65 -4.04 -0.02 2.98 16 14 N -0.76 -17.36 5.12 -59.91 -0.31 -17.67 16 15 C -0.24 -6.81 10.47 -15.06 -0.16 -6.97 16 16 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 17 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 18 N -0.93 -29.20 13.97 55.49 0.78 -28.42 16 19 Si 0.88 21.57 27.74 -169.99 -4.71 16.86 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.28 -6.28 6.52 56.52 0.37 -5.92 16 23 C -0.12 -1.50 5.36 -26.63 -0.14 -1.64 16 24 C 0.11 1.29 6.43 -3.73 -0.02 1.26 16 25 H 0.10 0.57 8.06 -52.49 -0.42 0.15 16 26 H 0.10 0.64 6.06 -52.49 -0.32 0.32 16 27 H 0.11 0.90 8.06 -52.48 -0.42 0.47 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.41 6.19 -51.93 -0.32 0.09 16 30 H 0.07 0.42 6.72 -51.93 -0.35 0.07 16 31 H 0.12 1.23 8.05 -52.49 -0.42 0.81 16 32 H 0.10 0.75 5.60 -51.93 -0.29 0.46 16 33 H 0.11 0.79 7.70 -51.93 -0.40 0.39 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.65 5.93 -51.93 -0.31 0.34 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.14 7.15 -51.93 -0.37 0.77 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.36 7.94 4.70 -40.82 -0.19 7.75 16 42 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.09 1.11 7.01 -51.93 -0.36 0.75 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 362.78 15.07 5.47 5.47 Total: -1.00 -33.29 362.78 -8.37 -41.66 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.58 Total: 5.53 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -1.58 Total: -7.53 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -0.04 Total: -53.52 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.46 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.71 Total: 16.86 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.29 -8.37 -41.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205930331.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.187 kcal (2) G-P(sol) polarization free energy of solvation -33.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds