Wall clock time and date at job start Tue Mar 31 2020 07:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 119.99672 * 2 1 4 4 C 1.50696 * 120.00214 * 180.02562 * 2 1 3 5 5 C 1.53004 * 109.47162 * 94.99709 * 4 2 1 6 6 C 1.50696 * 109.47162 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00339 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00132 * 179.97438 * 6 5 4 9 9 C 1.47157 * 121.21448 * 0.02562 * 8 6 5 10 10 C 1.52836 * 107.97684 * 122.71172 * 9 8 6 11 11 C 1.53088 * 110.57856 * 57.34785 * 10 9 8 12 12 H 1.08997 * 113.06963 * 71.00308 * 11 10 9 13 13 C 1.56033 * 106.38761 * 195.43028 * 11 10 9 14 14 C 1.54503 * 102.61273 * 78.36832 * 13 11 10 15 15 N 1.47439 * 107.14454 * 22.85163 * 14 13 11 16 16 C 1.36944 * 126.05947 * 181.61454 * 15 14 13 17 17 H 1.07996 * 120.00276 * 179.97438 * 16 15 14 18 18 C 1.38812 * 119.99657 * 0.02562 * 16 15 14 19 19 N 1.31619 * 120.00559 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99869 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47232 * 89.99316 * 20 18 16 22 22 H 1.48504 * 109.47102 * 209.99640 * 20 18 16 23 23 H 1.48499 * 109.46846 * 329.99411 * 20 18 16 24 24 C 1.46466 * 107.88194 * 1.62026 * 15 14 13 25 25 H 1.09002 * 108.42550 * 89.89668 * 24 15 14 26 26 C 1.45676 * 120.98507 * 179.54962 * 8 6 5 27 27 H 1.08000 * 120.00065 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.00065 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47324 * 269.99866 * 3 2 1 30 30 H 1.08995 * 109.47308 * 30.00201 * 3 2 1 31 31 H 1.09000 * 109.46724 * 150.00371 * 3 2 1 32 32 H 1.09004 * 109.47029 * 335.00312 * 4 2 1 33 33 H 1.08998 * 109.47485 * 214.99722 * 4 2 1 34 34 H 1.09004 * 109.46656 * 60.00375 * 5 4 2 35 35 H 1.08998 * 109.46931 * 300.00352 * 5 4 2 36 36 H 1.09000 * 109.75580 * 3.09586 * 9 8 6 37 37 H 1.08998 * 109.79966 * 242.35761 * 9 8 6 38 38 H 1.09001 * 109.25617 * 297.05565 * 10 9 8 39 39 H 1.09003 * 109.25392 * 177.63123 * 10 9 8 40 40 H 1.09000 * 110.77975 * 196.64783 * 13 11 10 41 41 H 1.08996 * 110.78140 * 319.90011 * 13 11 10 42 42 H 1.08998 * 109.90316 * 142.22981 * 14 13 11 43 43 H 1.09003 * 109.90300 * 263.29750 * 14 13 11 44 44 H 0.96996 * 120.00624 * 180.02562 * 19 18 16 45 45 H 1.08995 * 108.23043 * 112.11366 * 26 8 6 46 46 H 1.09007 * 109.61249 * 353.11789 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3050 -0.0006 5 6 2.4274 -1.6832 -1.4378 6 6 3.1803 -2.9886 -1.4384 7 8 3.4036 -3.5605 -0.3925 8 7 3.6048 -3.5212 -2.6015 9 6 3.3482 -2.8506 -3.8860 10 6 4.6940 -2.6071 -4.5682 11 6 5.4489 -3.9258 -4.7551 12 1 5.0038 -4.5688 -5.5143 13 6 6.9279 -3.5449 -5.0745 14 6 7.4936 -3.1905 -3.6811 15 7 6.6477 -3.8703 -2.6830 16 6 6.7864 -3.7939 -1.3227 17 1 6.1082 -4.3348 -0.6795 18 6 7.7982 -3.0203 -0.7707 19 7 8.6246 -2.3607 -1.5545 20 14 7.9871 -2.9155 1.0848 21 1 8.8958 -3.9934 1.5516 22 1 8.5576 -1.5941 1.4505 23 1 6.6580 -3.0758 1.7274 24 6 5.6328 -4.6418 -3.4041 25 1 6.0290 -5.6393 -3.5941 26 6 4.3430 -4.7768 -2.6262 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 2.2451 1.6199 -1.0277 30 1 1.4744 2.0648 0.5138 31 1 3.0159 1.1748 0.5138 32 1 1.4386 -2.0856 0.4333 33 1 2.9742 -1.1991 0.5888 34 1 3.0523 -0.9027 -1.8717 35 1 1.5166 -1.7892 -2.0272 36 1 2.8463 -1.8989 -3.7110 37 1 2.7252 -3.4854 -4.5160 38 1 5.2922 -1.9344 -3.9535 39 1 4.5254 -2.1483 -5.5424 40 1 7.4614 -4.3928 -5.5042 41 1 6.9701 -2.6846 -5.7424 42 1 8.5218 -3.5425 -3.5975 43 1 7.4572 -2.1117 -3.5293 44 1 9.3318 -1.8205 -1.1687 45 1 3.7157 -5.5318 -3.1000 46 1 4.5698 -5.0880 -1.6064 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222781221.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:32 Heat of formation + Delta-G solvation = 1.304657 kcal Electronic energy + Delta-G solvation = -25179.681967 eV Core-core repulsion = 21876.989764 eV Total energy + Delta-G solvation = -3302.692203 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.99533 -38.19527 -36.28536 -34.94014 -32.80529 -31.58169 -30.80092 -28.98677 -28.35786 -27.26722 -25.03950 -24.50847 -23.02383 -22.49696 -19.97080 -19.50581 -18.39177 -18.11840 -16.61481 -16.52201 -15.51716 -15.26575 -14.87766 -14.65279 -14.16222 -14.12090 -13.91143 -13.57371 -13.40067 -13.08016 -12.75601 -12.66975 -12.19771 -11.96847 -11.90290 -11.68950 -11.55593 -11.32970 -11.19305 -10.96836 -10.86381 -10.75620 -10.73122 -10.66818 -10.06669 -9.83306 -9.80344 -9.62886 -9.46605 -9.25287 -8.96752 -8.50114 -8.04134 -6.73419 -5.61220 -2.92969 2.19709 3.19330 3.48832 3.54204 3.57703 3.62074 4.61076 4.72108 4.92711 5.05587 5.08309 5.21169 5.30258 5.32374 5.41321 5.53249 5.53568 5.56309 5.63514 5.70545 5.72561 5.77419 5.85104 5.90410 5.95899 6.01585 6.09689 6.09831 6.16577 6.30379 6.31408 6.32958 6.47146 6.52398 6.62923 6.65601 6.78991 6.89597 6.97290 7.17646 7.64615 7.67293 7.93872 7.98226 8.33387 8.77555 9.32700 9.93444 10.57869 11.51175 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.012275 B = 0.006652 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.584456 B = 4208.350000 C = 5501.024138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.123 4.123 4 C -0.073 4.073 5 C -0.129 4.129 6 C 0.519 3.481 7 O -0.537 6.537 8 N -0.595 5.595 9 C 0.111 3.889 10 C -0.123 4.123 11 C -0.101 4.101 12 H 0.075 0.925 13 C -0.144 4.144 14 C 0.179 3.821 15 N -0.589 5.589 16 C -0.211 4.211 17 H 0.082 0.918 18 C -0.009 4.009 19 N -0.927 5.927 20 Si 0.902 3.098 21 H -0.291 1.291 22 H -0.293 1.293 23 H -0.277 1.277 24 C 0.153 3.847 25 H 0.026 0.974 26 C 0.113 3.887 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.040 0.960 43 H 0.044 0.956 44 H 0.249 0.751 45 H 0.048 0.952 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.937 3.261 -6.490 15.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.115 4.115 3 C -0.180 4.180 4 C -0.110 4.110 5 C -0.169 4.169 6 C 0.307 3.693 7 O -0.413 6.413 8 N -0.328 5.328 9 C -0.012 4.012 10 C -0.161 4.161 11 C -0.121 4.121 12 H 0.093 0.907 13 C -0.182 4.182 14 C 0.054 3.946 15 N -0.315 5.315 16 C -0.339 4.339 17 H 0.099 0.901 18 C -0.204 4.204 19 N -0.575 5.575 20 Si 0.733 3.267 21 H -0.218 1.218 22 H -0.220 1.220 23 H -0.202 1.202 24 C 0.045 3.955 25 H 0.044 0.956 26 C -0.011 4.011 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.666 3.065 -5.736 15.135 hybrid contribution 0.330 0.188 0.779 0.866 sum -13.336 3.252 -4.958 14.595 Atomic orbital electron populations 1.23638 0.95191 1.01553 1.03897 1.21852 0.95383 0.95931 0.98372 1.20906 1.00456 0.94374 1.02224 1.20462 1.00931 0.93823 0.95833 1.21580 1.00589 0.96006 0.98691 1.20401 0.79266 0.86404 0.83210 1.90680 1.57135 1.62652 1.30874 1.47566 1.55130 1.24165 1.05894 1.21638 0.97402 0.97178 0.84970 1.21825 0.95927 0.98400 0.99951 1.22360 0.96129 0.96173 0.97448 0.90686 1.23170 0.95220 0.99916 0.99937 1.21200 0.93581 0.96851 0.82965 1.44306 1.30955 1.54375 1.01815 1.19050 1.10969 1.23676 0.80191 0.90059 1.24694 0.98294 0.99942 0.97499 1.69957 1.20049 1.35075 1.32466 0.86227 0.77917 0.76790 0.85792 1.21825 1.21952 1.20234 1.20716 0.89425 0.94811 0.90559 0.95650 1.21163 0.92277 0.84236 1.03407 0.88755 0.88607 0.91350 0.92077 0.91479 0.90750 0.90187 0.89033 0.89638 0.90458 0.91920 0.90108 0.92100 0.92802 0.92335 0.94200 0.93745 0.94100 0.93338 0.88672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.17 13.89 29.01 0.40 -1.76 16 2 C -0.12 -1.38 5.31 -101.07 -0.54 -1.91 16 3 C -0.12 -1.33 10.03 36.01 0.36 -0.97 16 4 C -0.07 -1.05 4.67 -27.88 -0.13 -1.18 16 5 C -0.13 -1.83 4.05 -27.88 -0.11 -1.94 16 6 C 0.52 9.69 7.71 -10.99 -0.08 9.61 16 7 O -0.54 -12.26 15.41 5.56 0.09 -12.17 16 8 N -0.59 -10.36 2.96 -174.98 -0.52 -10.88 16 9 C 0.11 1.50 6.36 -3.77 -0.02 1.48 16 10 C -0.12 -1.85 5.04 -26.77 -0.13 -1.99 16 11 C -0.10 -1.66 3.68 -88.43 -0.33 -1.98 16 12 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 13 C -0.14 -2.59 6.32 -24.32 -0.15 -2.75 16 14 C 0.18 4.25 4.61 -2.74 -0.01 4.24 16 15 N -0.59 -14.63 3.19 -164.43 -0.52 -15.15 16 16 C -0.21 -5.93 9.68 -15.06 -0.15 -6.07 16 17 H 0.08 2.36 6.48 -52.49 -0.34 2.02 16 18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 19 N -0.93 -27.64 10.38 55.49 0.58 -27.06 16 20 Si 0.90 23.50 29.55 -169.99 -5.02 18.48 16 21 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 22 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 23 H -0.28 -7.32 7.11 56.52 0.40 -6.91 16 24 C 0.15 3.07 3.01 -68.32 -0.21 2.86 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 C 0.11 2.13 5.57 -5.38 -0.03 2.10 16 27 H 0.09 0.86 8.04 -52.49 -0.42 0.43 16 28 H 0.10 0.97 7.99 -52.49 -0.42 0.55 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.57 8.06 -51.93 -0.42 0.15 16 31 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 32 H 0.07 1.09 7.94 -51.93 -0.41 0.68 16 33 H 0.08 1.33 8.06 -51.93 -0.42 0.92 16 34 H 0.09 1.27 7.79 -51.93 -0.40 0.87 16 35 H 0.09 0.99 7.91 -51.93 -0.41 0.58 16 36 H 0.08 0.89 6.02 -51.93 -0.31 0.57 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.53 6.86 -51.93 -0.36 1.18 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.95 7.98 -51.93 -0.41 0.54 16 42 H 0.04 1.07 7.57 -51.93 -0.39 0.68 16 43 H 0.04 1.18 7.05 -51.93 -0.37 0.81 16 44 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.10 2.12 5.48 -51.93 -0.28 1.84 16 LS Contribution 354.82 15.07 5.35 5.35 Total: -1.00 -32.58 354.82 -9.17 -41.75 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.89 Total: 0.31 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -1.23 Total: -0.62 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.47 Total: -53.09 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.09 Total: -12.17 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -5.02 Total: 18.48 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.58 -9.17 -41.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222781221.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.054 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds