Wall clock time and date at job start Tue Mar 31 2020 07:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47474 * 313.40350 * 3 2 1 5 5 C 1.53001 * 109.47592 * 180.02562 * 4 3 2 6 6 C 1.52993 * 109.47107 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.46859 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00188 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99960 * 180.02562 * 7 6 5 10 10 C 1.46507 * 119.99971 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.46955 * 34.99585 * 10 9 7 12 12 C 1.53002 * 109.46688 * 274.99603 * 10 9 7 13 13 C 1.52997 * 109.46817 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47127 * 60.00361 * 13 12 10 15 15 C 1.52999 * 109.46626 * 299.99539 * 14 13 12 16 16 C 1.52996 * 109.47258 * 154.99970 * 10 9 7 17 17 H 1.09000 * 109.47380 * 59.99156 * 16 10 9 18 18 N 1.46510 * 109.46858 * 299.99700 * 16 10 9 19 19 C 1.36936 * 119.99911 * 154.99804 * 18 16 10 20 20 H 1.08004 * 119.99844 * 0.02562 * 19 18 16 21 21 C 1.38806 * 120.00080 * 179.97438 * 19 18 16 22 22 N 1.31619 * 119.99818 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00022 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47003 * 60.00806 * 23 21 19 25 25 H 1.48508 * 109.46880 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47042 * 300.00380 * 23 21 19 27 27 H 4.44651 * 5.63283 * 180.02562 * 4 1 2 28 28 H 1.09002 * 109.46733 * 193.40201 * 3 2 1 29 29 H 1.09004 * 109.47516 * 73.40496 * 3 2 1 30 30 H 1.08995 * 109.47174 * 59.99761 * 4 3 2 31 31 H 1.09002 * 109.46818 * 300.00002 * 4 3 2 32 32 H 1.09002 * 109.47023 * 59.99601 * 5 4 3 33 33 H 1.09002 * 109.46692 * 299.99652 * 5 4 3 34 34 H 1.09002 * 109.47333 * 60.00001 * 6 5 4 35 35 H 1.08994 * 109.47578 * 299.99593 * 6 5 4 36 36 H 0.96998 * 120.00021 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.47070 * 60.00104 * 12 10 9 38 38 H 1.08996 * 109.47407 * 299.99704 * 12 10 9 39 39 H 1.09001 * 109.47502 * 300.00518 * 13 12 10 40 40 H 1.09001 * 109.47289 * 180.02562 * 13 12 10 41 41 H 1.08993 * 109.46955 * 60.00011 * 14 13 12 42 42 H 1.09000 * 109.47050 * 179.97438 * 14 13 12 43 43 H 1.09002 * 109.46719 * 180.02562 * 15 14 13 44 44 H 1.08993 * 109.47839 * 299.99931 * 15 14 13 45 45 H 0.96994 * 119.99768 * 334.99990 * 18 16 10 46 46 H 0.97010 * 119.99788 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1564 -0.9902 1.0480 5 6 4.6864 -0.9891 1.0484 6 6 5.1968 -1.9796 2.0969 7 6 6.7039 -1.9789 2.0968 8 8 7.3100 -1.2569 1.3337 9 7 7.3781 -2.7806 2.9448 10 6 8.8432 -2.7795 2.9452 11 1 9.2058 -1.7725 2.7389 12 6 9.3541 -3.7366 1.8664 13 6 10.8840 -3.7350 1.8663 14 6 11.3946 -4.1900 3.2350 15 6 10.8837 -3.2329 4.3138 16 6 9.3532 -3.2348 4.3139 17 1 8.9905 -4.2417 4.5203 18 7 8.8639 -2.3183 5.3469 19 6 8.7331 -2.7507 6.6396 20 1 8.9910 -3.7672 6.8977 21 6 8.2701 -1.8823 7.6185 22 7 7.9563 -0.6433 7.3040 23 14 8.0923 -2.4719 9.3821 24 1 9.4151 -2.9143 9.8917 25 1 7.5822 -1.3616 10.2262 26 1 7.1379 -3.6085 9.4301 27 1 -1.0499 -0.0003 0.0000 28 1 3.0087 1.0005 0.2382 29 1 3.0095 -0.2927 -0.9849 30 1 2.7936 -1.9900 0.8098 31 1 2.7930 -0.6968 2.0328 32 1 5.0489 0.0108 1.2868 33 1 5.0502 -1.2823 0.0636 34 1 4.8343 -2.9796 1.8589 35 1 4.8331 -1.6861 3.0815 36 1 6.8934 -3.3577 3.5554 37 1 8.9907 -3.4123 0.8912 38 1 8.9915 -4.7436 2.0727 39 1 11.2464 -2.7280 1.6598 40 1 11.2481 -4.4166 1.0975 41 1 11.0323 -5.1970 3.4415 42 1 12.4846 -4.1893 3.2348 43 1 11.2478 -3.5567 5.2888 44 1 11.2460 -2.2258 4.1073 45 1 8.6327 -1.4053 5.1152 46 1 7.6323 -0.0365 7.9880 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225752464.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:18 Heat of formation + Delta-G solvation = -13.388057 kcal Electronic energy + Delta-G solvation = -23300.320560 eV Core-core repulsion = 19996.991233 eV Total energy + Delta-G solvation = -3303.329327 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.71089 -37.92431 -36.13778 -34.03788 -33.65082 -33.19516 -31.14765 -30.24379 -29.02669 -27.64997 -25.08660 -23.71574 -22.23160 -21.19314 -20.98843 -19.98292 -19.34191 -18.18973 -17.22588 -16.52933 -16.00738 -15.90544 -14.93941 -14.75780 -14.37952 -14.15228 -13.96747 -13.71241 -13.53142 -13.11833 -12.95975 -12.88094 -12.62297 -12.15968 -12.11486 -11.72624 -11.62328 -11.26494 -11.08353 -10.92141 -10.82247 -10.74379 -10.68114 -10.54678 -10.33528 -10.32308 -10.23111 -10.19887 -9.75213 -9.63605 -9.37887 -8.91783 -8.51311 -6.99667 -5.79186 -3.08875 2.65233 2.68839 3.06170 3.40462 3.45642 3.46680 3.61388 4.21114 4.54426 4.86595 4.88960 4.94999 5.07891 5.15530 5.25823 5.31123 5.34300 5.47823 5.52099 5.54202 5.66694 5.70421 5.74610 5.79148 5.85339 5.89683 5.91219 5.92598 5.97289 5.99168 6.12540 6.22555 6.33075 6.35476 6.46390 6.49896 6.53909 6.59402 6.87466 6.94196 7.11506 7.46162 7.65577 7.99820 8.38082 8.67466 9.49724 10.06457 10.41847 11.42647 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.010928 B = 0.003887 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.645501 B = 7201.447333 C = 9418.328611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.180 4.180 3 C -0.016 4.016 4 C -0.115 4.115 5 C -0.102 4.102 6 C -0.142 4.142 7 C 0.513 3.487 8 O -0.554 6.554 9 N -0.709 5.709 10 C 0.141 3.859 11 H 0.082 0.918 12 C -0.123 4.123 13 C -0.114 4.114 14 C -0.119 4.119 15 C -0.133 4.133 16 C 0.173 3.827 17 H 0.050 0.950 18 N -0.721 5.721 19 C -0.241 4.241 20 H 0.069 0.931 21 C -0.011 4.011 22 N -0.930 5.930 23 Si 0.905 3.095 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.286 1.286 27 H 0.215 0.785 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.403 0.597 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.385 0.615 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.941 -4.906 -13.931 15.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.180 4.180 3 C -0.052 4.052 4 C -0.152 4.152 5 C -0.140 4.140 6 C -0.182 4.182 7 C 0.300 3.700 8 O -0.433 6.433 9 N -0.358 5.358 10 C 0.035 3.965 11 H 0.101 0.899 12 C -0.162 4.162 13 C -0.152 4.152 14 C -0.157 4.157 15 C -0.174 4.174 16 C 0.062 3.938 17 H 0.068 0.932 18 N -0.362 5.362 19 C -0.372 4.372 20 H 0.087 0.913 21 C -0.207 4.207 22 N -0.577 5.577 23 Si 0.736 3.264 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.213 1.213 27 H 0.232 0.768 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.237 0.763 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.219 0.781 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.531 -4.460 -14.279 15.949 hybrid contribution -0.590 -0.246 1.408 1.547 sum -6.121 -4.705 -12.870 15.008 Atomic orbital electron populations 1.24882 0.95979 1.01505 1.01456 1.23282 0.94710 1.00011 1.00026 1.18794 0.84376 1.01297 1.00774 1.21570 0.95671 0.99058 0.98946 1.21315 0.93527 1.00085 0.99081 1.21659 0.92605 1.01714 1.02202 1.20590 0.90008 0.79345 0.80070 1.90655 1.70602 1.41280 1.40723 1.45946 1.07352 1.43424 1.39103 1.21266 0.79276 1.00177 0.95763 0.89943 1.21863 0.95761 0.99541 0.99057 1.21474 0.95105 1.01363 0.97258 1.21578 0.99617 0.99550 0.94991 1.22228 0.98352 0.98819 0.98022 1.20474 0.91973 0.94509 0.86819 0.93242 1.42405 1.77827 1.11628 1.04333 1.19154 1.36894 0.96178 0.84981 0.91300 1.24732 1.02120 0.95871 0.97980 1.69665 1.50498 1.04696 1.32886 0.86308 0.77742 0.77301 0.85028 1.21341 1.21759 1.21324 0.76808 0.89329 0.89496 0.91618 0.91336 0.90850 0.91186 0.89355 0.88609 0.76310 0.92015 0.92139 0.91999 0.92455 0.92421 0.92722 0.91660 0.92486 0.78143 0.93469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.11 19.25 29.55 0.57 -1.54 16 2 C -0.18 -1.91 13.34 -37.13 -0.50 -2.40 16 3 C -0.02 -0.15 5.70 -29.52 -0.17 -0.32 16 4 C -0.11 -1.10 5.17 -26.73 -0.14 -1.24 16 5 C -0.10 -1.15 4.50 -26.73 -0.12 -1.28 16 6 C -0.14 -1.72 5.70 -27.89 -0.16 -1.88 16 7 C 0.51 8.26 7.79 -10.98 -0.09 8.18 16 8 O -0.55 -10.66 15.65 5.55 0.09 -10.57 16 9 N -0.71 -11.36 4.91 -53.80 -0.26 -11.62 16 10 C 0.14 2.38 1.98 -67.93 -0.13 2.24 16 11 H 0.08 1.62 7.58 -51.93 -0.39 1.22 16 12 C -0.12 -1.75 5.49 -26.73 -0.15 -1.90 16 13 C -0.11 -1.49 5.92 -26.73 -0.16 -1.65 16 14 C -0.12 -1.63 5.92 -26.73 -0.16 -1.79 16 15 C -0.13 -2.31 5.50 -26.71 -0.15 -2.46 16 16 C 0.17 3.24 2.30 -67.90 -0.16 3.08 16 17 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 18 N -0.72 -17.12 4.95 -53.40 -0.26 -17.39 16 19 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 20 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 22 N -0.93 -27.43 13.06 55.49 0.72 -26.71 16 23 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 H 0.22 1.30 7.80 -54.10 -0.42 0.88 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 33 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.40 6.08 8.60 -40.82 -0.35 5.73 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.38 10.11 7.80 -40.82 -0.32 9.79 16 46 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 379.63 15.07 5.72 5.72 Total: -1.00 -31.00 379.63 -8.97 -39.98 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -8.21 Total: 13.64 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -1.74 Total: -9.84 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 0.20 Total: -55.72 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.00 -8.97 -39.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225752464.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.588 kcal (2) G-P(sol) polarization free energy of solvation -31.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds