Wall clock time and date at job start Tue Mar 31 2020 08:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32870 * 1 3 3 C 1.47111 * 120.00146 * 2 1 4 4 C 1.50701 * 120.00177 * 359.97438 * 3 2 1 5 5 C 1.32870 * 120.00146 * 180.02562 * 3 2 1 6 6 C 1.50704 * 120.00274 * 174.08894 * 5 3 2 7 7 C 1.50698 * 109.46766 * 234.28018 * 6 5 3 8 8 O 1.21280 * 120.00201 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99908 * 179.97438 * 7 6 5 10 10 C 1.46503 * 120.00157 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.46776 * 35.00094 * 10 9 7 12 12 C 1.52994 * 109.47268 * 274.99817 * 10 9 7 13 13 C 1.52995 * 109.47223 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47408 * 59.99911 * 13 12 10 15 15 C 1.52994 * 109.47001 * 300.00225 * 14 13 12 16 16 C 1.52999 * 109.47497 * 59.99888 * 15 14 13 17 17 H 1.08999 * 109.47218 * 59.99389 * 16 15 14 18 18 N 1.46496 * 109.47474 * 179.97438 * 16 15 14 19 19 C 1.36927 * 120.00263 * 274.99851 * 18 16 15 20 20 H 1.07999 * 119.99812 * 0.02562 * 19 18 16 21 21 C 1.38810 * 120.00551 * 179.72354 * 19 18 16 22 22 N 1.31614 * 120.00704 * 180.27920 * 21 19 18 23 23 Si 1.86807 * 119.99470 * 0.27815 * 21 19 18 24 24 H 1.48503 * 109.47225 * 90.00183 * 23 21 19 25 25 H 1.48501 * 109.47044 * 209.99881 * 23 21 19 26 26 H 1.48493 * 109.47103 * 329.99969 * 23 21 19 27 27 H 1.07996 * 119.99982 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.99760 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.99760 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46916 * 265.16140 * 4 3 2 31 31 H 1.08997 * 109.47092 * 25.15777 * 4 3 2 32 32 H 1.09005 * 109.47513 * 145.15904 * 4 3 2 33 33 H 1.08001 * 120.00013 * 354.08070 * 5 3 2 34 34 H 1.08999 * 109.47255 * 114.27826 * 6 5 3 35 35 H 1.09003 * 109.46903 * 354.27648 * 6 5 3 36 36 H 0.97004 * 119.99850 * 359.97438 * 9 7 6 37 37 H 1.08999 * 109.47385 * 300.00397 * 12 10 9 38 38 H 1.08996 * 109.47251 * 59.99912 * 12 10 9 39 39 H 1.09005 * 109.47477 * 180.02562 * 13 12 10 40 40 H 1.09001 * 109.47334 * 299.99902 * 13 12 10 41 41 H 1.08996 * 109.46947 * 60.00444 * 14 13 12 42 42 H 1.08999 * 109.47070 * 180.02562 * 14 13 12 43 43 H 1.08996 * 109.47449 * 299.99911 * 15 14 13 44 44 H 1.08996 * 109.47251 * 179.97438 * 15 14 13 45 45 H 0.97003 * 119.99693 * 95.00078 * 18 16 15 46 46 H 0.96997 * 120.00180 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3109 2.5791 -0.0006 5 6 3.3930 1.2740 -0.0005 6 6 4.1465 2.5722 -0.1349 7 6 5.1156 2.4737 -1.2848 8 8 5.1876 1.4500 -1.9312 9 7 5.9022 3.5232 -1.5949 10 6 6.8447 3.4273 -2.7124 11 1 6.4092 2.8171 -3.5036 12 6 8.1454 2.7831 -2.2288 13 6 9.1299 2.6835 -3.3957 14 6 9.4246 4.0845 -3.9353 15 6 8.1239 4.7288 -4.4189 16 6 7.1394 4.8284 -3.2520 17 1 7.5746 5.4384 -2.4605 18 7 5.8942 5.4459 -3.7150 19 6 5.7802 6.8098 -3.7560 20 1 6.6085 7.4303 -3.4475 21 6 4.6024 7.3949 -4.2001 22 7 4.4948 8.7059 -4.2447 23 14 3.1700 6.3214 -4.7345 24 1 2.2983 6.0412 -3.5653 25 1 2.3852 7.0272 -5.7791 26 1 3.6877 5.0426 -5.2837 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 1.8687 -0.9354 0.0004 30 1 1.2047 2.9369 -1.0247 31 1 0.3235 2.4289 0.4359 32 1 1.8594 3.3157 0.5866 33 1 3.9330 0.3436 0.0955 34 1 4.6945 2.7713 0.7860 35 1 3.4426 3.3832 -0.3215 36 1 5.8443 4.3421 -1.0781 37 1 8.5808 3.3933 -1.4375 38 1 7.9354 1.7851 -1.8440 39 1 10.0564 2.2241 -3.0512 40 1 8.6947 2.0734 -4.1872 41 1 9.8599 4.6945 -3.1438 42 1 10.1256 4.0135 -4.7669 43 1 7.6886 4.1188 -5.2104 44 1 8.3338 5.7270 -4.8029 45 1 5.1504 4.8884 -3.9924 46 1 3.6716 9.1147 -4.5547 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228028809.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:55 Heat of formation + Delta-G solvation = -12.649224 kcal Electronic energy + Delta-G solvation = -23862.126612 eV Core-core repulsion = 20558.829323 eV Total energy + Delta-G solvation = -3303.297289 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.88505 -38.12915 -36.81794 -34.18925 -33.79664 -32.53479 -31.38058 -29.74468 -28.78314 -27.97293 -26.44583 -23.50588 -22.55045 -21.07015 -20.96756 -20.09316 -19.44509 -17.95725 -17.73843 -16.89617 -16.04875 -15.98841 -15.05972 -14.75828 -14.41612 -14.23392 -13.85325 -13.63232 -13.53170 -13.26506 -13.11987 -12.98662 -12.61929 -12.50806 -12.27423 -12.17690 -11.65455 -11.49785 -11.38843 -11.03427 -10.94910 -10.91500 -10.87625 -10.61172 -10.58126 -10.38076 -10.14173 -9.82080 -9.63384 -9.56876 -8.97659 -8.68418 -8.26792 -7.32693 -5.82544 -3.18223 1.26702 2.86216 2.94709 3.33296 3.40071 3.42669 3.54917 4.54615 4.60640 4.78836 4.90395 4.92431 5.06351 5.15455 5.20164 5.28003 5.34717 5.40725 5.43166 5.45525 5.55575 5.58630 5.66712 5.67302 5.77407 5.79704 5.85998 5.90286 5.95433 6.03175 6.23498 6.27392 6.36863 6.38706 6.40005 6.41458 6.46067 6.61992 6.78343 6.80640 6.87268 6.98454 7.82640 7.93072 8.36396 8.50286 9.14715 9.87656 10.07472 11.35519 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.010971 B = 0.005339 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.569077 B = 5243.366982 C = 7309.238747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 C -0.113 4.113 4 C -0.125 4.125 5 C -0.114 4.114 6 C -0.121 4.121 7 C 0.517 3.483 8 O -0.548 6.548 9 N -0.713 5.713 10 C 0.137 3.863 11 H 0.082 0.918 12 C -0.122 4.122 13 C -0.114 4.114 14 C -0.119 4.119 15 C -0.134 4.134 16 C 0.178 3.822 17 H 0.060 0.940 18 N -0.747 5.747 19 C -0.244 4.244 20 H 0.091 0.909 21 C 0.009 3.991 22 N -0.932 5.932 23 Si 0.880 3.120 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.278 1.278 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.405 0.595 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.362 0.638 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.172 -14.337 9.714 17.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.130 4.130 3 C -0.113 4.113 4 C -0.182 4.182 5 C -0.132 4.132 6 C -0.161 4.161 7 C 0.303 3.697 8 O -0.426 6.426 9 N -0.363 5.363 10 C 0.032 3.968 11 H 0.100 0.900 12 C -0.162 4.162 13 C -0.153 4.153 14 C -0.157 4.157 15 C -0.174 4.174 16 C 0.068 3.932 17 H 0.078 0.922 18 N -0.389 5.389 19 C -0.373 4.373 20 H 0.109 0.891 21 C -0.187 4.187 22 N -0.580 5.580 23 Si 0.710 3.290 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.204 1.204 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.131 0.869 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.135 0.865 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.240 0.760 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.194 0.806 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.236 -14.781 9.265 17.488 hybrid contribution -1.140 -0.257 -0.329 1.214 sum 0.096 -15.038 8.936 17.493 Atomic orbital electron populations 1.24397 0.95740 1.01957 1.00885 1.21850 0.95280 0.96044 0.99780 1.20557 0.93966 0.94345 1.02452 1.20919 1.00121 0.94519 1.02625 1.22763 0.93813 0.97723 0.98900 1.20832 0.98528 0.98523 0.98189 1.20431 0.80668 0.83463 0.85157 1.90669 1.68969 1.30057 1.52881 1.46001 1.39580 1.16486 1.34199 1.21334 0.88572 0.98303 0.88607 0.89985 1.21850 0.95193 1.00797 0.98329 1.21482 0.98416 0.97539 0.97817 1.21572 0.98092 0.95789 1.00290 1.22186 0.94695 1.01122 0.99441 1.20440 0.87853 0.90188 0.94702 0.92244 1.42793 1.12157 1.04372 1.79550 1.19043 1.00172 0.80904 1.37218 0.89130 1.24626 0.97644 0.95221 1.01229 1.69689 1.27174 1.08000 1.53110 0.86628 0.83693 0.80131 0.78533 1.21122 1.21758 1.20395 0.88283 0.88022 0.86908 0.91224 0.91551 0.91166 0.86510 0.87996 0.87791 0.76050 0.91859 0.91915 0.92285 0.92052 0.92167 0.92524 0.92591 0.91114 0.80555 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.85 14.11 28.88 0.41 -1.45 16 2 C -0.11 -1.22 9.83 -37.83 -0.37 -1.59 16 3 C -0.11 -1.36 5.98 -102.87 -0.62 -1.97 16 4 C -0.13 -1.38 8.54 36.01 0.31 -1.07 16 5 C -0.11 -1.41 8.45 -36.16 -0.31 -1.72 16 6 C -0.12 -1.46 5.77 -29.03 -0.17 -1.63 16 7 C 0.52 7.99 7.79 -10.99 -0.09 7.91 16 8 O -0.55 -10.30 15.70 5.56 0.09 -10.21 16 9 N -0.71 -10.73 4.91 -53.81 -0.26 -10.99 16 10 C 0.14 2.19 1.98 -67.93 -0.13 2.06 16 11 H 0.08 1.51 7.58 -51.93 -0.39 1.11 16 12 C -0.12 -1.65 5.49 -26.74 -0.15 -1.80 16 13 C -0.11 -1.42 5.92 -26.73 -0.16 -1.58 16 14 C -0.12 -1.57 5.92 -26.73 -0.16 -1.73 16 15 C -0.13 -2.23 5.50 -26.73 -0.15 -2.38 16 16 C 0.18 3.19 2.29 -67.93 -0.16 3.04 16 17 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 18 N -0.75 -16.71 4.76 -53.43 -0.25 -16.97 16 19 C -0.24 -6.50 10.41 -15.06 -0.16 -6.66 16 20 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 21 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 22 N -0.93 -28.48 13.97 55.49 0.78 -27.70 16 23 Si 0.88 21.98 27.74 -169.99 -4.72 17.27 16 24 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 26 H -0.28 -6.77 6.51 56.52 0.37 -6.41 16 27 H 0.10 0.79 8.06 -52.49 -0.42 0.36 16 28 H 0.10 0.93 6.06 -52.48 -0.32 0.61 16 29 H 0.11 1.13 8.06 -52.48 -0.42 0.70 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.63 6.19 -51.93 -0.32 0.31 16 32 H 0.07 0.70 6.70 -51.93 -0.35 0.35 16 33 H 0.12 1.45 8.05 -52.49 -0.42 1.03 16 34 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 1.22 5.79 -51.93 -0.30 0.92 16 36 H 0.40 5.63 8.60 -40.82 -0.35 5.28 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.36 8.39 5.66 -40.82 -0.23 8.16 16 46 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 367.91 15.07 5.54 5.54 Total: -1.00 -31.61 367.91 -8.58 -40.19 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -7.77 Total: 13.29 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -1.98 Total: -10.42 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 0.26 Total: -55.66 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.72 Total: 17.27 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.61 -8.58 -40.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228028809.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.545 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds