Wall clock time and date at job start Tue Mar 31 2020 07:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 120.00047 * 2 1 4 4 C 1.52997 * 109.47147 * 125.00027 * 3 2 1 5 5 C 1.53004 * 109.47066 * 186.93226 * 4 3 2 6 6 H 1.08994 * 109.87460 * 60.18240 * 5 4 3 7 7 C 1.54326 * 109.88175 * 181.36113 * 5 4 3 8 8 C 1.55155 * 102.94150 * 141.60617 * 7 5 4 9 9 C 1.55130 * 101.48792 * 324.33450 * 8 7 5 10 10 N 1.47020 * 109.87954 * 299.16816 * 5 4 3 11 11 C 1.34772 * 125.65059 * 61.60287 * 10 5 4 12 12 O 1.21594 * 119.99710 * 8.15790 * 11 10 5 13 13 N 1.34776 * 120.00322 * 188.14864 * 11 10 5 14 14 C 1.46501 * 120.00089 * 184.91427 * 13 11 10 15 15 C 1.53001 * 109.47129 * 184.93316 * 14 13 11 16 16 C 1.50703 * 115.54812 * 56.53224 * 15 14 13 17 17 H 1.07996 * 120.00105 * 219.73296 * 16 15 14 18 18 C 1.37878 * 119.99884 * 39.73099 * 16 15 14 19 19 N 1.31513 * 120.00219 * 11.35983 * 18 16 15 20 20 Si 1.86807 * 120.00041 * 191.35355 * 18 16 15 21 21 H 1.48493 * 109.46926 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.46890 * 120.00338 * 20 18 16 23 23 H 1.48501 * 109.46930 * 240.00488 * 20 18 16 24 24 C 1.52999 * 117.51954 * 202.23284 * 15 14 13 25 25 C 1.52999 * 117.50165 * 270.86451 * 15 14 13 26 26 H 1.08002 * 120.00366 * 180.02562 * 1 2 3 27 27 H 1.08003 * 120.00107 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.00107 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.46784 * 4.99954 * 3 2 1 30 30 H 1.09000 * 109.46851 * 245.00041 * 3 2 1 31 31 H 1.09000 * 109.47244 * 66.93029 * 4 3 2 32 32 H 1.09004 * 109.47294 * 306.92900 * 4 3 2 33 33 H 1.09001 * 110.71591 * 259.97121 * 7 5 4 34 34 H 1.09000 * 110.71882 * 23.06543 * 7 5 4 35 35 H 1.09010 * 111.00393 * 82.57333 * 8 7 5 36 36 H 1.08999 * 111.00733 * 206.38327 * 8 7 5 37 37 H 1.09006 * 110.49331 * 278.45176 * 9 8 7 38 38 H 1.08997 * 110.34333 * 156.05724 * 9 8 7 39 39 H 0.96999 * 119.99557 * 4.92058 * 13 11 10 40 40 H 1.08998 * 109.46678 * 64.93939 * 14 13 11 41 41 H 1.08995 * 109.47279 * 304.93235 * 14 13 11 42 42 H 0.97004 * 120.00428 * 174.98678 * 19 18 16 43 43 H 1.09005 * 117.49734 * 214.96708 * 24 15 14 44 44 H 1.09000 * 117.49757 * 359.97438 * 24 15 14 45 45 H 1.09004 * 117.49873 * 359.97438 * 25 15 14 46 46 H 1.09003 * 117.49772 * 144.97293 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.6733 2.7198 1.2843 6 1 2.9007 3.4728 1.4395 7 6 4.6810 2.7485 2.4528 8 6 5.8378 3.6176 1.8928 9 6 5.8442 3.1983 0.3992 10 7 4.4221 3.0178 0.0547 11 6 3.8966 3.1057 -1.1832 12 8 2.6905 3.0801 -1.3349 13 7 4.7080 3.2222 -2.2531 14 6 4.1370 3.4258 -3.5868 15 6 5.2561 3.4020 -4.6298 16 6 6.1043 2.1564 -4.6446 17 1 7.1711 2.2313 -4.7952 18 6 5.5184 0.9212 -4.4658 19 7 4.2092 0.8024 -4.5059 20 14 6.5841 -0.5836 -4.1668 21 1 8.0145 -0.1851 -4.1672 22 1 6.2378 -1.1822 -2.8527 23 1 6.3469 -1.5797 -5.2424 24 6 4.9884 4.0904 -5.9697 25 6 5.9434 4.7287 -4.9590 26 1 -0.5401 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1316 0.0896 30 1 2.6212 1.4026 -0.9314 31 1 3.8133 0.5852 1.0299 32 1 2.4941 1.1130 2.1020 33 1 4.2383 3.2160 3.3324 34 1 5.0291 1.7424 2.6866 35 1 5.6175 4.6795 2.0030 36 1 6.7836 3.3653 2.3723 37 1 6.3880 2.2628 0.2678 38 1 6.2861 3.9842 -0.2132 39 1 5.6700 3.1711 -2.1400 40 1 3.6289 4.3896 -3.6211 41 1 3.4231 2.6307 -3.8016 42 1 3.8000 -0.0755 -4.4529 43 1 5.4260 3.6424 -6.8619 44 1 4.0147 4.5601 -6.1085 45 1 5.5981 5.6186 -4.4328 46 1 7.0092 4.7006 -5.1859 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341617421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:04 Heat of formation + Delta-G solvation = 26.844969 kcal Electronic energy + Delta-G solvation = -24931.636453 eV Core-core repulsion = 21630.051761 eV Total energy + Delta-G solvation = -3301.584692 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.08387 -37.53891 -36.45121 -35.13779 -33.05325 -32.15994 -31.13621 -31.04525 -27.29261 -26.01402 -25.17915 -23.50444 -21.74139 -21.23525 -20.90076 -19.46247 -19.15939 -18.68065 -17.54534 -16.56179 -16.08057 -15.24217 -14.88972 -14.74105 -14.19058 -14.13665 -13.68563 -13.40460 -13.28308 -12.99750 -12.75967 -12.52579 -12.41229 -11.90009 -11.68308 -11.61013 -11.53501 -11.18163 -11.04439 -10.99047 -10.76504 -10.73775 -10.50768 -10.49441 -10.27770 -10.05284 -9.55439 -9.18574 -9.08677 -8.84632 -8.75787 -8.19378 -7.98858 -7.64612 -6.05171 -4.13279 2.71410 3.21283 3.24610 3.31947 3.33358 3.95706 4.32002 4.55150 4.60614 4.84379 4.89990 5.09466 5.22484 5.35549 5.45563 5.48213 5.51659 5.61713 5.68987 5.72236 5.81652 5.88290 5.92357 6.03563 6.08198 6.15134 6.26136 6.32351 6.35228 6.57414 6.62154 6.65764 6.70100 6.72380 6.90825 6.93909 7.09655 7.23785 7.27449 7.30753 7.58137 7.68333 7.80065 7.97627 8.35414 8.78643 8.90555 9.43846 9.48149 10.94329 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.012135 B = 0.006105 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.847859 B = 4584.942283 C = 5158.909063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.139 4.139 3 C -0.104 4.104 4 C -0.120 4.120 5 C 0.158 3.842 6 H 0.070 0.930 7 C -0.128 4.128 8 C -0.130 4.130 9 C 0.101 3.899 10 N -0.640 5.640 11 C 0.711 3.289 12 O -0.583 6.583 13 N -0.709 5.709 14 C 0.175 3.825 15 C 0.040 3.960 16 C -0.500 4.500 17 H 0.060 0.940 18 C 0.079 3.921 19 N -0.863 5.863 20 Si 0.886 3.114 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.284 1.284 24 C -0.192 4.192 25 C -0.212 4.212 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.116 0.884 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.393 0.607 40 H 0.020 0.980 41 H 0.111 0.889 42 H 0.263 0.737 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.367 2.881 13.154 13.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.158 4.158 3 C -0.140 4.140 4 C -0.158 4.158 5 C 0.053 3.947 6 H 0.088 0.912 7 C -0.166 4.166 8 C -0.168 4.168 9 C -0.023 4.023 10 N -0.380 5.380 11 C 0.414 3.586 12 O -0.463 6.463 13 N -0.360 5.360 14 C 0.052 3.948 15 C 0.039 3.961 16 C -0.537 4.537 17 H 0.078 0.922 18 C -0.126 4.126 19 N -0.498 5.498 20 Si 0.714 3.286 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.210 1.210 24 C -0.231 4.231 25 C -0.249 4.249 26 H 0.105 0.895 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.134 0.866 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.227 0.773 40 H 0.038 0.962 41 H 0.128 0.872 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.273 2.760 12.984 13.276 hybrid contribution 1.038 -1.004 0.018 1.444 sum 1.311 1.756 13.001 13.185 Atomic orbital electron populations 1.23668 0.96049 1.00920 1.04597 1.23266 0.96137 0.99263 0.97092 1.21591 0.98530 0.93293 1.00613 1.21967 0.98682 0.96292 0.98904 1.21352 0.93599 0.96582 0.83117 0.91194 1.22703 0.96009 1.00777 0.97148 1.22765 0.98862 1.00163 0.95021 1.22233 0.83639 1.00776 0.95657 1.47598 1.08074 1.76770 1.05552 1.15442 0.85351 0.78612 0.79180 1.90877 1.12844 1.57826 1.84773 1.45040 1.09106 1.75691 1.06183 1.20898 0.96267 0.99339 0.78312 1.19172 0.94966 0.90140 0.91832 1.20439 0.93157 0.89183 1.50926 0.92152 1.24928 0.94740 0.98686 0.94226 1.69835 1.08888 1.23595 1.47467 0.86634 0.80811 0.83124 0.78070 1.19719 1.20893 1.21028 1.22876 0.98144 1.06188 0.95851 1.22930 0.97299 0.98179 1.06522 0.89536 0.88934 0.88589 0.91115 0.86639 0.92284 0.92033 0.90412 0.90604 0.90751 0.90228 0.91855 0.90921 0.77320 0.96185 0.87168 0.92701 0.90208 0.91571 0.91462 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.31 14.32 29.02 0.42 -2.90 16 2 C -0.14 -2.33 9.51 -36.02 -0.34 -2.68 16 3 C -0.10 -1.88 3.81 -27.88 -0.11 -1.99 16 4 C -0.12 -1.76 4.78 -26.73 -0.13 -1.89 16 5 C 0.16 2.20 3.16 -66.95 -0.21 1.99 16 6 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 7 C -0.13 -1.29 6.47 -24.90 -0.16 -1.45 16 8 C -0.13 -1.25 7.10 -24.46 -0.17 -1.43 16 9 C 0.10 1.30 6.40 -2.41 -0.02 1.28 16 10 N -0.64 -10.44 3.06 -168.55 -0.52 -10.96 16 11 C 0.71 14.63 7.18 -86.92 -0.62 14.00 16 12 O -0.58 -13.56 11.98 5.28 0.06 -13.49 16 13 N -0.71 -15.01 5.30 -65.23 -0.35 -15.35 16 14 C 0.18 4.13 4.97 -4.04 -0.02 4.11 16 15 C 0.04 0.93 1.84 -155.66 -0.29 0.65 16 16 C -0.50 -12.73 8.48 -34.44 -0.29 -13.02 16 17 H 0.06 1.54 7.84 -52.49 -0.41 1.13 16 18 C 0.08 2.06 5.24 -17.82 -0.09 1.97 16 19 N -0.86 -23.50 10.98 55.43 0.61 -22.89 16 20 Si 0.89 20.34 29.56 -169.99 -5.02 15.32 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C -0.19 -4.25 9.96 -26.73 -0.27 -4.52 16 25 C -0.21 -4.39 9.93 -26.73 -0.27 -4.65 16 26 H 0.09 1.17 8.06 -52.49 -0.42 0.74 16 27 H 0.09 1.41 7.84 -52.48 -0.41 1.00 16 28 H 0.10 1.54 8.06 -52.48 -0.42 1.11 16 29 H 0.07 1.36 7.04 -51.93 -0.37 0.99 16 30 H 0.12 2.60 4.69 -53.28 -0.25 2.35 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.72 7.85 -51.93 -0.41 0.31 16 35 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.91 7.71 -51.93 -0.40 0.51 16 39 H 0.39 7.90 6.97 -40.82 -0.28 7.61 16 40 H 0.02 0.46 8.10 -51.93 -0.42 0.04 16 41 H 0.11 3.00 5.96 -51.93 -0.31 2.69 16 42 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 43 H 0.08 1.79 8.14 -51.93 -0.42 1.36 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 46 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 LS Contribution 363.34 15.07 5.48 5.48 Total: -1.00 -28.33 363.34 -10.20 -38.53 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -7.89 Total: 13.88 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -2.57 Total: -10.52 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.25 Total: -49.19 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.06 Total: -13.49 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.33 -10.20 -38.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341617421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.378 kcal (2) G-P(sol) polarization free energy of solvation -28.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds