Wall clock time and date at job start Tue Mar 31 2020 07:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 120.00047 * 2 1 4 4 C 1.52997 * 109.47147 * 125.00027 * 3 2 1 5 5 C 1.53004 * 109.47066 * 186.93226 * 4 3 2 6 6 H 1.08994 * 109.87460 * 60.18240 * 5 4 3 7 7 C 1.54326 * 109.88175 * 181.36113 * 5 4 3 8 8 C 1.55155 * 102.94150 * 141.60617 * 7 5 4 9 9 C 1.55130 * 101.48792 * 324.33450 * 8 7 5 10 10 N 1.47020 * 109.87954 * 299.16816 * 5 4 3 11 11 C 1.34772 * 125.65059 * 61.60287 * 10 5 4 12 12 O 1.21594 * 119.99710 * 8.15790 * 11 10 5 13 13 N 1.34776 * 120.00322 * 188.14864 * 11 10 5 14 14 C 1.46501 * 120.00089 * 184.91427 * 13 11 10 15 15 C 1.53001 * 109.47129 * 184.93316 * 14 13 11 16 16 C 1.50703 * 115.54812 * 56.53224 * 15 14 13 17 17 H 1.07996 * 120.00105 * 219.73296 * 16 15 14 18 18 C 1.37878 * 119.99884 * 39.73099 * 16 15 14 19 19 N 1.31513 * 120.00219 * 11.35983 * 18 16 15 20 20 Si 1.86807 * 120.00041 * 191.35355 * 18 16 15 21 21 H 1.48493 * 109.46926 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.46890 * 120.00338 * 20 18 16 23 23 H 1.48501 * 109.46930 * 240.00488 * 20 18 16 24 24 C 1.52999 * 117.51954 * 202.23284 * 15 14 13 25 25 C 1.52999 * 117.50165 * 270.86451 * 15 14 13 26 26 H 1.08002 * 120.00366 * 180.02562 * 1 2 3 27 27 H 1.08003 * 120.00107 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.00107 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.46784 * 4.99954 * 3 2 1 30 30 H 1.09000 * 109.46851 * 245.00041 * 3 2 1 31 31 H 1.09000 * 109.47244 * 66.93029 * 4 3 2 32 32 H 1.09004 * 109.47294 * 306.92900 * 4 3 2 33 33 H 1.09001 * 110.71591 * 259.97121 * 7 5 4 34 34 H 1.09000 * 110.71882 * 23.06543 * 7 5 4 35 35 H 1.09010 * 111.00393 * 82.57333 * 8 7 5 36 36 H 1.08999 * 111.00733 * 206.38327 * 8 7 5 37 37 H 1.09006 * 110.49331 * 278.45176 * 9 8 7 38 38 H 1.08997 * 110.34333 * 156.05724 * 9 8 7 39 39 H 0.96999 * 119.99557 * 4.92058 * 13 11 10 40 40 H 1.08998 * 109.46678 * 64.93939 * 14 13 11 41 41 H 1.08995 * 109.47279 * 304.93235 * 14 13 11 42 42 H 0.97004 * 120.00428 * 174.98678 * 19 18 16 43 43 H 1.09005 * 117.49734 * 214.96708 * 24 15 14 44 44 H 1.09000 * 117.49757 * 359.97438 * 24 15 14 45 45 H 1.09004 * 117.49873 * 359.97438 * 25 15 14 46 46 H 1.09003 * 117.49772 * 144.97293 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.6733 2.7198 1.2843 6 1 2.9007 3.4728 1.4395 7 6 4.6810 2.7485 2.4528 8 6 5.8378 3.6176 1.8928 9 6 5.8442 3.1983 0.3992 10 7 4.4221 3.0178 0.0547 11 6 3.8966 3.1057 -1.1832 12 8 2.6905 3.0801 -1.3349 13 7 4.7080 3.2222 -2.2531 14 6 4.1370 3.4258 -3.5868 15 6 5.2561 3.4020 -4.6298 16 6 6.1043 2.1564 -4.6446 17 1 7.1711 2.2313 -4.7952 18 6 5.5184 0.9212 -4.4658 19 7 4.2092 0.8024 -4.5059 20 14 6.5841 -0.5836 -4.1668 21 1 8.0145 -0.1851 -4.1672 22 1 6.2378 -1.1822 -2.8527 23 1 6.3469 -1.5797 -5.2424 24 6 4.9884 4.0904 -5.9697 25 6 5.9434 4.7287 -4.9590 26 1 -0.5401 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1316 0.0896 30 1 2.6212 1.4026 -0.9314 31 1 3.8133 0.5852 1.0299 32 1 2.4941 1.1130 2.1020 33 1 4.2383 3.2160 3.3324 34 1 5.0291 1.7424 2.6866 35 1 5.6175 4.6795 2.0030 36 1 6.7836 3.3653 2.3723 37 1 6.3880 2.2628 0.2678 38 1 6.2861 3.9842 -0.2132 39 1 5.6700 3.1711 -2.1400 40 1 3.6289 4.3896 -3.6211 41 1 3.4231 2.6307 -3.8016 42 1 3.8000 -0.0755 -4.4529 43 1 5.4260 3.6424 -6.8619 44 1 4.0147 4.5601 -6.1085 45 1 5.5981 5.6186 -4.4328 46 1 7.0092 4.7006 -5.1859 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341617421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:02 Heat of formation + Delta-G solvation = 11.882632 kcal Electronic energy + Delta-G solvation = -24932.285268 eV Core-core repulsion = 21630.051761 eV Total energy + Delta-G solvation = -3302.233507 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -41.46146 -39.05509 -38.06424 -36.46659 -34.69463 -34.13377 -32.34419 -32.22626 -28.43661 -27.85445 -27.02106 -24.74164 -23.08428 -22.82271 -21.98658 -21.15762 -20.64906 -20.11763 -19.01598 -17.90140 -17.81159 -16.79513 -16.65909 -16.11442 -15.82416 -15.54563 -15.01332 -14.97022 -14.45831 -14.38084 -14.17465 -13.91004 -13.65604 -13.47989 -13.27679 -13.06366 -12.92589 -12.77235 -12.63867 -12.33066 -12.23415 -12.04311 -12.02162 -11.80157 -11.57262 -11.41430 -11.27758 -11.05357 -10.78153 -10.60272 -10.24009 -10.03782 -9.47312 -9.23478 -8.03021 -6.16448 1.36988 1.41221 1.42439 1.51115 1.86733 2.38628 2.41253 3.02437 3.35129 3.64973 3.67306 3.78988 3.92174 4.17288 4.18380 4.27739 4.29539 4.44275 4.52738 4.54986 4.58026 4.71442 4.77692 4.80288 4.82834 4.90842 4.96886 4.99428 5.00595 5.12600 5.14455 5.15394 5.27760 5.28857 5.42464 5.53388 5.54598 5.59792 5.62155 5.79284 5.95541 5.96619 5.98696 6.32162 6.40427 6.83804 7.30342 7.46960 7.85562 8.93999 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.012135 B = 0.006105 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.847859 B = 4584.942283 C = 5158.909063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.162 4.162 3 C -0.095 4.095 4 C -0.113 4.113 5 C 0.149 3.851 6 H 0.059 0.941 7 C -0.116 4.116 8 C -0.116 4.116 9 C 0.089 3.911 10 N -0.639 5.639 11 C 0.705 3.295 12 O -0.618 6.618 13 N -0.709 5.709 14 C 0.191 3.809 15 C 0.011 3.989 16 C -0.502 4.502 17 H 0.059 0.941 18 C 0.038 3.962 19 N -0.891 5.891 20 Si 0.941 3.059 21 H -0.260 1.260 22 H -0.288 1.288 23 H -0.288 1.288 24 C -0.197 4.197 25 C -0.181 4.181 26 H 0.111 0.889 27 H 0.090 0.910 28 H 0.103 0.897 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.397 0.603 40 H 0.016 0.984 41 H 0.070 0.930 42 H 0.256 0.744 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.996 3.097 15.371 15.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.181 4.181 3 C -0.132 4.132 4 C -0.151 4.151 5 C 0.045 3.955 6 H 0.077 0.923 7 C -0.154 4.154 8 C -0.154 4.154 9 C -0.033 4.033 10 N -0.378 5.378 11 C 0.407 3.593 12 O -0.501 6.501 13 N -0.361 5.361 14 C 0.067 3.933 15 C 0.010 3.990 16 C -0.540 4.540 17 H 0.077 0.923 18 C -0.164 4.164 19 N -0.527 5.527 20 Si 0.767 3.233 21 H -0.184 1.184 22 H -0.214 1.214 23 H -0.214 1.214 24 C -0.235 4.235 25 C -0.218 4.218 26 H 0.129 0.871 27 H 0.108 0.892 28 H 0.121 0.879 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.122 0.878 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.127 0.873 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.232 0.768 40 H 0.034 0.966 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.103 0.897 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.950 2.988 15.236 15.648 hybrid contribution 0.469 -1.043 -0.699 1.340 sum 2.418 1.945 14.537 14.864 Atomic orbital electron populations 1.23868 0.95647 1.01967 1.02345 1.23295 0.96796 0.98831 0.99132 1.21295 0.98461 0.93398 1.00003 1.21931 0.97973 0.96830 0.98404 1.21626 0.94613 0.95613 0.83645 0.92257 1.22706 0.94850 1.01919 0.95946 1.22763 1.00108 1.00421 0.92132 1.22529 0.81406 1.01016 0.98357 1.47668 1.10045 1.75399 1.04687 1.15634 0.84878 0.78470 0.80325 1.90857 1.14432 1.59150 1.85617 1.44862 1.09246 1.76284 1.05686 1.20469 0.95699 0.97412 0.79754 1.19213 0.95823 0.91247 0.92704 1.20635 0.93169 0.89985 1.50172 0.92285 1.25532 0.95465 1.01066 0.94309 1.70012 1.10315 1.23428 1.48980 0.85772 0.80018 0.80185 0.77292 1.18402 1.21406 1.21412 1.22881 0.99116 1.06322 0.95231 1.22915 0.97504 0.96973 1.04382 0.87127 0.89168 0.87909 0.93159 0.91243 0.92662 0.89477 0.87801 0.89496 0.90125 0.87278 0.91839 0.90852 0.76788 0.96584 0.91248 0.93477 0.90730 0.90946 0.89669 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.11 14.32 67.79 0.97 -5.14 16 2 C -0.16 -5.50 9.51 25.65 0.24 -5.26 16 3 C -0.09 -3.57 3.81 29.85 0.11 -3.46 16 4 C -0.11 -3.27 4.78 30.59 0.15 -3.12 16 5 C 0.15 3.99 3.16 45.34 0.14 4.14 16 6 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 7 C -0.12 -1.93 6.47 31.78 0.21 -1.72 16 8 C -0.12 -1.83 7.10 32.06 0.23 -1.60 16 9 C 0.09 2.16 6.40 86.93 0.56 2.71 16 10 N -0.64 -20.80 3.06 -805.43 -2.47 -23.27 16 11 C 0.70 30.02 7.18 179.06 1.29 31.31 16 12 O -0.62 -30.44 11.98 -4.01 -0.05 -30.49 16 13 N -0.71 -30.86 5.30 -478.54 -2.54 -33.40 16 14 C 0.19 9.35 4.97 86.38 0.43 9.78 16 15 C 0.01 0.52 1.84 -52.93 -0.10 0.42 16 16 C -0.50 -25.65 8.48 25.60 0.22 -25.43 16 17 H 0.06 2.97 7.84 -2.91 -0.02 2.95 16 18 C 0.04 2.01 5.24 84.66 0.44 2.46 16 19 N -0.89 -50.33 10.98 21.45 0.24 -50.10 16 20 Si 0.94 42.14 29.56 68.60 2.03 44.17 16 21 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 22 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 24 C -0.20 -8.67 9.96 30.59 0.30 -8.37 16 25 C -0.18 -7.20 9.93 30.59 0.30 -6.89 16 26 H 0.11 2.80 8.06 -2.91 -0.02 2.77 16 27 H 0.09 2.75 7.84 -2.91 -0.02 2.73 16 28 H 0.10 3.30 8.06 -2.91 -0.02 3.27 16 29 H 0.05 2.04 7.04 -2.39 -0.02 2.02 16 30 H 0.07 3.33 4.69 -23.76 -0.11 3.22 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 2.06 8.13 -2.38 -0.02 2.04 16 33 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 1.30 7.85 -2.39 -0.02 1.28 16 35 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.07 1.75 7.71 -2.39 -0.02 1.73 16 39 H 0.40 16.17 6.97 -92.71 -0.65 15.52 16 40 H 0.02 0.77 8.10 -2.39 -0.02 0.75 16 41 H 0.07 4.00 5.96 -2.39 -0.01 3.99 16 42 H 0.26 14.24 8.32 -92.71 -0.77 13.47 16 43 H 0.07 3.32 8.14 -2.38 -0.02 3.30 16 44 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 45 H 0.08 3.09 8.14 -2.38 -0.02 3.07 16 46 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -64.28 363.34 2.90 -61.38 By element: Atomic # 1 Polarization: 41.69 SS G_CDS: 0.20 Total: 41.89 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 5.49 Total: -10.18 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -4.77 Total: -106.76 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.05 Total: -30.49 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -64.28 2.90 -61.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341617421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.264 kcal (2) G-P(sol) polarization free energy of solvation -64.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds