Wall clock time and date at job start Tue Mar 31 2020 08:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47069 * 2 1 4 4 C 1.53003 * 109.47338 * 120.00127 * 2 1 3 5 5 H 1.09001 * 109.46607 * 53.88829 * 4 2 1 6 6 O 1.42893 * 109.46832 * 293.88690 * 4 2 1 7 7 C 1.53002 * 109.47086 * 173.88589 * 4 2 1 8 8 C 1.53003 * 109.46942 * 67.81536 * 7 4 2 9 9 C 1.53000 * 109.47154 * 307.81820 * 7 4 2 10 10 C 1.53002 * 109.46995 * 187.81396 * 7 4 2 11 11 N 1.46494 * 109.47060 * 180.02562 * 10 7 4 12 12 C 1.38828 * 120.00099 * 180.02562 * 11 10 7 13 13 C 1.39795 * 119.58154 * 359.72669 * 12 11 10 14 14 C 1.38594 * 119.48566 * 179.70363 * 13 12 11 15 15 C 1.38391 * 118.68529 * 0.55883 * 14 13 12 16 16 C 1.40556 * 119.14330 * 359.73088 * 15 14 13 17 17 C 1.41315 * 119.78053 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00085 * 8.76471 * 17 16 15 19 19 C 1.40027 * 120.00204 * 188.76764 * 17 16 15 20 20 N 1.30745 * 119.99792 * 8.75336 * 19 17 16 21 21 Si 1.86795 * 120.00228 * 188.75980 * 19 17 16 22 22 H 1.48498 * 109.47197 * 94.97020 * 21 19 17 23 23 H 1.48497 * 109.47029 * 214.97275 * 21 19 17 24 24 H 1.48500 * 109.47159 * 334.97170 * 21 19 17 25 25 N 1.31955 * 119.58643 * 179.97438 * 12 11 10 26 26 H 1.09004 * 109.47093 * 299.99729 * 1 2 3 27 27 H 1.08998 * 109.47192 * 59.99820 * 1 2 3 28 28 H 1.08999 * 109.47042 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47093 * 240.00271 * 2 1 3 30 30 H 1.08997 * 109.47295 * 327.51838 * 3 2 1 31 31 H 1.09000 * 109.47375 * 87.52507 * 3 2 1 32 32 H 1.09007 * 109.47156 * 207.52226 * 3 2 1 33 33 H 0.96698 * 114.00667 * 299.99619 * 6 4 2 34 34 H 1.08997 * 109.46740 * 156.10712 * 8 7 4 35 35 H 1.09001 * 109.47177 * 276.10735 * 8 7 4 36 36 H 1.08999 * 109.47151 * 36.10883 * 8 7 4 37 37 H 1.09007 * 109.47000 * 299.99965 * 9 7 4 38 38 H 1.08994 * 109.47799 * 59.99992 * 9 7 4 39 39 H 1.09002 * 109.47198 * 180.02562 * 9 7 4 40 40 H 1.09000 * 109.46813 * 60.00558 * 10 7 4 41 41 H 1.08994 * 109.47031 * 300.00025 * 10 7 4 42 42 H 0.97007 * 119.99938 * 0.02562 * 11 10 7 43 43 H 1.07996 * 120.25620 * 359.97438 * 13 12 11 44 44 H 1.08006 * 120.65908 * 180.26722 * 14 13 12 45 45 H 1.07996 * 120.42599 * 179.74711 * 15 14 13 46 46 H 0.96992 * 119.99984 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5901 -1.7125 1.3055 6 8 1.6845 0.0301 2.4115 7 6 3.5623 -0.8557 1.1747 8 6 4.2029 0.5289 1.2918 9 6 3.9537 -1.4871 -0.1628 10 6 4.0527 -1.7430 2.3206 11 7 5.5102 -1.8712 2.2497 12 6 6.1866 -2.6348 3.1914 13 6 5.4686 -3.2729 4.2071 14 6 6.1452 -4.0397 5.1425 15 6 7.5221 -4.1409 5.0479 16 6 8.1878 -3.4704 4.0072 17 6 9.5936 -3.5641 3.8981 18 1 10.1386 -4.2579 4.5211 19 6 10.2802 -2.7573 2.9824 20 7 9.6494 -1.8008 2.3526 21 14 12.0971 -3.0477 2.6605 22 1 12.2555 -3.9215 1.4703 23 1 12.7700 -1.7472 2.4129 24 1 12.7103 -3.7052 3.8424 25 7 7.4996 -2.7451 3.1194 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.3438 2.0740 -0.5519 31 1 2.1193 1.7999 1.0267 32 1 3.0204 1.4813 -0.4749 33 1 2.0511 0.9247 2.4290 34 1 5.2239 0.4269 1.6594 35 1 4.2153 1.0075 0.3126 36 1 3.6257 1.1386 1.9869 37 1 3.4973 -2.4736 -0.2463 38 1 3.6045 -0.8550 -0.9792 39 1 5.0382 -1.5833 -0.2157 40 1 3.5963 -2.7294 2.2371 41 1 3.7738 -1.2931 3.2734 42 1 6.0028 -1.4226 1.5446 43 1 4.3946 -3.1727 4.2597 44 1 5.6089 -4.5444 5.9326 45 1 8.0780 -4.7276 5.7642 46 1 10.1250 -1.2418 1.7186 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342859992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:55 Heat of formation + Delta-G solvation = -18.252398 kcal Electronic energy + Delta-G solvation = -24175.737485 eV Core-core repulsion = 20872.197225 eV Total energy + Delta-G solvation = -3303.540260 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.17344 -38.13652 -35.79864 -34.10563 -33.54379 -32.37428 -30.31971 -28.83809 -28.50718 -26.63998 -26.20642 -25.31115 -24.89349 -21.45154 -20.84035 -20.02633 -18.95745 -17.31600 -17.20226 -16.33006 -15.87776 -15.21419 -15.05147 -14.57433 -14.46049 -14.06158 -13.84464 -13.32432 -13.10432 -12.92031 -12.74798 -12.45674 -12.37988 -12.29403 -12.17127 -11.82718 -11.75832 -11.68779 -11.41040 -11.21086 -10.97275 -10.86548 -10.83038 -10.61469 -10.51834 -10.45138 -10.27000 -9.90593 -9.63218 -9.38345 -8.80595 -7.87844 -7.44441 -6.48634 -6.32542 -4.41257 2.90612 3.12945 3.16585 3.28506 3.34096 4.01018 4.09010 4.37140 4.60300 4.66097 4.72372 4.85208 4.88332 4.95057 5.12382 5.28592 5.44878 5.46575 5.55916 5.61946 5.69027 5.73957 5.78219 5.86550 5.92199 5.97487 6.03725 6.12923 6.15434 6.20010 6.22129 6.25544 6.41595 6.44865 6.65447 6.91783 6.94909 7.00985 7.28513 7.57787 7.65693 7.87113 7.97782 8.22348 8.42380 8.74342 8.85205 9.16909 10.27464 10.43746 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.023168 B = 0.003678 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.288540 B = 7610.790665 C = 8460.167558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C -0.159 4.159 4 C 0.123 3.877 5 H 0.099 0.901 6 O -0.557 6.557 7 C -0.102 4.102 8 C -0.159 4.159 9 C -0.143 4.143 10 C 0.156 3.844 11 N -0.736 5.736 12 C 0.412 3.588 13 C -0.364 4.364 14 C -0.032 4.032 15 C -0.318 4.318 16 C 0.297 3.703 17 C -0.440 4.440 18 H 0.083 0.917 19 C 0.076 3.924 20 N -0.722 5.722 21 Si 0.904 3.096 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.262 1.262 25 N -0.537 5.537 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.370 0.630 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.056 0.944 42 H 0.393 0.607 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.078 6.311 -7.104 16.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C -0.216 4.216 4 C 0.063 3.937 5 H 0.117 0.883 6 O -0.366 6.366 7 C -0.103 4.103 8 C -0.216 4.216 9 C -0.200 4.200 10 C 0.030 3.970 11 N -0.374 5.374 12 C 0.172 3.828 13 C -0.390 4.390 14 C -0.056 4.056 15 C -0.341 4.341 16 C 0.170 3.830 17 C -0.472 4.472 18 H 0.101 0.899 19 C -0.148 4.148 20 N -0.344 5.344 21 Si 0.728 3.272 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.186 1.186 25 N -0.259 5.259 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.221 0.779 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.229 0.771 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.086 6.338 -7.667 16.438 hybrid contribution 0.783 0.063 0.128 0.796 sum -12.303 6.401 -7.539 15.785 Atomic orbital electron populations 1.21804 0.94813 1.01742 1.01686 1.21860 0.96410 0.97139 0.99483 1.22297 1.01564 0.95833 1.01905 1.21925 0.92239 0.95113 0.84375 0.88280 1.86605 1.76689 1.30324 1.43014 1.21390 0.95824 0.96597 0.96466 1.22387 1.01913 0.95407 1.01879 1.21944 1.02495 1.00363 0.95231 1.20975 0.81584 0.97533 0.96867 1.44203 1.04370 1.56221 1.32591 1.18484 0.89882 0.87891 0.86537 1.20623 0.97972 1.15706 1.04730 1.20607 0.94150 0.95140 0.95722 1.21534 0.94082 1.13433 1.05080 1.18157 0.93043 0.85912 0.85861 1.19544 0.90686 1.18955 1.18041 0.89931 1.25996 1.00012 0.94018 0.94808 1.70067 1.36429 1.11101 1.16799 0.86386 0.82567 0.78549 0.79669 1.19571 1.20324 1.18599 1.68090 1.03106 1.25019 1.29659 0.92164 0.93025 0.92853 0.89816 0.92863 0.92465 0.91329 0.77858 0.91293 0.91374 0.92762 0.92488 0.92310 0.91698 0.93410 0.92547 0.77073 0.89179 0.89010 0.88764 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.95 37.16 0.33 -0.85 16 2 C -0.13 -1.12 2.38 -90.62 -0.22 -1.33 16 3 C -0.16 -1.24 7.84 37.16 0.29 -0.95 16 4 C 0.12 1.30 2.26 -26.73 -0.06 1.24 16 5 H 0.10 1.09 8.13 -51.93 -0.42 0.67 16 6 O -0.56 -6.43 12.39 -35.23 -0.44 -6.87 16 7 C -0.10 -1.21 0.40 -154.50 -0.06 -1.27 16 8 C -0.16 -1.81 7.13 37.16 0.26 -1.54 16 9 C -0.14 -1.64 7.61 37.16 0.28 -1.36 16 10 C 0.16 2.50 3.68 -4.04 -0.01 2.48 16 11 N -0.74 -14.68 4.86 -60.40 -0.29 -14.98 16 12 C 0.41 10.23 7.65 -155.32 -1.19 9.05 16 13 C -0.36 -8.69 9.34 -38.87 -0.36 -9.06 16 14 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 15 C -0.32 -8.27 9.83 -38.65 -0.38 -8.65 16 16 C 0.30 8.44 6.51 -85.00 -0.55 7.89 16 17 C -0.44 -12.13 9.12 -37.74 -0.34 -12.47 16 18 H 0.08 2.14 7.86 -52.49 -0.41 1.73 16 19 C 0.08 1.98 5.46 -17.34 -0.09 1.89 16 20 N -0.72 -19.35 11.61 55.55 0.65 -18.71 16 21 Si 0.90 18.96 29.57 -169.99 -5.03 13.93 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 25 N -0.54 -15.04 8.05 -10.33 -0.08 -15.12 16 26 H 0.06 0.53 7.86 -51.93 -0.41 0.13 16 27 H 0.05 0.38 8.11 -51.93 -0.42 -0.05 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.70 5.95 -51.93 -0.31 0.39 16 30 H 0.05 0.38 7.85 -51.93 -0.41 -0.03 16 31 H 0.06 0.43 4.69 -51.93 -0.24 0.19 16 32 H 0.07 0.53 5.62 -51.93 -0.29 0.24 16 33 H 0.37 3.50 4.79 45.56 0.22 3.72 16 34 H 0.07 0.98 6.54 -51.93 -0.34 0.64 16 35 H 0.07 0.66 5.07 -51.93 -0.26 0.40 16 36 H 0.05 0.55 4.91 -51.93 -0.25 0.29 16 37 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 38 H 0.06 0.56 6.16 -51.93 -0.32 0.24 16 39 H 0.06 0.86 6.86 -51.93 -0.36 0.51 16 40 H 0.05 0.79 7.93 -51.93 -0.41 0.38 16 41 H 0.06 0.97 7.67 -51.93 -0.40 0.57 16 42 H 0.39 7.80 6.45 -40.82 -0.26 7.54 16 43 H 0.09 1.95 6.68 -52.49 -0.35 1.60 16 44 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 45 H 0.09 2.28 8.06 -52.49 -0.42 1.86 16 46 H 0.27 6.56 8.29 -40.82 -0.34 6.22 16 LS Contribution 345.93 15.07 5.21 5.21 Total: -1.00 -30.24 345.93 -8.97 -39.20 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -6.48 Total: 13.43 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -2.50 Total: -16.10 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.27 Total: -48.80 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.44 Total: -6.87 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.24 -8.97 -39.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342859992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.950 kcal (2) G-P(sol) polarization free energy of solvation -30.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds