Wall clock time and date at job start Tue Mar 31 2020 07:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46935 * 2 1 4 4 C 1.53002 * 109.46991 * 240.00511 * 2 1 3 5 5 C 1.50693 * 109.47401 * 120.00226 * 2 1 3 6 6 N 1.30258 * 125.61806 * 60.00161 * 5 2 1 7 7 C 1.34485 * 108.70349 * 179.97438 * 6 5 2 8 8 C 1.50690 * 126.16685 * 179.73948 * 7 6 5 9 9 N 1.46908 * 109.47105 * 274.99727 * 8 7 6 10 10 C 1.46852 * 110.99757 * 45.79163 * 9 8 7 11 11 C 1.53036 * 109.52277 * 185.84221 * 10 9 8 12 12 C 1.53125 * 109.27429 * 300.81996 * 11 10 9 13 13 C 1.50702 * 109.57158 * 177.59428 * 12 11 10 14 14 H 1.08003 * 119.99722 * 240.28579 * 13 12 11 15 15 C 1.37877 * 120.00264 * 60.28002 * 13 12 11 16 16 N 1.31512 * 119.99754 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99893 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47245 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47095 * 120.00739 * 17 15 13 20 20 H 1.48498 * 109.47096 * 240.00317 * 17 15 13 21 21 C 1.53121 * 109.16343 * 57.65771 * 12 11 10 22 22 C 1.46846 * 110.99984 * 170.00080 * 9 8 7 23 23 C 1.34334 * 107.66149 * 0.02562 * 7 6 5 24 24 O 1.33971 * 125.62211 * 239.95442 * 5 2 1 25 25 H 1.09004 * 109.47415 * 299.99111 * 1 2 3 26 26 H 1.08997 * 109.47727 * 60.00070 * 1 2 3 27 27 H 1.09007 * 109.47385 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46967 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47356 * 300.00458 * 3 2 1 30 30 H 1.08999 * 109.46984 * 60.00531 * 3 2 1 31 31 H 1.08997 * 109.47237 * 299.99738 * 4 2 1 32 32 H 1.09000 * 109.47114 * 59.99656 * 4 2 1 33 33 H 1.08997 * 109.47067 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.47813 * 34.99843 * 8 7 6 35 35 H 1.09002 * 109.47349 * 155.00309 * 8 7 6 36 36 H 1.09003 * 109.46165 * 305.85552 * 10 9 8 37 37 H 1.08998 * 109.45965 * 65.82109 * 10 9 8 38 38 H 1.08996 * 109.50396 * 180.88056 * 11 10 9 39 39 H 1.08994 * 109.53679 * 60.77740 * 11 10 9 40 40 H 1.09000 * 109.52322 * 297.74743 * 12 11 10 41 41 H 0.97005 * 119.99694 * 179.97438 * 16 15 13 42 42 H 1.08992 * 109.50260 * 182.40442 * 21 12 11 43 43 H 1.09003 * 109.53146 * 62.29957 * 21 12 11 44 44 H 1.08994 * 109.46260 * 294.17454 * 22 9 8 45 45 H 1.09002 * 109.46240 * 54.16065 * 22 9 8 46 46 H 1.08001 * 126.43425 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 7 1.7861 -1.9504 1.5440 7 6 2.4000 -2.2311 2.7072 8 6 2.3706 -3.5518 3.4322 9 7 1.1671 -3.6230 4.2717 10 6 -0.0189 -3.1754 3.5302 11 6 -1.2227 -3.1242 4.4737 12 6 -1.4620 -4.5168 5.0638 13 6 -2.6094 -4.4614 6.0392 14 1 -2.4522 -4.7294 7.0736 15 6 -3.8598 -4.0684 5.6113 16 7 -4.0513 -3.7425 4.3516 17 14 -5.2821 -4.0005 6.8203 18 1 -4.8082 -4.4132 8.1658 19 1 -5.8104 -2.6142 6.8857 20 1 -6.3584 -4.9196 6.3707 21 6 -0.1955 -4.9798 5.7892 22 6 0.9785 -4.9771 4.8075 23 6 3.0388 -1.1199 3.1094 24 8 2.8065 -0.1710 2.1814 25 1 -0.3634 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6765 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7488 -1.2494 32 1 1.6765 -0.2073 -2.1393 33 1 3.1299 -0.7208 -1.2496 34 1 2.3557 -4.3647 2.7062 35 1 3.2572 -3.6416 4.0600 36 1 0.1631 -2.1823 3.1194 37 1 -0.2236 -3.8724 2.7176 38 1 -2.1061 -2.8070 3.9196 39 1 -1.0248 -2.4169 5.2790 40 1 -1.6990 -5.2162 4.2621 41 1 -4.9311 -3.4664 4.0505 42 1 -0.3452 -5.9881 6.1748 43 1 0.0195 -4.3022 6.6155 44 1 0.7690 -5.6657 3.9890 45 1 1.8847 -5.2925 5.3246 46 1 3.6282 -1.0084 4.0075 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354584231.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:06 Heat of formation + Delta-G solvation = 7.570901 kcal Electronic energy + Delta-G solvation = -24311.471438 eV Core-core repulsion = 21009.050959 eV Total energy + Delta-G solvation = -3302.420478 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.27000 -38.22825 -37.05911 -35.07314 -33.54100 -31.50283 -29.68968 -29.60558 -27.55467 -27.42208 -26.59664 -24.44635 -23.22444 -22.08224 -21.66940 -20.62826 -19.32774 -18.44394 -16.93723 -16.66465 -16.25845 -15.31591 -15.10228 -14.82882 -14.38533 -14.23280 -14.13205 -13.96290 -13.21506 -12.90712 -12.67972 -12.50668 -12.43523 -12.37045 -11.92257 -11.84192 -11.78311 -11.54065 -11.48314 -11.26987 -11.12678 -10.93047 -10.69711 -10.62839 -10.43444 -10.25669 -10.12805 -9.91583 -9.36909 -8.90388 -8.65923 -8.60832 -8.23529 -7.67739 -5.91362 -3.96744 1.59859 2.76770 2.80170 3.33526 3.41399 3.45596 3.90675 4.49447 4.59759 4.62180 4.69804 4.79202 4.99249 5.11476 5.36320 5.38702 5.44656 5.54750 5.55700 5.65654 5.67055 5.73774 5.76443 5.79825 5.87637 5.97189 5.98874 6.07524 6.12035 6.21052 6.21520 6.37980 6.40920 6.45901 6.70684 6.76128 6.93457 7.13835 7.22461 7.51391 7.67609 7.75123 7.88414 7.92135 8.11922 8.23789 8.54644 9.07297 9.67303 11.14742 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.018125 B = 0.004091 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.460632 B = 6842.285263 C = 7856.591091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.034 3.966 3 C -0.145 4.145 4 C -0.138 4.138 5 C 0.195 3.805 6 N -0.467 5.467 7 C 0.001 3.999 8 C 0.132 3.868 9 N -0.532 5.532 10 C 0.064 3.936 11 C -0.103 4.103 12 C 0.047 3.953 13 C -0.509 4.509 14 H 0.054 0.946 15 C 0.060 3.940 16 N -0.891 5.891 17 Si 0.888 3.112 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.105 4.105 22 C 0.061 3.939 23 C -0.069 4.069 24 O -0.204 6.204 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.023 0.977 38 H 0.090 0.910 39 H 0.039 0.961 40 H 0.020 0.980 41 H 0.258 0.742 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.025 0.975 45 H 0.058 0.942 46 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.888 7.744 -9.136 19.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.033 3.967 3 C -0.203 4.203 4 C -0.195 4.195 5 C -0.012 4.012 6 N -0.196 5.196 7 C -0.119 4.119 8 C 0.004 3.996 9 N -0.257 5.257 10 C -0.063 4.063 11 C -0.141 4.141 12 C 0.029 3.971 13 C -0.547 4.547 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.143 4.143 22 C -0.067 4.067 23 C -0.140 4.140 24 O -0.090 6.090 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.042 0.958 38 H 0.109 0.891 39 H 0.058 0.942 40 H 0.038 0.962 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.044 0.956 45 H 0.076 0.924 46 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 14.455 7.735 -9.213 18.806 hybrid contribution -0.470 -0.081 0.538 0.719 sum 13.986 7.654 -8.676 18.151 Atomic orbital electron populations 1.21911 0.91450 1.03934 1.02575 1.19067 0.96609 0.94203 0.86830 1.21902 1.01581 0.93877 1.02944 1.21882 1.01129 1.01401 0.95112 1.26155 0.93433 0.88931 0.92713 1.70356 1.21767 1.13517 1.13973 1.21586 0.98895 0.98006 0.93377 1.20381 0.95380 0.90158 0.93713 1.62240 1.02845 1.25032 1.35608 1.22251 0.90236 0.98497 0.95326 1.21657 0.95047 0.99926 0.97503 1.18694 0.90717 0.92886 0.94842 1.21254 0.93582 1.44384 0.95518 0.92739 1.24972 0.98621 0.95409 0.95039 1.69904 1.22415 1.46125 1.14597 0.86597 0.82632 0.77539 0.81582 1.19837 1.21132 1.21149 1.21667 0.95033 1.00009 0.97585 1.22129 0.99069 0.87792 0.97714 1.24712 1.06523 0.87160 0.95626 1.84411 1.54912 1.40813 1.28865 0.92004 0.91170 0.90834 0.92036 0.91141 0.91788 0.91087 0.91148 0.92467 0.93731 0.89819 0.92432 0.95839 0.89132 0.94221 0.96165 0.93222 0.93132 0.92519 0.95644 0.92378 0.76986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.46 37.16 0.31 -1.27 16 2 C 0.03 0.37 0.99 -155.66 -0.15 0.22 16 3 C -0.15 -1.27 8.02 37.16 0.30 -0.97 16 4 C -0.14 -1.29 8.46 37.16 0.31 -0.98 16 5 C 0.20 2.78 6.47 -12.95 -0.08 2.70 16 6 N -0.47 -7.70 10.04 -7.36 -0.07 -7.77 16 7 C 0.00 0.01 5.04 -82.81 -0.42 -0.41 16 8 C 0.13 2.06 5.82 -4.98 -0.03 2.03 16 9 N -0.53 -10.01 4.80 -236.11 -1.13 -11.14 16 10 C 0.06 1.39 4.89 -3.83 -0.02 1.37 16 11 C -0.10 -2.58 5.12 -26.65 -0.14 -2.72 16 12 C 0.05 1.22 2.16 -91.64 -0.20 1.02 16 13 C -0.51 -14.35 8.56 -34.44 -0.29 -14.64 16 14 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 15 C 0.06 1.71 5.31 -17.82 -0.09 1.61 16 16 N -0.89 -26.07 11.37 55.43 0.63 -25.44 16 17 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 C -0.11 -2.27 5.32 -26.65 -0.14 -2.41 16 22 C 0.06 1.12 5.42 -3.83 -0.02 1.10 16 23 C -0.07 -0.94 12.08 29.35 0.35 -0.58 16 24 O -0.20 -2.85 10.17 5.37 0.05 -2.80 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.04 0.71 8.08 -51.93 -0.42 0.29 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 1.25 5.79 -51.93 -0.30 0.95 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 2.52 6.18 -51.93 -0.32 2.20 16 39 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.92 8.12 -51.93 -0.42 0.49 16 46 H 0.21 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 361.93 15.07 5.45 5.45 Total: -1.00 -31.14 361.93 -8.59 -39.73 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -8.19 Total: -0.78 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -0.31 Total: -13.93 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -0.58 Total: -44.35 kcal Atomic # 8 Polarization: -2.85 SS G_CDS: 0.05 Total: -2.80 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.14 -8.59 -39.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354584231.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.297 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds