Wall clock time and date at job start Tue Mar 31 2020 07:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47590 * 2 1 4 4 C 1.53004 * 109.47180 * 239.99595 * 2 1 3 5 5 C 1.47205 * 109.47385 * 120.00109 * 2 1 3 6 6 C 2.64605 * 109.47154 * 119.99849 * 2 1 3 7 7 C 4.07810 * 109.47259 * 119.99957 * 2 1 3 8 8 O 1.21621 * 119.99268 * 225.45908 * 7 6 5 9 9 N 1.34769 * 120.00325 * 45.46498 * 7 6 5 10 10 C 1.46503 * 120.00014 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46978 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.58521 * 59.64127 * 11 10 9 13 13 C 1.53194 * 109.58722 * 179.97438 * 11 10 9 14 14 C 1.53035 * 109.31479 * 174.56534 * 13 11 10 15 15 C 1.53035 * 109.52641 * 298.64111 * 14 13 11 16 16 C 1.53161 * 109.33069 * 61.37422 * 15 14 13 17 17 N 1.46925 * 109.70461 * 299.28211 * 11 10 9 18 18 C 1.36938 * 120.63083 * 6.56149 * 17 11 10 19 19 H 1.07999 * 119.99895 * 328.31797 * 18 17 11 20 20 C 1.38817 * 120.00259 * 148.32140 * 18 17 11 21 21 N 1.31618 * 119.99518 * 345.40137 * 20 18 17 22 22 Si 1.86796 * 119.99923 * 165.39729 * 20 18 17 23 23 H 1.48500 * 109.47233 * 60.00598 * 22 20 18 24 24 H 1.48500 * 109.46838 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47462 * 299.99873 * 22 20 18 26 26 H 1.09007 * 109.47135 * 299.99690 * 1 2 3 27 27 H 1.08994 * 109.47180 * 60.00218 * 1 2 3 28 28 H 1.09000 * 109.47496 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47477 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46372 * 300.00096 * 3 2 1 31 31 H 1.08994 * 109.46825 * 59.99769 * 3 2 1 32 32 H 1.08997 * 109.47259 * 300.00056 * 4 2 1 33 33 H 1.09000 * 109.46605 * 60.00345 * 4 2 1 34 34 H 1.08997 * 109.47270 * 180.02562 * 4 2 1 35 35 H 0.97008 * 120.00013 * 359.97438 * 9 7 6 36 36 H 1.09000 * 109.46871 * 59.99673 * 10 9 7 37 37 H 1.08998 * 109.46640 * 299.99541 * 10 9 7 38 38 H 1.09001 * 109.49438 * 54.61149 * 13 11 10 39 39 H 1.09005 * 109.52012 * 294.53462 * 13 11 10 40 40 H 1.09005 * 109.45994 * 58.65533 * 14 13 11 41 41 H 1.08996 * 109.46242 * 178.62798 * 14 13 11 42 42 H 1.09006 * 109.49933 * 181.31053 * 15 14 13 43 43 H 1.09004 * 109.49874 * 301.40448 * 15 14 13 44 44 H 1.09003 * 109.59059 * 185.57208 * 16 15 14 45 45 H 1.08997 * 109.71351 * 65.20657 * 16 15 14 46 46 H 0.97002 * 119.99566 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 2.0207 -0.6939 1.2019 6 6 2.4120 -1.2473 2.1605 7 6 2.8894 -1.9224 3.3297 8 8 3.3414 -1.2819 4.2596 9 7 2.8379 -3.2673 3.3996 10 6 3.3269 -3.9579 4.5956 11 6 3.1550 -5.4679 4.4186 12 1 3.7180 -5.8000 3.5464 13 6 3.6661 -6.1928 5.6676 14 6 3.3681 -7.6886 5.5423 15 6 1.8559 -7.9024 5.4443 16 6 1.3242 -7.1973 4.1929 17 7 1.7322 -5.7866 4.2372 18 6 0.8042 -4.7877 4.1098 19 1 0.9516 -3.8458 4.6172 20 6 -0.3261 -4.9858 3.3287 21 7 -0.3766 -5.9983 2.4893 22 14 -1.7752 -3.8155 3.4689 23 1 -1.3360 -2.4400 3.1219 24 1 -2.8487 -4.2429 2.5361 25 1 -2.2932 -3.8335 4.8605 26 1 -0.3634 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6766 -1.7490 -1.2492 33 1 1.6766 -0.2075 -2.1392 34 1 3.1299 -0.7218 -1.2490 35 1 2.4772 -3.7781 2.6580 36 1 2.7578 -3.6270 5.4643 37 1 4.3819 -3.7267 4.7427 38 1 3.1650 -5.7947 6.5499 39 1 4.7417 -6.0427 5.7613 40 1 3.8491 -8.0809 4.6462 41 1 3.7525 -8.2102 6.4187 42 1 1.6428 -8.9694 5.3784 43 1 1.3718 -7.4882 6.3288 44 1 0.2364 -7.2625 4.1711 45 1 1.7365 -7.6698 3.3014 46 1 -1.1663 -6.1366 1.9432 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752819552.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:19 Heat of formation + Delta-G solvation = 14.338086 kcal Electronic energy + Delta-G solvation = -24136.468270 eV Core-core repulsion = 20834.341239 eV Total energy + Delta-G solvation = -3302.127031 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.19519 -37.72565 -37.40455 -34.17356 -33.07507 -32.05104 -30.59351 -29.92643 -27.38875 -27.34313 -26.26788 -25.02228 -22.96025 -22.14318 -20.80054 -20.34450 -19.18197 -17.98392 -16.35637 -15.78793 -15.63385 -15.45962 -14.52964 -14.31491 -14.23223 -14.05033 -13.77794 -13.56756 -13.39466 -12.85592 -12.53556 -12.51014 -12.42681 -12.07198 -11.81329 -11.77294 -11.76654 -11.34111 -11.27044 -11.20463 -10.96363 -10.78472 -10.58416 -10.31536 -10.17013 -10.12979 -10.01258 -9.98732 -9.71255 -9.51596 -9.36252 -8.60265 -8.27708 -6.67044 -5.86273 -3.32599 2.03842 2.68680 3.33981 3.38479 3.43024 3.63740 4.03455 4.42154 4.51977 4.87806 4.89132 5.01944 5.21417 5.30885 5.49200 5.49419 5.54442 5.57984 5.63845 5.67016 5.68019 5.76198 5.79403 5.94535 5.96883 6.01601 6.08498 6.13615 6.20324 6.23881 6.30032 6.35169 6.39980 6.58238 6.69525 6.71866 6.83947 6.95249 7.09560 7.35769 7.59967 7.61945 7.77776 8.18294 8.39106 8.76180 9.14612 9.75904 10.34369 11.20610 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.015109 B = 0.005116 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.811887 B = 5471.873825 C = 6530.579431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.041 3.959 3 C -0.140 4.140 4 C -0.141 4.141 5 C -0.093 4.093 6 C -0.200 4.200 7 C 0.623 3.377 8 O -0.551 6.551 9 N -0.678 5.678 10 C 0.134 3.866 11 C 0.160 3.840 12 H 0.033 0.967 13 C -0.127 4.127 14 C -0.107 4.107 15 C -0.144 4.144 16 C 0.174 3.826 17 N -0.588 5.588 18 C -0.254 4.254 19 H 0.068 0.932 20 C 0.011 3.989 21 N -0.898 5.898 22 Si 0.891 3.109 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.283 1.283 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.418 0.582 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.044 0.956 42 H 0.046 0.954 43 H 0.053 0.947 44 H 0.082 0.918 45 H 0.019 0.981 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.955 5.157 -4.618 8.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.041 3.959 3 C -0.197 4.197 4 C -0.198 4.198 5 C -0.096 4.096 6 C -0.203 4.203 7 C 0.409 3.591 8 O -0.432 6.432 9 N -0.327 5.327 10 C 0.010 3.990 11 C 0.053 3.947 12 H 0.050 0.950 13 C -0.167 4.167 14 C -0.145 4.145 15 C -0.183 4.183 16 C 0.049 3.951 17 N -0.312 5.312 18 C -0.384 4.384 19 H 0.086 0.914 20 C -0.188 4.188 21 N -0.541 5.541 22 Si 0.720 3.280 23 H -0.206 1.206 24 H -0.216 1.216 25 H -0.210 1.210 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.257 0.743 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.100 0.900 45 H 0.037 0.963 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.135 5.509 -4.075 8.563 hybrid contribution -1.117 0.219 -0.209 1.158 sum 4.018 5.728 -4.284 8.204 Atomic orbital electron populations 1.21907 0.92443 1.03256 1.02410 1.17838 0.95864 0.94103 0.88099 1.21896 1.01579 0.93780 1.02478 1.21894 1.01523 1.01001 0.95372 1.22342 0.95052 0.98047 0.94146 1.20932 1.03046 1.00497 0.95793 1.14727 0.78781 0.82307 0.83303 1.90781 1.47762 1.66721 1.37983 1.45889 1.60830 1.04988 1.21016 1.21374 0.97618 0.92067 0.87897 1.20738 0.88001 0.90911 0.95055 0.94979 1.21938 0.99144 0.96102 0.99493 1.21357 0.97257 0.95771 1.00095 1.22188 0.95208 0.99117 1.01824 1.20726 1.00256 0.82716 0.91398 1.44065 0.99890 1.02231 1.85039 1.19129 1.00153 0.95949 1.23168 0.91400 1.25064 0.99885 0.97884 0.96000 1.70004 1.28684 1.31119 1.24315 0.86542 0.82793 0.81021 0.77620 1.20620 1.21574 1.20961 0.92048 0.91402 0.91585 0.92081 0.91487 0.92022 0.91604 0.91453 0.92100 0.74344 0.91201 0.92235 0.92013 0.92964 0.92868 0.93677 0.93532 0.92796 0.89979 0.96319 0.93561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.43 37.15 0.31 -1.41 16 2 C 0.04 0.52 0.95 -157.30 -0.15 0.37 16 3 C -0.14 -1.45 8.43 37.16 0.31 -1.14 16 4 C -0.14 -1.51 8.43 37.16 0.31 -1.20 16 5 C -0.09 -1.57 11.77 -37.12 -0.44 -2.01 16 6 C -0.20 -3.90 13.61 -38.83 -0.53 -4.42 16 7 C 0.62 13.15 7.65 -14.34 -0.11 13.04 16 8 O -0.55 -12.86 17.09 5.26 0.09 -12.77 16 9 N -0.68 -13.75 3.88 -62.76 -0.24 -14.00 16 10 C 0.13 2.57 4.43 -4.04 -0.02 2.56 16 11 C 0.16 3.09 3.00 -67.60 -0.20 2.89 16 12 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 13 C -0.13 -2.12 5.37 -26.61 -0.14 -2.26 16 14 C -0.11 -1.74 5.88 -26.70 -0.16 -1.90 16 15 C -0.14 -2.66 6.08 -26.63 -0.16 -2.82 16 16 C 0.17 3.92 5.27 -3.73 -0.02 3.90 16 17 N -0.59 -13.46 2.97 -164.80 -0.49 -13.95 16 18 C -0.25 -6.41 6.98 -15.06 -0.11 -6.52 16 19 H 0.07 1.77 5.91 -52.49 -0.31 1.46 16 20 C 0.01 0.30 4.95 -17.43 -0.09 0.21 16 21 N -0.90 -24.36 11.31 55.49 0.63 -23.74 16 22 Si 0.89 21.33 29.58 -169.99 -5.03 16.30 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.42 8.87 7.41 -40.82 -0.30 8.56 16 36 H 0.07 1.45 7.39 -51.93 -0.38 1.07 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.08 2.08 6.26 -51.93 -0.32 1.76 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 369.20 15.07 5.56 5.56 Total: -1.00 -28.93 369.20 -8.72 -37.66 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -8.07 Total: 5.65 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -1.18 Total: -0.72 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: -0.10 Total: -51.68 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.09 Total: -12.77 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.93 -8.72 -37.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752819552.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.996 kcal (2) G-P(sol) polarization free energy of solvation -28.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds