Wall clock time and date at job start Tue Mar 31 2020 08:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32867 * 1 3 3 C 1.47112 * 120.00500 * 2 1 4 4 C 1.50699 * 120.00029 * 0.02562 * 3 2 1 5 5 C 1.32867 * 120.00500 * 179.97438 * 3 2 1 6 6 C 1.50698 * 120.00712 * 174.08803 * 5 3 2 7 7 C 1.50697 * 109.47238 * 236.33868 * 6 5 3 8 8 O 1.21282 * 119.99892 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99995 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00057 * 184.95976 * 9 7 6 11 11 C 1.52996 * 109.47448 * 296.40266 * 10 9 7 12 12 C 1.53008 * 109.46555 * 56.40359 * 10 9 7 13 13 N 1.46494 * 109.47221 * 60.00072 * 12 10 9 14 14 C 1.36943 * 119.99528 * 179.97438 * 13 12 10 15 15 H 1.07996 * 120.00303 * 0.02562 * 14 13 12 16 16 C 1.38820 * 119.99693 * 179.97438 * 14 13 12 17 17 N 1.31621 * 119.99725 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99775 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47369 * 90.00182 * 18 16 14 20 20 H 1.48497 * 109.46855 * 210.00110 * 18 16 14 21 21 H 1.48503 * 109.47152 * 329.99759 * 18 16 14 22 22 C 1.52998 * 109.47158 * 176.39841 * 10 9 7 23 23 C 1.52997 * 117.49821 * 133.81428 * 22 10 9 24 24 C 1.52997 * 117.49671 * 65.19218 * 22 10 9 25 25 H 1.08001 * 119.99449 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00828 * 179.97438 * 1 2 3 27 27 H 1.08007 * 119.99836 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47436 * 264.76093 * 4 3 2 29 29 H 1.09010 * 109.46965 * 24.75601 * 4 3 2 30 30 H 1.08999 * 109.47885 * 144.75573 * 4 3 2 31 31 H 1.08009 * 119.99804 * 354.08521 * 5 3 2 32 32 H 1.09002 * 109.47445 * 116.33203 * 6 5 3 33 33 H 1.09007 * 109.46506 * 356.33510 * 6 5 3 34 34 H 0.97000 * 120.00139 * 4.95994 * 9 7 6 35 35 H 1.08996 * 109.47031 * 299.99782 * 11 10 9 36 36 H 1.09001 * 109.47203 * 179.97438 * 11 10 9 37 37 H 1.09004 * 109.46751 * 59.99613 * 11 10 9 38 38 H 1.09001 * 109.46851 * 179.97438 * 12 10 9 39 39 H 1.09000 * 109.47147 * 299.99367 * 12 10 9 40 40 H 0.96989 * 120.00522 * 359.97438 * 13 12 10 41 41 H 0.97002 * 119.99538 * 180.02562 * 17 16 14 42 42 H 1.08999 * 115.55209 * 279.52362 * 22 10 9 43 43 H 1.09004 * 117.49935 * 0.02562 * 23 22 10 44 44 H 1.09000 * 117.49889 * 145.02086 * 23 22 10 45 45 H 1.09002 * 117.50123 * 214.97499 * 24 22 10 46 46 H 1.09001 * 117.50065 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3110 2.5791 0.0006 5 6 3.3930 1.2740 0.0005 6 6 4.1467 2.5720 -0.1339 7 6 5.0804 2.4909 -1.3140 8 8 5.1293 1.4785 -1.9801 9 7 5.8610 3.5434 -1.6293 10 6 6.6878 3.5061 -2.8381 11 6 7.7258 2.3892 -2.7118 12 6 5.7994 3.2415 -4.0555 13 7 4.8055 4.3109 -4.1764 14 6 3.8955 4.2873 -5.1995 15 1 3.9103 3.4802 -5.9169 16 6 2.9534 5.3004 -5.3138 17 7 2.9351 6.2838 -4.4392 18 14 1.7116 5.2679 -6.7089 19 1 0.4991 4.5284 -6.2753 20 1 1.3395 6.6586 -7.0728 21 1 2.3092 4.5908 -7.8878 22 6 7.4013 4.8486 -3.0096 23 6 8.8933 4.8176 -3.3472 24 6 8.4335 5.2403 -1.9504 25 1 -0.5399 0.9354 -0.0004 26 1 -0.5401 -0.9352 -0.0004 27 1 1.8687 -0.9354 -0.0004 28 1 1.2102 2.9410 -1.0226 29 1 0.3212 2.4271 0.4313 30 1 1.8563 3.3133 0.5935 31 1 3.9330 0.3436 0.0973 32 1 4.7228 2.7533 0.7735 33 1 3.4403 3.3883 -0.2849 34 1 5.8754 4.3256 -1.0558 35 1 8.3586 2.5777 -1.8446 36 1 8.3407 2.3612 -3.6115 37 1 7.2174 1.4328 -2.5897 38 1 6.4145 3.2142 -4.9550 39 1 5.2911 2.2850 -3.9334 40 1 4.7920 5.0356 -3.5320 41 1 2.2765 6.9915 -4.5189 42 1 6.8023 5.6467 -3.4480 43 1 9.3664 3.8407 -3.4475 44 1 9.2760 5.5954 -4.0079 45 1 8.5140 6.2962 -1.6923 46 1 8.6040 4.5418 -1.1312 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753520901.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:37 Heat of formation + Delta-G solvation = 33.689715 kcal Electronic energy + Delta-G solvation = -24229.589576 eV Core-core repulsion = 20928.301695 eV Total energy + Delta-G solvation = -3301.287881 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -40.02195 -37.96596 -36.60304 -34.59427 -33.37009 -32.42095 -31.08001 -29.72592 -28.36434 -26.42621 -25.74091 -23.60710 -22.36615 -22.02061 -21.26157 -19.64775 -18.72151 -17.67690 -17.14214 -17.05164 -16.03680 -15.60592 -15.15068 -14.53951 -14.47992 -14.23203 -13.91547 -13.43987 -13.24021 -13.02966 -12.85260 -12.53145 -12.30950 -12.23975 -12.02500 -11.85969 -11.53871 -11.36348 -11.19079 -10.99836 -10.79307 -10.76985 -10.71131 -10.69686 -10.36683 -10.15345 -10.05902 -9.77527 -9.62592 -9.21248 -8.73278 -8.49354 -8.04966 -6.79535 -5.70636 -2.96044 1.47117 3.06259 3.21161 3.47375 3.52746 3.54020 3.57501 4.17189 4.65699 4.81182 4.83612 4.99601 5.11059 5.14068 5.23044 5.35404 5.37872 5.46660 5.51701 5.54180 5.60997 5.65394 5.70131 5.77148 5.85016 5.93016 5.99882 6.01612 6.09688 6.20843 6.25682 6.29274 6.32313 6.47849 6.48534 6.59386 6.64255 6.74676 6.82995 6.97969 7.08458 7.20615 7.78210 8.02925 8.49373 8.75484 9.60851 10.19452 10.55765 11.52637 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.008750 B = 0.006545 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3199.344855 B = 4277.317441 C = 6718.744347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.110 4.110 3 C -0.108 4.108 4 C -0.124 4.124 5 C -0.115 4.115 6 C -0.119 4.119 7 C 0.528 3.472 8 O -0.534 6.534 9 N -0.713 5.713 10 C 0.202 3.798 11 C -0.162 4.162 12 C 0.142 3.858 13 N -0.725 5.725 14 C -0.227 4.227 15 H 0.068 0.932 16 C -0.016 4.016 17 N -0.937 5.937 18 Si 0.903 3.097 19 H -0.291 1.291 20 H -0.293 1.293 21 H -0.283 1.283 22 C -0.148 4.148 23 C -0.173 4.173 24 C -0.184 4.184 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.112 0.888 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.396 0.604 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.022 0.978 39 H 0.048 0.952 40 H 0.382 0.618 41 H 0.252 0.748 42 H 0.121 0.879 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.045 -5.954 12.373 15.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.128 4.128 3 C -0.108 4.108 4 C -0.181 4.181 5 C -0.134 4.134 6 C -0.159 4.159 7 C 0.314 3.686 8 O -0.411 6.411 9 N -0.364 5.364 10 C 0.117 3.883 11 C -0.220 4.220 12 C 0.014 3.986 13 N -0.369 5.369 14 C -0.358 4.358 15 H 0.086 0.914 16 C -0.211 4.211 17 N -0.587 5.587 18 Si 0.735 3.265 19 H -0.219 1.219 20 H -0.219 1.219 21 H -0.209 1.209 22 C -0.167 4.167 23 C -0.211 4.211 24 C -0.221 4.221 25 H 0.120 0.880 26 H 0.116 0.884 27 H 0.130 0.870 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.132 0.868 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.229 0.771 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.040 0.960 39 H 0.066 0.934 40 H 0.216 0.784 41 H 0.062 0.938 42 H 0.139 0.861 43 H 0.117 0.883 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.983 -6.734 11.713 14.776 hybrid contribution -0.773 0.748 -0.415 1.153 sum 5.209 -5.986 11.297 13.806 Atomic orbital electron populations 1.24381 0.95773 1.01886 1.01046 1.21840 0.95263 0.96043 0.99660 1.20544 0.93998 0.94312 1.01992 1.20908 0.99712 0.94363 1.03087 1.22690 0.93824 0.97555 0.99284 1.20813 0.98825 0.98710 0.97520 1.20215 0.79833 0.83129 0.85418 1.90620 1.67096 1.30854 1.52494 1.45919 1.45059 1.19089 1.26320 1.19995 0.90014 0.92680 0.85627 1.22275 0.98392 1.00178 1.01153 1.21076 0.90943 0.93961 0.92613 1.42228 1.35505 1.25889 1.33312 1.19243 1.07231 1.05677 1.03697 0.91449 1.24651 0.99791 0.97594 0.99108 1.69648 1.38230 1.13364 1.37443 0.86230 0.81758 0.76528 0.81996 1.21901 1.21903 1.20868 1.22564 0.91503 0.99056 1.03567 1.23039 0.96663 1.03047 0.98319 1.22937 1.04844 1.01575 0.92705 0.87997 0.88402 0.87035 0.90629 0.91846 0.91444 0.86777 0.88713 0.87676 0.77051 0.93060 0.91793 0.90483 0.96029 0.93426 0.78420 0.93789 0.86075 0.88307 0.88949 0.89003 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.24 14.12 28.88 0.41 -1.83 16 2 C -0.11 -1.42 9.83 -37.83 -0.37 -1.79 16 3 C -0.11 -1.52 5.98 -102.87 -0.62 -2.14 16 4 C -0.12 -1.66 8.55 36.01 0.31 -1.35 16 5 C -0.12 -1.63 8.45 -36.16 -0.31 -1.94 16 6 C -0.12 -1.61 5.81 -29.04 -0.17 -1.78 16 7 C 0.53 8.92 7.23 -10.99 -0.08 8.84 16 8 O -0.53 -10.83 12.27 5.56 0.07 -10.77 16 9 N -0.71 -11.11 4.74 -47.61 -0.23 -11.33 16 10 C 0.20 3.37 0.54 -131.82 -0.07 3.30 16 11 C -0.16 -2.39 7.11 37.16 0.26 -2.13 16 12 C 0.14 3.09 4.91 -4.04 -0.02 3.07 16 13 N -0.73 -18.47 5.05 -59.91 -0.30 -18.77 16 14 C -0.23 -6.53 9.99 -15.05 -0.15 -6.68 16 15 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 16 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 17 N -0.94 -28.11 13.06 55.49 0.72 -27.38 16 18 Si 0.90 23.01 29.55 -169.99 -5.02 17.99 16 19 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 20 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 21 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 22 C -0.15 -2.26 4.85 -90.62 -0.44 -2.70 16 23 C -0.17 -2.20 9.65 -26.73 -0.26 -2.46 16 24 C -0.18 -2.18 9.77 -26.73 -0.26 -2.44 16 25 H 0.10 1.14 6.05 -52.49 -0.32 0.83 16 26 H 0.10 0.95 8.06 -52.49 -0.42 0.52 16 27 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.06 0.74 6.18 -51.92 -0.32 0.42 16 30 H 0.07 0.80 6.68 -51.93 -0.35 0.45 16 31 H 0.11 1.58 8.05 -52.48 -0.42 1.16 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.11 1.46 5.74 -51.92 -0.30 1.16 16 34 H 0.40 5.28 8.42 -40.82 -0.34 4.94 16 35 H 0.05 0.66 6.96 -51.93 -0.36 0.30 16 36 H 0.06 0.88 6.74 -51.93 -0.35 0.53 16 37 H 0.08 1.29 6.27 -51.93 -0.33 0.97 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.05 1.16 6.08 -51.93 -0.32 0.85 16 40 H 0.38 9.92 6.61 -40.82 -0.27 9.65 16 41 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.12 2.23 7.08 -51.93 -0.37 1.86 16 43 H 0.10 1.17 5.89 -51.93 -0.31 0.87 16 44 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.09 1.00 7.28 -51.93 -0.38 0.62 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -32.55 365.29 -8.34 -40.89 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: -7.23 Total: 16.47 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -1.86 Total: -12.60 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.20 Total: -57.49 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.07 Total: -10.77 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.55 -8.34 -40.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753520901.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.581 kcal (2) G-P(sol) polarization free energy of solvation -32.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds