Wall clock time and date at job start Tue Mar 31 2020 08:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32874 * 1 3 3 C 1.47112 * 120.00093 * 2 1 4 4 C 1.50696 * 120.00085 * 359.97438 * 3 2 1 5 5 C 1.32870 * 119.99845 * 179.97438 * 3 2 1 6 6 C 1.50700 * 119.99912 * 174.03432 * 5 3 2 7 7 C 1.50699 * 109.47388 * 234.59872 * 6 5 3 8 8 O 1.21285 * 119.99883 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00118 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99890 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47091 * 175.38022 * 10 9 7 12 12 N 1.46509 * 110.05315 * 57.75615 * 11 10 9 13 13 C 1.36939 * 120.00112 * 58.66972 * 12 11 10 14 14 H 1.08002 * 120.00065 * 5.15841 * 13 12 11 15 15 C 1.38807 * 119.99721 * 185.16193 * 13 12 11 16 16 N 1.31622 * 119.99458 * 180.02562 * 15 13 12 17 17 Si 1.86793 * 120.00229 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47036 * 90.00471 * 17 15 13 19 19 H 1.48504 * 109.47513 * 210.00187 * 17 15 13 20 20 H 1.48502 * 109.47538 * 330.00293 * 17 15 13 21 21 C 1.53869 * 110.03557 * 296.33774 * 11 10 9 22 22 C 1.54265 * 106.59928 * 240.71389 * 21 11 10 23 23 C 1.54886 * 104.19598 * 336.39003 * 22 21 11 24 24 C 1.54270 * 110.03334 * 179.16631 * 11 10 9 25 25 H 1.07998 * 120.00274 * 179.97438 * 1 2 3 26 26 H 1.07994 * 119.99751 * 0.02562 * 1 2 3 27 27 H 1.08006 * 119.99550 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.46994 * 265.34626 * 4 3 2 29 29 H 1.09002 * 109.47471 * 25.34150 * 4 3 2 30 30 H 1.09002 * 109.47162 * 145.34453 * 4 3 2 31 31 H 1.08004 * 120.00136 * 354.03615 * 5 3 2 32 32 H 1.09006 * 109.47042 * 114.59859 * 6 5 3 33 33 H 1.09004 * 109.47143 * 354.59786 * 6 5 3 34 34 H 0.97001 * 120.00265 * 359.97438 * 9 7 6 35 35 H 1.09008 * 109.47063 * 55.38431 * 10 9 7 36 36 H 1.08996 * 109.46796 * 295.38311 * 10 9 7 37 37 H 0.97001 * 119.99727 * 238.67305 * 12 11 10 38 38 H 0.97002 * 119.99715 * 179.97438 * 16 15 13 39 39 H 1.09000 * 110.02990 * 359.97438 * 21 11 10 40 40 H 1.09005 * 110.03399 * 121.42832 * 21 11 10 41 41 H 1.09004 * 110.48772 * 95.06730 * 22 21 11 42 42 H 1.09001 * 110.48464 * 217.71271 * 22 21 11 43 43 H 1.09007 * 110.75496 * 279.62712 * 23 22 21 44 44 H 1.08997 * 110.75761 * 156.25870 * 23 22 21 45 45 H 1.08998 * 110.48810 * 261.58001 * 24 11 10 46 46 H 1.09001 * 110.48244 * 24.22325 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3109 2.5791 -0.0006 5 6 3.3930 1.2740 0.0005 6 6 4.1466 2.5719 -0.1351 7 6 5.1110 2.4747 -1.2890 8 8 5.1794 1.4522 -1.9377 9 7 5.8976 3.5240 -1.6001 10 6 6.8348 3.4296 -2.7222 11 6 7.5170 4.7829 -2.9321 12 7 8.2059 5.1937 -1.7061 13 6 9.1807 4.3963 -1.1684 14 1 9.5001 3.5069 -1.6912 15 6 9.7580 4.7310 0.0487 16 7 10.6953 3.9648 0.5653 17 14 9.2059 6.2696 0.9527 18 1 8.0808 5.9328 1.8615 19 1 10.3384 6.8107 1.7465 20 1 8.7596 7.2886 -0.0311 21 6 6.4749 5.8422 -3.3315 22 6 6.8837 6.3586 -4.7265 23 6 8.4016 6.0620 -4.8115 24 6 8.5228 4.6924 -4.0984 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5399 0.9353 -0.0004 27 1 1.8687 -0.9354 0.0004 28 1 1.2018 2.9352 -1.0250 29 1 0.3247 2.4296 0.4389 30 1 1.8611 3.3166 0.5838 31 1 3.9330 0.3437 0.0981 32 1 4.6984 2.7695 0.7840 33 1 3.4423 3.3836 -0.3177 34 1 5.8427 4.3419 -1.0815 35 1 6.2925 3.1520 -3.6262 36 1 7.5882 2.6729 -2.5036 37 1 7.9715 6.0306 -1.2753 38 1 11.0991 4.1989 1.4156 39 1 5.4832 5.3921 -3.3762 40 1 6.4817 6.6621 -2.6131 41 1 6.3454 5.8191 -5.5058 42 1 6.6993 7.4299 -4.8058 43 1 8.9743 6.8245 -4.2834 44 1 8.7228 5.9865 -5.8503 45 1 9.5344 4.5478 -3.7193 46 1 8.2491 3.8839 -4.7762 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753667357.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:07 Heat of formation + Delta-G solvation = -24.415907 kcal Electronic energy + Delta-G solvation = -23758.578338 eV Core-core repulsion = 20454.770808 eV Total energy + Delta-G solvation = -3303.807530 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.96348 -39.69637 -37.77653 -35.59355 -35.12069 -33.44895 -32.83364 -30.35811 -29.58932 -29.21893 -27.53187 -25.84205 -24.57342 -22.38944 -21.54526 -20.95102 -20.08626 -19.50151 -18.77528 -18.16143 -17.29067 -16.99059 -16.52467 -16.26439 -15.96907 -15.83293 -15.05715 -14.89073 -14.79187 -14.40662 -14.34289 -14.08864 -13.88878 -13.59447 -13.39487 -13.24539 -12.98865 -12.57171 -12.48558 -12.29665 -12.18530 -11.94716 -11.92491 -11.86913 -11.74319 -11.61788 -11.44933 -11.38694 -11.33646 -10.99399 -10.80262 -9.93581 -9.28240 -9.11371 -7.95378 -5.30088 0.43149 1.39813 1.44655 1.52046 1.71520 2.06510 2.50881 2.53196 3.33863 3.53628 3.74631 3.76366 3.86947 3.96408 4.04830 4.07816 4.31686 4.39461 4.43389 4.47289 4.55994 4.60042 4.64179 4.72613 4.80573 4.85771 4.90232 4.94591 5.00086 5.03373 5.09915 5.13541 5.17897 5.25916 5.36714 5.47388 5.48705 5.56058 5.59803 5.64777 5.79462 5.87656 6.04755 6.27684 6.68318 7.14721 7.34770 7.87940 8.08798 9.26567 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.013919 B = 0.004239 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.126563 B = 6603.507982 C = 7683.475876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.147 4.147 3 C -0.105 4.105 4 C -0.124 4.124 5 C -0.144 4.144 6 C -0.107 4.107 7 C 0.507 3.493 8 O -0.594 6.594 9 N -0.701 5.701 10 C 0.129 3.871 11 C 0.190 3.810 12 N -0.734 5.734 13 C -0.208 4.208 14 H 0.047 0.953 15 C -0.067 4.067 16 N -0.990 5.990 17 Si 0.955 3.045 18 H -0.275 1.275 19 H -0.308 1.308 20 H -0.246 1.246 21 C -0.121 4.121 22 C -0.112 4.112 23 C -0.114 4.114 24 C -0.134 4.134 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.106 0.894 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.131 0.869 34 H 0.408 0.592 35 H 0.066 0.934 36 H 0.021 0.979 37 H 0.368 0.632 38 H 0.254 0.746 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.055 0.945 44 H 0.076 0.924 45 H 0.042 0.958 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.880 4.452 -4.988 21.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C -0.105 4.105 4 C -0.180 4.180 5 C -0.162 4.162 6 C -0.146 4.146 7 C 0.295 3.705 8 O -0.476 6.476 9 N -0.351 5.351 10 C 0.003 3.997 11 C 0.100 3.900 12 N -0.378 5.378 13 C -0.340 4.340 14 H 0.065 0.935 15 C -0.258 4.258 16 N -0.641 5.641 17 Si 0.782 3.218 18 H -0.201 1.201 19 H -0.236 1.236 20 H -0.170 1.170 21 C -0.159 4.159 22 C -0.150 4.150 23 C -0.151 4.151 24 C -0.174 4.174 25 H 0.133 0.867 26 H 0.133 0.867 27 H 0.124 0.876 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.129 0.871 33 H 0.148 0.852 34 H 0.244 0.756 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.203 0.797 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.094 0.906 45 H 0.061 0.939 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.698 3.588 -5.427 21.697 hybrid contribution 1.019 0.318 1.185 1.595 sum -19.679 3.906 -4.242 20.507 Atomic orbital electron populations 1.24653 0.94923 1.03368 0.97582 1.21973 0.96224 0.95904 1.02368 1.20831 0.93460 0.95779 1.00402 1.20972 1.00714 0.93399 1.02928 1.22695 0.94572 0.97344 1.01604 1.20783 0.97888 0.99029 0.96921 1.21147 0.81287 0.82554 0.85516 1.90640 1.70729 1.31395 1.54812 1.45749 1.38632 1.16959 1.33725 1.21660 0.90774 0.98786 0.88526 1.20673 0.91312 0.91745 0.86289 1.42877 1.43490 1.23175 1.28243 1.18745 1.10874 1.03693 1.00645 0.93512 1.25491 0.99442 1.02064 0.98765 1.69919 1.31799 1.41652 1.20700 0.85426 0.77081 0.80341 0.78927 1.20061 1.23571 1.16995 1.22416 0.97859 0.97372 0.98209 1.22307 0.95010 1.01607 0.96058 1.22378 0.97172 0.95653 0.99915 1.22772 0.99246 0.98479 0.96953 0.86708 0.86651 0.87589 0.90867 0.89988 0.90172 0.88830 0.87102 0.85154 0.75561 0.91540 0.96092 0.79683 0.93769 0.90071 0.90827 0.90442 0.90067 0.92654 0.90568 0.93878 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 14.11 66.64 0.94 -1.65 16 2 C -0.15 -3.03 9.83 23.42 0.23 -2.80 16 3 C -0.10 -2.31 5.98 -18.71 -0.11 -2.43 16 4 C -0.12 -1.93 8.54 71.23 0.61 -1.32 16 5 C -0.14 -3.84 8.45 24.51 0.21 -3.64 16 6 C -0.11 -2.69 5.77 29.10 0.17 -2.52 16 7 C 0.51 17.40 7.82 87.66 0.69 18.08 16 8 O -0.59 -25.51 16.03 -3.04 -0.05 -25.56 16 9 N -0.70 -23.17 5.05 -463.05 -2.34 -25.50 16 10 C 0.13 4.74 4.04 86.38 0.35 5.08 16 11 C 0.19 6.41 0.68 4.32 0.00 6.41 16 12 N -0.73 -30.32 4.51 -300.06 -1.35 -31.67 16 13 C -0.21 -11.17 8.85 84.03 0.74 -10.42 16 14 H 0.05 2.89 7.44 -2.91 -0.02 2.87 16 15 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 16 N -0.99 -63.00 13.97 21.65 0.30 -62.69 16 17 Si 0.95 42.97 27.79 68.60 1.91 44.88 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.31 -14.65 7.11 99.48 0.71 -13.95 16 20 H -0.25 -9.60 6.45 99.48 0.64 -8.96 16 21 C -0.12 -2.97 5.87 31.32 0.18 -2.79 16 22 C -0.11 -2.37 6.83 31.67 0.22 -2.15 16 23 C -0.11 -2.97 6.91 31.88 0.22 -2.75 16 24 C -0.13 -4.53 5.94 31.67 0.19 -4.34 16 25 H 0.11 1.39 8.06 -2.91 -0.02 1.36 16 26 H 0.12 1.42 6.06 -2.91 -0.02 1.41 16 27 H 0.11 2.27 8.06 -2.91 -0.02 2.24 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.08 1.00 6.20 -2.39 -0.01 0.99 16 30 H 0.08 1.08 6.69 -2.39 -0.02 1.06 16 31 H 0.09 2.88 8.05 -2.91 -0.02 2.86 16 32 H 0.11 2.61 8.14 -2.38 -0.02 2.59 16 33 H 0.13 2.38 5.78 -2.38 -0.01 2.36 16 34 H 0.41 11.91 8.00 -92.71 -0.74 11.17 16 35 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 36 H 0.02 0.96 7.44 -2.39 -0.02 0.94 16 37 H 0.37 14.30 5.11 -92.71 -0.47 13.82 16 38 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 39 H 0.08 1.78 7.50 -2.39 -0.02 1.76 16 40 H 0.07 1.73 7.44 -2.38 -0.02 1.71 16 41 H 0.08 1.43 8.14 -2.38 -0.02 1.42 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.04 1.78 7.11 -2.39 -0.02 1.77 16 46 H 0.06 2.04 7.85 -2.39 -0.02 2.02 16 Total: -1.00 -73.31 365.24 3.26 -70.05 By element: Atomic # 1 Polarization: 41.37 SS G_CDS: -0.31 Total: 41.06 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 5.10 Total: -10.57 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -3.39 Total: -119.87 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.05 Total: -25.56 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.91 Total: 44.88 kcal Total: -73.31 3.26 -70.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753667357.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.636 kcal (2) G-P(sol) polarization free energy of solvation -73.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds