Wall clock time and date at job start Tue Mar 31 2020 08:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32868 * 1 3 3 C 1.47117 * 120.00218 * 2 1 4 4 C 1.50697 * 119.99965 * 5.02937 * 3 2 1 5 5 C 1.32870 * 119.99891 * 185.03634 * 3 2 1 6 6 C 1.50701 * 120.00394 * 6.62298 * 5 3 2 7 7 C 1.50694 * 109.47067 * 126.14387 * 6 5 3 8 8 O 1.21279 * 120.00053 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00076 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00482 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47349 * 174.93957 * 10 9 7 12 12 N 1.46504 * 110.05238 * 62.71583 * 11 10 9 13 13 C 1.36937 * 120.00386 * 54.02551 * 12 11 10 14 14 H 1.08000 * 119.99821 * 5.13705 * 13 12 11 15 15 C 1.38813 * 119.99682 * 185.14378 * 13 12 11 16 16 N 1.31616 * 120.00571 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99296 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46891 * 90.00349 * 17 15 13 19 19 H 1.48506 * 109.46545 * 209.99615 * 17 15 13 20 20 H 1.48496 * 109.47325 * 329.99509 * 17 15 13 21 21 C 1.53871 * 110.03498 * 301.30002 * 11 10 9 22 22 C 1.54272 * 106.59379 * 240.71608 * 21 11 10 23 23 C 1.54885 * 104.19806 * 336.38628 * 22 21 11 24 24 C 1.54265 * 110.03070 * 184.12612 * 11 10 9 25 25 H 1.07993 * 120.00133 * 180.02562 * 1 2 3 26 26 H 1.08004 * 119.99939 * 0.02562 * 1 2 3 27 27 H 1.08004 * 119.99939 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47367 * 270.00392 * 4 3 2 29 29 H 1.09002 * 109.46910 * 30.00482 * 4 3 2 30 30 H 1.09000 * 109.46719 * 150.00041 * 4 3 2 31 31 H 1.08003 * 119.99652 * 186.62801 * 5 3 2 32 32 H 1.09006 * 109.46576 * 6.14481 * 6 5 3 33 33 H 1.08996 * 109.47261 * 246.14977 * 6 5 3 34 34 H 0.97007 * 119.99848 * 359.97438 * 9 7 6 35 35 H 1.08997 * 109.46841 * 54.93925 * 10 9 7 36 36 H 1.09003 * 109.46702 * 294.94402 * 10 9 7 37 37 H 0.97000 * 119.99547 * 234.01895 * 12 11 10 38 38 H 0.96995 * 120.00287 * 180.02562 * 16 15 13 39 39 H 1.09004 * 110.02751 * 359.97438 * 21 11 10 40 40 H 1.08993 * 110.03739 * 121.42905 * 21 11 10 41 41 H 1.08999 * 110.48474 * 95.06994 * 22 21 11 42 42 H 1.09000 * 110.48285 * 217.70855 * 22 21 11 43 43 H 1.08998 * 110.75691 * 279.63018 * 23 22 21 44 44 H 1.08995 * 110.75749 * 156.26041 * 23 22 21 45 45 H 1.08996 * 110.49019 * 261.57083 * 24 11 10 46 46 H 1.08995 * 110.48888 * 24.22531 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3152 2.5766 0.1144 5 6 3.3892 1.2762 -0.1010 6 6 4.1269 -0.0111 -0.3651 7 6 5.0144 0.1570 -1.5714 8 8 5.0452 1.2177 -2.1585 9 7 5.7739 -0.8715 -1.9978 10 6 6.6371 -0.7081 -3.1702 11 6 7.4786 -1.9710 -3.3640 12 7 6.6080 -3.1187 -3.6310 13 6 5.6945 -3.0628 -4.6496 14 1 5.6717 -2.2071 -5.3082 15 6 4.7977 -4.1059 -4.8355 16 7 4.8257 -5.1489 -4.0332 17 14 3.5510 -4.0292 -6.2246 18 1 4.1328 -4.6411 -7.4462 19 1 2.3272 -4.7737 -5.8329 20 1 3.2018 -2.6122 -6.4988 21 6 8.3292 -2.2354 -2.1093 22 6 9.8042 -2.1895 -2.5593 23 6 9.7495 -2.5097 -4.0736 24 6 8.4662 -1.7738 -4.5326 25 1 -0.5400 -0.9352 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8687 -0.9353 0.0004 28 1 1.0565 2.9357 -0.8816 29 1 0.4044 2.4223 0.6929 30 1 1.9430 3.3139 0.6148 31 1 3.9374 2.2005 0.0063 32 1 3.4087 -0.8098 -0.5508 33 1 4.7365 -0.2650 0.5020 34 1 5.7495 -1.7199 -1.5280 35 1 7.2953 0.1476 -3.0201 36 1 6.0215 -0.5423 -4.0543 37 1 6.6788 -3.9182 -3.0864 38 1 4.1993 -5.8779 -4.1634 39 1 8.1428 -1.4636 -1.3625 40 1 8.0944 -3.2175 -1.6991 41 1 10.2226 -1.1966 -2.3941 42 1 10.3878 -2.9432 -2.0307 43 1 9.6589 -3.5834 -4.2384 44 1 10.6264 -2.1122 -4.5845 45 1 8.0735 -2.2242 -5.4441 46 1 8.6687 -0.7138 -4.6861 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753667358.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:16 Heat of formation + Delta-G solvation = -7.695681 kcal Electronic energy + Delta-G solvation = -23815.676653 eV Core-core repulsion = 20512.594166 eV Total energy + Delta-G solvation = -3303.082487 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.50740 -38.23068 -36.77813 -34.03917 -33.31188 -31.94404 -30.69750 -29.89701 -28.25612 -27.78448 -25.64315 -24.12773 -23.05714 -21.78883 -20.53032 -19.66121 -18.60139 -17.56725 -17.04242 -16.68186 -15.84414 -15.69946 -15.27768 -14.71379 -14.54011 -14.20259 -14.02349 -13.55749 -13.32498 -13.10824 -12.95819 -12.62361 -12.55812 -12.28918 -12.09536 -11.70442 -11.46493 -11.45554 -11.10874 -10.79311 -10.73313 -10.63725 -10.59213 -10.51661 -10.41178 -10.28023 -10.15146 -9.87598 -9.65665 -9.43399 -8.91307 -8.39769 -8.16614 -7.02104 -5.82170 -3.10997 1.38504 3.03015 3.12815 3.40812 3.47571 3.49193 3.83780 4.55758 4.72167 4.88274 5.06501 5.11038 5.11566 5.22605 5.26803 5.44943 5.52070 5.55909 5.59209 5.62580 5.69287 5.70199 5.77246 5.78625 5.94016 5.96750 6.00684 6.08615 6.17455 6.25857 6.31111 6.40239 6.44529 6.49219 6.56410 6.64063 6.74796 6.76838 6.81905 6.97771 7.00203 7.12506 7.69808 8.09629 8.36632 8.74467 9.48615 10.02721 10.38130 11.39872 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.011370 B = 0.004982 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.106655 B = 5618.737443 C = 7381.855505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.121 4.121 3 C -0.117 4.117 4 C -0.112 4.112 5 C -0.110 4.110 6 C -0.121 4.121 7 C 0.513 3.487 8 O -0.556 6.556 9 N -0.703 5.703 10 C 0.121 3.879 11 C 0.189 3.811 12 N -0.712 5.712 13 C -0.233 4.233 14 H 0.070 0.930 15 C -0.008 4.008 16 N -0.932 5.932 17 Si 0.900 3.100 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.282 1.282 21 C -0.126 4.126 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.133 4.133 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.119 0.881 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.118 0.882 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.403 0.597 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.384 0.616 38 H 0.254 0.746 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.077 0.923 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.148 8.935 9.897 13.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.139 4.139 3 C -0.117 4.117 4 C -0.169 4.169 5 C -0.128 4.128 6 C -0.161 4.161 7 C 0.298 3.702 8 O -0.435 6.435 9 N -0.353 5.353 10 C -0.005 4.005 11 C 0.097 3.903 12 N -0.353 5.353 13 C -0.364 4.364 14 H 0.087 0.913 15 C -0.204 4.204 16 N -0.580 5.580 17 Si 0.731 3.269 18 H -0.218 1.218 19 H -0.219 1.219 20 H -0.208 1.208 21 C -0.164 4.164 22 C -0.159 4.159 23 C -0.155 4.155 24 C -0.174 4.174 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.137 0.863 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.136 0.864 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.238 0.762 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.219 0.781 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.096 0.904 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.037 9.708 9.339 13.511 hybrid contribution -0.789 -0.832 -0.538 1.266 sum 0.249 8.876 8.801 12.502 Atomic orbital electron populations 1.24383 0.95762 1.01857 1.00550 1.22023 0.95419 0.96488 0.99981 1.20540 0.93906 0.94272 1.02992 1.20754 0.99852 0.94211 1.02051 1.22803 0.93981 0.97822 0.98210 1.20842 0.99312 0.98505 0.97423 1.20371 0.80238 0.84063 0.85494 1.90649 1.66799 1.27487 1.58537 1.45812 1.43562 1.14765 1.31161 1.21844 0.92823 0.97825 0.88000 1.20451 0.89555 0.87959 0.92331 1.42567 1.40984 1.13166 1.38595 1.19099 1.08320 1.03067 1.05921 0.91257 1.24670 0.99485 0.97120 0.99130 1.69644 1.39794 1.08950 1.39594 0.86299 0.81243 0.77345 0.82018 1.21757 1.21853 1.20768 1.22428 0.94662 1.01685 0.97601 1.22305 0.96407 1.00498 0.96659 1.22386 0.97297 1.00811 0.94977 1.22865 0.95394 0.98716 1.00384 0.88197 0.88293 0.86304 0.91395 0.91962 0.91810 0.86426 0.87928 0.88318 0.76242 0.92868 0.91615 0.78110 0.93587 0.92001 0.91314 0.92315 0.92379 0.91437 0.92744 0.90414 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.07 14.07 28.88 0.41 -1.66 16 2 C -0.12 -1.50 9.20 -37.83 -0.35 -1.85 16 3 C -0.12 -1.48 5.98 -102.87 -0.61 -2.09 16 4 C -0.11 -1.17 9.39 36.00 0.34 -0.83 16 5 C -0.11 -1.47 8.43 -36.16 -0.30 -1.78 16 6 C -0.12 -1.63 5.92 -29.04 -0.17 -1.81 16 7 C 0.51 8.93 7.82 -10.99 -0.09 8.84 16 8 O -0.56 -11.59 16.03 5.56 0.09 -11.50 16 9 N -0.70 -12.18 4.90 -60.30 -0.30 -12.48 16 10 C 0.12 2.25 4.13 -4.04 -0.02 2.23 16 11 C 0.19 3.41 0.68 -130.70 -0.09 3.32 16 12 N -0.71 -15.88 4.93 -46.20 -0.23 -16.11 16 13 C -0.23 -6.00 8.43 -15.06 -0.13 -6.12 16 14 H 0.07 1.81 7.09 -52.49 -0.37 1.44 16 15 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 16 N -0.93 -26.57 13.06 55.49 0.72 -25.85 16 17 Si 0.90 22.12 29.55 -169.99 -5.02 17.09 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 C -0.13 -1.90 5.69 -25.61 -0.15 -2.05 16 22 C -0.12 -1.64 6.83 -25.07 -0.17 -1.81 16 23 C -0.12 -1.75 6.91 -24.74 -0.17 -1.92 16 24 C -0.13 -2.29 5.97 -25.07 -0.15 -2.44 16 25 H 0.10 0.99 8.06 -52.49 -0.42 0.56 16 26 H 0.10 0.97 6.30 -52.48 -0.33 0.64 16 27 H 0.12 1.43 6.00 -52.48 -0.31 1.12 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.56 6.65 -51.93 -0.35 0.22 16 30 H 0.06 0.60 8.06 -51.93 -0.42 0.18 16 31 H 0.12 1.56 8.04 -52.48 -0.42 1.14 16 32 H 0.10 1.36 5.42 -51.93 -0.28 1.08 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.40 6.64 7.99 -40.82 -0.33 6.32 16 35 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 36 H 0.07 1.43 7.02 -51.93 -0.36 1.06 16 37 H 0.38 9.19 7.29 -40.82 -0.30 8.89 16 38 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.06 0.87 7.33 -51.93 -0.38 0.49 16 40 H 0.07 1.08 7.45 -51.93 -0.39 0.69 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 1.53 7.42 -51.93 -0.39 1.14 16 46 H 0.05 0.83 7.82 -51.93 -0.41 0.42 16 LS Contribution 367.92 15.07 5.54 5.54 Total: -1.00 -30.00 367.92 -8.48 -38.48 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -7.55 Total: 15.08 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -1.75 Total: -10.27 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 0.20 Total: -54.43 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.09 Total: -11.50 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.00 -8.48 -38.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753667358.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.788 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds