Wall clock time and date at job start Tue Mar 31 2020 08:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32868 * 1 3 3 C 1.47117 * 120.00218 * 2 1 4 4 C 1.50697 * 119.99965 * 5.02937 * 3 2 1 5 5 C 1.32870 * 119.99891 * 185.03634 * 3 2 1 6 6 C 1.50701 * 120.00394 * 6.62298 * 5 3 2 7 7 C 1.50694 * 109.47067 * 126.14387 * 6 5 3 8 8 O 1.21279 * 120.00053 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00076 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00482 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47349 * 174.93957 * 10 9 7 12 12 N 1.46504 * 110.05238 * 62.71583 * 11 10 9 13 13 C 1.36937 * 120.00386 * 54.02551 * 12 11 10 14 14 H 1.08000 * 119.99821 * 5.13705 * 13 12 11 15 15 C 1.38813 * 119.99682 * 185.14378 * 13 12 11 16 16 N 1.31616 * 120.00571 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99296 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46891 * 90.00349 * 17 15 13 19 19 H 1.48506 * 109.46545 * 209.99615 * 17 15 13 20 20 H 1.48496 * 109.47325 * 329.99509 * 17 15 13 21 21 C 1.53871 * 110.03498 * 301.30002 * 11 10 9 22 22 C 1.54272 * 106.59379 * 240.71608 * 21 11 10 23 23 C 1.54885 * 104.19806 * 336.38628 * 22 21 11 24 24 C 1.54265 * 110.03070 * 184.12612 * 11 10 9 25 25 H 1.07993 * 120.00133 * 180.02562 * 1 2 3 26 26 H 1.08004 * 119.99939 * 0.02562 * 1 2 3 27 27 H 1.08004 * 119.99939 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47367 * 270.00392 * 4 3 2 29 29 H 1.09002 * 109.46910 * 30.00482 * 4 3 2 30 30 H 1.09000 * 109.46719 * 150.00041 * 4 3 2 31 31 H 1.08003 * 119.99652 * 186.62801 * 5 3 2 32 32 H 1.09006 * 109.46576 * 6.14481 * 6 5 3 33 33 H 1.08996 * 109.47261 * 246.14977 * 6 5 3 34 34 H 0.97007 * 119.99848 * 359.97438 * 9 7 6 35 35 H 1.08997 * 109.46841 * 54.93925 * 10 9 7 36 36 H 1.09003 * 109.46702 * 294.94402 * 10 9 7 37 37 H 0.97000 * 119.99547 * 234.01895 * 12 11 10 38 38 H 0.96995 * 120.00287 * 180.02562 * 16 15 13 39 39 H 1.09004 * 110.02751 * 359.97438 * 21 11 10 40 40 H 1.08993 * 110.03739 * 121.42905 * 21 11 10 41 41 H 1.08999 * 110.48474 * 95.06994 * 22 21 11 42 42 H 1.09000 * 110.48285 * 217.70855 * 22 21 11 43 43 H 1.08998 * 110.75691 * 279.63018 * 23 22 21 44 44 H 1.08995 * 110.75749 * 156.26041 * 23 22 21 45 45 H 1.08996 * 110.49019 * 261.57083 * 24 11 10 46 46 H 1.08995 * 110.48888 * 24.22531 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3152 2.5766 0.1144 5 6 3.3892 1.2762 -0.1010 6 6 4.1269 -0.0111 -0.3651 7 6 5.0144 0.1570 -1.5714 8 8 5.0452 1.2177 -2.1585 9 7 5.7739 -0.8715 -1.9978 10 6 6.6371 -0.7081 -3.1702 11 6 7.4786 -1.9710 -3.3640 12 7 6.6080 -3.1187 -3.6310 13 6 5.6945 -3.0628 -4.6496 14 1 5.6717 -2.2071 -5.3082 15 6 4.7977 -4.1059 -4.8355 16 7 4.8257 -5.1489 -4.0332 17 14 3.5510 -4.0292 -6.2246 18 1 4.1328 -4.6411 -7.4462 19 1 2.3272 -4.7737 -5.8329 20 1 3.2018 -2.6122 -6.4988 21 6 8.3292 -2.2354 -2.1093 22 6 9.8042 -2.1895 -2.5593 23 6 9.7495 -2.5097 -4.0736 24 6 8.4662 -1.7738 -4.5326 25 1 -0.5400 -0.9352 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8687 -0.9353 0.0004 28 1 1.0565 2.9357 -0.8816 29 1 0.4044 2.4223 0.6929 30 1 1.9430 3.3139 0.6148 31 1 3.9374 2.2005 0.0063 32 1 3.4087 -0.8098 -0.5508 33 1 4.7365 -0.2650 0.5020 34 1 5.7495 -1.7199 -1.5280 35 1 7.2953 0.1476 -3.0201 36 1 6.0215 -0.5423 -4.0543 37 1 6.6788 -3.9182 -3.0864 38 1 4.1993 -5.8779 -4.1634 39 1 8.1428 -1.4636 -1.3625 40 1 8.0944 -3.2175 -1.6991 41 1 10.2226 -1.1966 -2.3941 42 1 10.3878 -2.9432 -2.0307 43 1 9.6589 -3.5834 -4.2384 44 1 10.6264 -2.1122 -4.5845 45 1 8.0735 -2.2242 -5.4441 46 1 8.6687 -0.7138 -4.6861 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753667358.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:13 Heat of formation + Delta-G solvation = -25.233872 kcal Electronic energy + Delta-G solvation = -23816.437166 eV Core-core repulsion = 20512.594166 eV Total energy + Delta-G solvation = -3303.843000 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.92418 -39.61591 -37.78835 -35.54044 -35.09772 -33.01687 -32.37287 -30.93841 -29.54641 -29.30208 -26.86280 -25.73893 -24.58410 -22.75427 -21.82164 -21.00627 -20.08554 -18.97501 -18.52121 -18.02865 -17.29074 -16.86565 -16.62181 -16.19591 -15.81384 -15.70772 -15.32179 -15.15154 -14.66206 -14.38687 -14.19685 -13.99254 -13.57641 -13.40140 -13.24370 -13.20097 -12.94409 -12.85034 -12.50654 -12.42120 -12.33274 -12.17351 -11.88162 -11.73984 -11.59565 -11.54154 -11.39703 -11.34260 -11.32172 -10.97024 -10.77021 -9.89900 -9.13007 -8.94678 -7.91731 -5.16895 0.43405 1.42654 1.45171 1.51137 1.73031 2.06431 2.50600 2.57606 3.39689 3.75710 3.77552 3.84764 3.89419 3.97577 4.02478 4.16354 4.24376 4.43669 4.45584 4.58155 4.61245 4.67129 4.67635 4.74141 4.80226 4.80409 4.88016 4.92206 4.98587 5.06541 5.14395 5.14979 5.19252 5.27640 5.39422 5.47849 5.49408 5.57215 5.58453 5.62320 5.69262 5.81644 6.03645 6.32297 6.69957 7.35117 7.39881 8.13629 8.38394 9.30653 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.011370 B = 0.004982 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.106655 B = 5618.737443 C = 7381.855505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.150 4.150 3 C -0.113 4.113 4 C -0.114 4.114 5 C -0.134 4.134 6 C -0.111 4.111 7 C 0.508 3.492 8 O -0.593 6.593 9 N -0.701 5.701 10 C 0.128 3.872 11 C 0.185 3.815 12 N -0.714 5.714 13 C -0.215 4.215 14 H 0.061 0.939 15 C -0.062 4.062 16 N -0.959 5.959 17 Si 0.948 3.052 18 H -0.290 1.290 19 H -0.296 1.296 20 H -0.284 1.284 21 C -0.119 4.119 22 C -0.113 4.113 23 C -0.113 4.113 24 C -0.134 4.134 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.117 0.883 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.128 0.872 34 H 0.408 0.592 35 H 0.064 0.936 36 H 0.028 0.972 37 H 0.376 0.624 38 H 0.248 0.752 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.050 0.950 44 H 0.077 0.923 45 H 0.046 0.954 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.590 9.744 11.174 14.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C -0.114 4.114 4 C -0.170 4.170 5 C -0.152 4.152 6 C -0.150 4.150 7 C 0.296 3.704 8 O -0.475 6.475 9 N -0.351 5.351 10 C 0.002 3.998 11 C 0.094 3.906 12 N -0.355 5.355 13 C -0.348 4.348 14 H 0.079 0.921 15 C -0.255 4.255 16 N -0.610 5.610 17 Si 0.779 3.221 18 H -0.217 1.217 19 H -0.223 1.223 20 H -0.209 1.209 21 C -0.157 4.157 22 C -0.150 4.150 23 C -0.150 4.150 24 C -0.174 4.174 25 H 0.129 0.871 26 H 0.130 0.870 27 H 0.135 0.865 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.133 0.867 32 H 0.123 0.877 33 H 0.146 0.854 34 H 0.244 0.756 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.210 0.790 38 H 0.057 0.943 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.069 0.931 44 H 0.096 0.904 45 H 0.064 0.936 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.504 10.537 10.622 15.037 hybrid contribution -0.948 -1.003 -0.951 1.676 sum 0.556 9.534 9.671 13.592 Atomic orbital electron populations 1.24643 0.95375 1.03079 0.97941 1.22134 0.96152 0.96420 1.02064 1.20839 0.93882 0.95316 1.01322 1.20816 1.00532 0.93379 1.02302 1.22798 0.94439 0.97641 1.00361 1.20815 0.98899 0.98843 0.96456 1.21096 0.79970 0.83226 0.86107 1.90623 1.67976 1.28921 1.59966 1.45828 1.43475 1.15107 1.30653 1.21685 0.92521 0.98423 0.87180 1.20702 0.89307 0.86131 0.94415 1.42631 1.41044 1.14210 1.37574 1.19228 1.07844 1.01919 1.05770 0.92092 1.25185 1.01496 0.97535 1.01256 1.69745 1.40697 1.09492 1.41109 0.85523 0.79531 0.76846 0.80180 1.21746 1.22291 1.20944 1.22373 0.95318 1.01881 0.96173 1.22298 0.95210 1.02251 0.95254 1.22355 0.96742 0.99477 0.96467 1.22822 0.96314 0.99795 0.98512 0.87119 0.86970 0.86533 0.91640 0.90345 0.90852 0.86733 0.87682 0.85391 0.75648 0.91734 0.95370 0.79006 0.94264 0.90518 0.91796 0.90343 0.90617 0.93149 0.90427 0.93558 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.46 14.07 66.64 0.94 -2.52 16 2 C -0.15 -3.51 9.20 23.43 0.22 -3.30 16 3 C -0.11 -2.74 5.98 -18.71 -0.11 -2.85 16 4 C -0.11 -2.19 9.39 71.23 0.67 -1.52 16 5 C -0.13 -3.50 8.43 24.51 0.21 -3.29 16 6 C -0.11 -2.89 5.92 29.10 0.17 -2.72 16 7 C 0.51 17.56 7.82 87.65 0.69 18.24 16 8 O -0.59 -24.92 16.03 -3.02 -0.05 -24.97 16 9 N -0.70 -24.02 4.90 -463.07 -2.27 -26.28 16 10 C 0.13 4.75 4.13 86.38 0.36 5.11 16 11 C 0.19 6.57 0.68 4.32 0.00 6.57 16 12 N -0.71 -32.12 4.93 -300.07 -1.48 -33.60 16 13 C -0.22 -11.26 8.43 84.03 0.71 -10.55 16 14 H 0.06 3.26 7.09 -2.91 -0.02 3.24 16 15 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 16 N -0.96 -55.51 13.06 21.65 0.28 -55.23 16 17 Si 0.95 46.21 29.55 68.60 2.03 48.24 16 18 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 19 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 20 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 21 C -0.12 -3.37 5.69 31.32 0.18 -3.19 16 22 C -0.11 -2.67 6.83 31.67 0.22 -2.46 16 23 C -0.11 -3.13 6.91 31.89 0.22 -2.91 16 24 C -0.13 -4.52 5.97 31.67 0.19 -4.33 16 25 H 0.11 1.94 8.06 -2.91 -0.02 1.92 16 26 H 0.11 1.90 6.30 -2.91 -0.02 1.88 16 27 H 0.12 2.72 6.00 -2.91 -0.02 2.70 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.08 1.23 6.65 -2.39 -0.02 1.21 16 30 H 0.07 1.26 8.06 -2.39 -0.02 1.24 16 31 H 0.11 3.01 8.04 -2.91 -0.02 2.98 16 32 H 0.11 2.71 5.42 -2.38 -0.01 2.69 16 33 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.41 13.18 7.99 -92.70 -0.74 12.44 16 35 H 0.06 2.25 8.08 -2.39 -0.02 2.23 16 36 H 0.03 1.25 7.02 -2.39 -0.02 1.23 16 37 H 0.38 18.15 7.29 -92.71 -0.68 17.48 16 38 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 39 H 0.08 1.95 7.33 -2.38 -0.02 1.93 16 40 H 0.06 1.89 7.45 -2.39 -0.02 1.87 16 41 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.05 1.84 7.42 -2.39 -0.02 1.82 16 46 H 0.07 2.06 7.82 -2.39 -0.02 2.04 16 Total: -1.00 -65.22 367.92 3.19 -62.03 By element: Atomic # 1 Polarization: 42.93 SS G_CDS: -0.44 Total: 42.49 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 5.11 Total: -12.68 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -3.46 Total: -115.11 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.05 Total: -24.97 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -65.22 3.19 -62.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753667358.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.799 kcal (2) G-P(sol) polarization free energy of solvation -65.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds