Wall clock time and date at job start Tue Mar 31 2020 07:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50703 * 120.00049 * 2 1 4 4 C 1.53000 * 109.46912 * 124.99542 * 3 2 1 5 5 C 1.52997 * 109.47060 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47466 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00011 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00369 * 180.02562 * 6 5 4 9 9 C 1.47156 * 125.59773 * 0.02661 * 8 6 5 10 10 C 1.54627 * 107.34369 * 180.88293 * 9 8 6 11 11 C 1.53468 * 102.74516 * 20.65585 * 10 9 8 12 12 C 1.53496 * 111.82499 * 87.16459 * 11 10 9 13 13 C 1.55207 * 101.39492 * 155.70181 * 12 11 10 14 14 N 1.47584 * 105.02938 * 324.67178 * 13 12 11 15 15 C 1.36928 * 125.68120 * 203.79449 * 14 13 12 16 16 H 1.08000 * 120.00739 * 180.02562 * 15 14 13 17 17 C 1.38816 * 119.99751 * 0.03757 * 15 14 13 18 18 N 1.31618 * 120.00354 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99902 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47228 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46524 * 120.00093 * 19 17 15 22 22 H 1.48500 * 109.47280 * 239.99871 * 19 17 15 23 23 C 1.47450 * 108.64361 * 23.82484 * 14 13 12 24 24 C 1.47751 * 125.60088 * 179.71800 * 8 6 5 25 25 H 1.07994 * 120.00051 * 180.02562 * 1 2 3 26 26 H 1.08006 * 119.99867 * 0.02562 * 1 2 3 27 27 H 1.07996 * 119.99855 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46980 * 4.99670 * 3 2 1 29 29 H 1.08992 * 109.47158 * 244.99775 * 3 2 1 30 30 H 1.09002 * 109.47398 * 300.00078 * 4 3 2 31 31 H 1.09001 * 109.47194 * 60.00258 * 4 3 2 32 32 H 1.09002 * 109.47153 * 300.00319 * 5 4 3 33 33 H 1.08998 * 109.47533 * 59.99948 * 5 4 3 34 34 H 1.09006 * 109.87125 * 300.32080 * 9 8 6 35 35 H 1.08998 * 109.87401 * 61.43963 * 9 8 6 36 36 H 1.09006 * 110.75844 * 138.96635 * 10 9 8 37 37 H 1.08998 * 110.75904 * 262.15586 * 10 9 8 38 38 H 1.08999 * 111.04246 * 273.73526 * 12 11 10 39 39 H 1.09001 * 111.04173 * 37.67352 * 12 11 10 40 40 H 1.08997 * 110.33640 * 205.78541 * 13 12 11 41 41 H 1.09007 * 110.42069 * 83.60036 * 13 12 11 42 42 H 0.96994 * 120.00664 * 179.97438 * 18 17 15 43 43 H 1.08991 * 109.99796 * 238.44998 * 23 14 13 44 44 H 1.09006 * 110.02641 * 117.13522 * 23 14 13 45 45 H 1.09001 * 110.39571 * 276.49124 * 24 8 6 46 46 H 1.09004 * 110.39502 * 38.89535 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.8005 2.6578 1.1814 6 6 4.7578 2.6852 2.3449 7 8 4.8219 1.7382 3.0998 8 7 5.5428 3.7620 2.5466 9 6 5.5659 4.9736 1.7117 10 6 6.6297 5.9241 2.3082 11 6 7.5091 4.9738 3.1320 12 6 8.6256 4.3497 2.2834 13 6 9.6787 4.0027 3.3695 14 7 9.5777 5.0904 4.3618 15 6 10.5662 5.4764 5.2272 16 1 10.3923 6.2876 5.9186 17 6 11.7920 4.8250 5.2157 18 7 12.0043 3.8368 4.3726 19 14 13.1408 5.3519 6.3958 20 1 12.6541 6.4778 7.2330 21 1 13.5083 4.2087 7.2695 22 1 14.3319 5.7876 5.6234 23 6 8.2348 5.6920 4.2668 24 6 6.5167 3.9226 3.6460 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1317 0.0895 29 1 2.6214 1.4026 -0.9313 30 1 2.4772 1.2356 2.1131 31 1 3.7400 0.5066 1.0922 32 1 4.3584 2.7548 0.2500 33 1 3.0960 3.4847 1.2706 34 1 5.8344 4.7130 0.6879 35 1 4.5879 5.4545 1.7293 36 1 7.2102 6.3993 1.5173 37 1 6.1631 6.6742 2.9467 38 1 8.2756 3.4506 1.7763 39 1 9.0233 5.0703 1.5688 40 1 10.6778 3.9788 2.9344 41 1 9.4453 3.0443 3.8332 42 1 12.8609 3.3819 4.3643 43 1 8.3177 6.7553 4.0422 44 1 7.6951 5.5500 5.2032 45 1 6.0170 4.2773 4.5474 46 1 7.0291 2.9803 3.8403 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754565404.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:26 Heat of formation + Delta-G solvation = -0.697925 kcal Electronic energy + Delta-G solvation = -23565.583167 eV Core-core repulsion = 20262.804126 eV Total energy + Delta-G solvation = -3302.779041 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.29916 -38.51749 -36.20663 -35.62707 -32.86034 -32.38407 -30.60169 -29.19101 -28.51870 -27.46513 -25.39188 -24.03496 -22.46032 -21.96112 -20.31741 -20.14194 -19.06886 -18.68374 -17.04825 -16.63991 -16.31953 -15.59449 -15.35908 -14.87103 -14.57224 -14.32273 -13.93492 -13.83924 -13.58755 -13.17085 -12.74103 -12.60853 -12.49678 -12.09748 -11.95301 -11.87830 -11.76076 -11.65814 -11.31371 -11.18890 -11.11354 -10.92958 -10.90511 -10.78742 -10.26233 -10.04230 -9.91952 -9.77368 -9.71843 -9.58378 -9.46572 -8.64341 -8.50882 -6.82963 -5.64340 -3.05999 2.00702 2.73214 3.07562 3.40398 3.45721 3.48379 4.40860 4.49625 4.53591 4.68139 4.72515 4.86589 4.96565 5.00796 5.04521 5.25648 5.28939 5.31746 5.37908 5.43776 5.49938 5.53366 5.55424 5.66591 5.81766 5.91999 5.92904 5.96328 6.01596 6.10703 6.14229 6.21116 6.30210 6.35545 6.39602 6.49640 6.55064 6.63756 6.75293 6.83762 7.53296 7.63230 7.64355 7.86513 8.26729 8.36229 9.22485 9.83247 10.48455 11.39734 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.036318 B = 0.002783 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.775518 B =10060.127399 C =10405.262031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C -0.095 4.095 4 C -0.100 4.100 5 C -0.135 4.135 6 C 0.523 3.477 7 O -0.543 6.543 8 N -0.618 5.618 9 C 0.104 3.896 10 C -0.117 4.117 11 C -0.081 4.081 12 C -0.129 4.129 13 C 0.153 3.847 14 N -0.604 5.604 15 C -0.221 4.221 16 H 0.078 0.922 17 C -0.012 4.012 18 N -0.922 5.922 19 Si 0.914 3.086 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.152 3.848 24 C 0.125 3.875 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.105 0.895 41 H 0.012 0.988 42 H 0.251 0.749 43 H 0.030 0.970 44 H 0.024 0.976 45 H 0.066 0.934 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.303 0.069 -11.217 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.167 4.167 3 C -0.133 4.133 4 C -0.138 4.138 5 C -0.175 4.175 6 C 0.312 3.688 7 O -0.420 6.420 8 N -0.352 5.352 9 C -0.019 4.019 10 C -0.155 4.155 11 C -0.082 4.082 12 C -0.167 4.167 13 C 0.028 3.972 14 N -0.331 5.331 15 C -0.350 4.350 16 H 0.096 0.904 17 C -0.208 4.208 18 N -0.570 5.570 19 Si 0.745 3.255 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.025 3.975 24 C 0.004 3.996 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.127 0.873 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.123 0.877 41 H 0.030 0.970 42 H 0.062 0.938 43 H 0.048 0.952 44 H 0.042 0.958 45 H 0.084 0.916 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.105 -0.554 -10.756 21.932 hybrid contribution 0.661 0.271 0.615 0.942 sum -18.444 -0.283 -10.141 21.050 Atomic orbital electron populations 1.23840 0.95978 1.01740 1.02109 1.22986 0.96026 0.98680 0.99022 1.20804 0.98186 0.95411 0.98866 1.21293 0.97685 0.96399 0.98456 1.21664 0.98024 1.00345 0.97464 1.20350 0.80786 0.81103 0.86540 1.90715 1.68483 1.34867 1.47983 1.48722 1.39989 1.16818 1.29694 1.22098 0.99452 0.85615 0.94775 1.22476 0.96204 0.96969 0.99896 1.21588 0.94624 0.94913 0.97115 1.22799 0.96277 0.99255 0.98380 1.21989 0.98608 0.89306 0.87272 1.44650 1.09041 1.37705 1.41672 1.19117 0.91026 1.13465 1.11353 0.90415 1.24798 0.97989 0.98259 0.99737 1.69813 1.23435 1.25039 1.38762 0.86002 0.81882 0.77631 0.80004 1.20535 1.21777 1.21777 1.20998 0.87189 0.95276 0.94007 1.22106 0.88576 1.00153 0.88792 0.88637 0.88685 0.87326 0.91512 0.90874 0.91091 0.90947 0.89009 0.89174 0.91495 0.91731 0.89806 0.90614 0.92442 0.91837 0.87718 0.97012 0.93787 0.95240 0.95832 0.91612 0.89996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.46 14.32 29.01 0.42 -1.04 16 2 C -0.15 -1.18 9.52 -36.03 -0.34 -1.53 16 3 C -0.10 -0.72 5.66 -27.88 -0.16 -0.88 16 4 C -0.10 -0.98 4.49 -26.73 -0.12 -1.10 16 5 C -0.14 -1.30 4.89 -27.89 -0.14 -1.44 16 6 C 0.52 7.57 7.85 -10.99 -0.09 7.49 16 7 O -0.54 -10.16 16.26 5.56 0.09 -10.07 16 8 N -0.62 -8.69 3.34 -170.88 -0.57 -9.26 16 9 C 0.10 1.10 6.46 -2.83 -0.02 1.09 16 10 C -0.12 -1.43 5.84 -25.63 -0.15 -1.58 16 11 C -0.08 -1.35 0.61 -153.97 -0.09 -1.44 16 12 C -0.13 -2.39 5.98 -25.31 -0.15 -2.54 16 13 C 0.15 3.73 5.83 -2.28 -0.01 3.71 16 14 N -0.60 -15.39 3.41 -170.44 -0.58 -15.97 16 15 C -0.22 -6.16 10.28 -15.06 -0.15 -6.32 16 16 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 17 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 18 N -0.92 -27.10 10.10 55.49 0.56 -26.54 16 19 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 C 0.15 3.06 6.51 -3.70 -0.02 3.04 16 24 C 0.13 2.10 5.77 -3.14 -0.02 2.09 16 25 H 0.10 0.61 8.06 -52.49 -0.42 0.19 16 26 H 0.09 0.62 7.84 -52.48 -0.41 0.21 16 27 H 0.11 0.83 8.06 -52.49 -0.42 0.41 16 28 H 0.07 0.45 7.79 -51.93 -0.40 0.05 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 31 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.95 7.80 -51.93 -0.40 0.55 16 37 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 38 H 0.06 1.02 8.01 -51.93 -0.42 0.60 16 39 H 0.06 1.14 7.85 -51.93 -0.41 0.73 16 40 H 0.11 2.87 5.89 -51.93 -0.31 2.57 16 41 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.03 0.58 7.88 -51.93 -0.41 0.17 16 44 H 0.02 0.48 7.61 -51.93 -0.40 0.09 16 45 H 0.07 1.09 7.80 -51.93 -0.40 0.68 16 46 H 0.08 1.62 7.91 -51.93 -0.41 1.20 16 LS Contribution 365.25 15.07 5.50 5.50 Total: -1.00 -32.34 365.25 -9.33 -41.67 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -8.16 Total: -1.59 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -1.15 Total: -0.91 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.59 Total: -51.77 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.34 -9.33 -41.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754565404.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.972 kcal (2) G-P(sol) polarization free energy of solvation -32.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds