Wall clock time and date at job start Tue Mar 31 2020 07:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50703 * 120.00049 * 2 1 4 4 C 1.53000 * 109.46912 * 124.99542 * 3 2 1 5 5 C 1.52997 * 109.47060 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47466 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00011 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00369 * 180.02562 * 6 5 4 9 9 C 1.47168 * 125.59284 * 0.02562 * 8 6 5 10 10 C 1.54661 * 107.35217 * 180.90557 * 9 8 6 11 11 C 1.53310 * 102.71269 * 20.50877 * 10 9 8 12 12 C 1.53303 * 112.21736 * 204.98405 * 11 10 9 13 13 C 1.54667 * 102.71776 * 271.82399 * 12 11 10 14 14 N 1.47163 * 107.35112 * 339.49067 * 13 12 11 15 15 C 1.36940 * 125.59346 * 179.12852 * 14 13 12 16 16 H 1.07997 * 120.00108 * 179.97438 * 15 14 13 17 17 C 1.38815 * 119.99700 * 359.97438 * 15 14 13 18 18 N 1.31620 * 120.00278 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99617 * 179.97438 * 17 15 14 20 20 H 1.48491 * 109.47451 * 90.00001 * 19 17 15 21 21 H 1.48500 * 109.46650 * 210.00003 * 19 17 15 22 22 H 1.48497 * 109.47231 * 329.99499 * 19 17 15 23 23 C 1.47788 * 108.81554 * 359.09851 * 14 13 12 24 24 C 1.47792 * 125.59658 * 179.72225 * 8 6 5 25 25 H 1.07994 * 120.00051 * 180.02562 * 1 2 3 26 26 H 1.08006 * 119.99867 * 0.02562 * 1 2 3 27 27 H 1.07996 * 119.99855 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46980 * 4.99670 * 3 2 1 29 29 H 1.08992 * 109.47158 * 244.99775 * 3 2 1 30 30 H 1.09002 * 109.47398 * 300.00078 * 4 3 2 31 31 H 1.09001 * 109.47194 * 60.00258 * 4 3 2 32 32 H 1.09002 * 109.47153 * 300.00319 * 5 4 3 33 33 H 1.08998 * 109.47533 * 59.99948 * 5 4 3 34 34 H 1.09003 * 109.86909 * 300.34505 * 9 8 6 35 35 H 1.09001 * 109.86925 * 61.32856 * 9 8 6 36 36 H 1.09005 * 110.75823 * 138.81196 * 10 9 8 37 37 H 1.08997 * 110.76346 * 262.20343 * 10 9 8 38 38 H 1.08996 * 110.76496 * 30.13562 * 12 11 10 39 39 H 1.09005 * 110.75910 * 153.33861 * 12 11 10 40 40 H 1.09002 * 109.86743 * 98.93408 * 13 12 11 41 41 H 1.09000 * 109.87090 * 220.04421 * 13 12 11 42 42 H 0.96998 * 119.99756 * 180.02562 * 18 17 15 43 43 H 1.08999 * 110.40184 * 263.37735 * 23 14 13 44 44 H 1.09000 * 110.40344 * 140.95825 * 23 14 13 45 45 H 1.09001 * 110.39590 * 276.61561 * 24 8 6 46 46 H 1.08994 * 110.40161 * 39.02946 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.8005 2.6578 1.1814 6 6 4.7578 2.6852 2.3449 7 8 4.8219 1.7382 3.0998 8 7 5.5428 3.7620 2.5466 9 6 5.5659 4.9737 1.7116 10 6 6.6302 5.9244 2.3076 11 6 7.5062 4.9750 3.1332 12 6 8.2291 5.6988 4.2750 13 6 9.5348 6.1805 3.6002 14 7 9.7409 5.3519 2.4016 15 6 10.7797 5.4734 1.5176 16 1 10.8428 4.8140 0.6647 17 6 11.7515 6.4441 1.7180 18 7 11.6743 7.2481 2.7572 19 14 13.1689 6.6094 0.5125 20 1 12.7944 7.5605 -0.5646 21 1 14.3686 7.1167 1.2257 22 1 13.4707 5.2824 -0.0818 23 6 8.6433 4.3665 2.3088 24 6 6.5170 3.9225 3.6463 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1317 0.0895 29 1 2.6214 1.4026 -0.9313 30 1 2.4772 1.2356 2.1131 31 1 3.7400 0.5066 1.0922 32 1 4.3584 2.7548 0.2500 33 1 3.0960 3.4847 1.2706 34 1 5.8338 4.7129 0.6877 35 1 4.5872 5.4533 1.7276 36 1 7.2122 6.3973 1.5164 37 1 6.1641 6.6741 2.9468 38 1 7.6416 6.5460 4.6287 39 1 8.4446 5.0114 5.0931 40 1 9.4394 7.2281 3.3144 41 1 10.3735 6.0564 4.2852 42 1 12.3532 7.9267 2.8969 43 1 8.9526 3.4120 2.7346 44 1 8.3342 4.2386 1.2714 45 1 6.0170 4.2750 4.5484 46 1 7.0311 2.9809 3.8389 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754565405.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:55 Heat of formation + Delta-G solvation = -2.619740 kcal Electronic energy + Delta-G solvation = -23583.282064 eV Core-core repulsion = 20280.419687 eV Total energy + Delta-G solvation = -3302.862378 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 7.36 seconds Orbital eigenvalues (eV) -40.28772 -38.54779 -36.21559 -35.60668 -32.87061 -32.40064 -30.40801 -29.42731 -28.58010 -27.30125 -25.52353 -23.78645 -22.71475 -21.89363 -20.25196 -20.14147 -19.16533 -18.62070 -17.06262 -16.70040 -16.21732 -15.54751 -15.42664 -14.77928 -14.49359 -14.35144 -14.02362 -13.86677 -13.56754 -13.20374 -12.76649 -12.62316 -12.36448 -12.30639 -11.98377 -11.90875 -11.69563 -11.50743 -11.32706 -11.15721 -11.09280 -10.90539 -10.86576 -10.78773 -10.20479 -10.05314 -9.95574 -9.82285 -9.72119 -9.65293 -9.55803 -8.60511 -8.52135 -6.83581 -5.71993 -3.05151 2.00710 2.71035 3.06783 3.38966 3.44486 3.46279 4.41267 4.48872 4.54448 4.72981 4.76038 4.88478 4.97777 5.05109 5.05954 5.26790 5.29414 5.36099 5.41818 5.47056 5.50316 5.54622 5.62280 5.67330 5.76110 5.85396 5.92882 5.95974 6.01351 6.11764 6.15798 6.24170 6.34660 6.37179 6.39804 6.49747 6.51372 6.61098 6.72892 6.83251 7.55242 7.61896 7.62429 7.81953 8.23892 8.24773 9.21565 9.81456 10.47767 11.39652 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.026814 B = 0.002935 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.996399 B = 9537.759667 C =10094.401962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C -0.096 4.096 4 C -0.099 4.099 5 C -0.136 4.136 6 C 0.525 3.475 7 O -0.548 6.548 8 N -0.617 5.617 9 C 0.102 3.898 10 C -0.110 4.110 11 C -0.084 4.084 12 C -0.131 4.131 13 C 0.180 3.820 14 N -0.605 5.605 15 C -0.226 4.226 16 H 0.077 0.923 17 C -0.009 4.009 18 N -0.922 5.922 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.154 3.846 24 C 0.122 3.878 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.047 0.953 41 H 0.042 0.958 42 H 0.252 0.748 43 H 0.019 0.981 44 H 0.037 0.963 45 H 0.066 0.934 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.334 -6.246 -3.227 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.167 4.167 3 C -0.133 4.133 4 C -0.137 4.137 5 C -0.176 4.176 6 C 0.314 3.686 7 O -0.426 6.426 8 N -0.351 5.351 9 C -0.021 4.021 10 C -0.148 4.148 11 C -0.085 4.085 12 C -0.169 4.169 13 C 0.055 3.945 14 N -0.332 5.332 15 C -0.355 4.355 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.570 5.570 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.028 3.972 24 C 0.000 4.000 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.126 0.874 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.037 0.963 44 H 0.056 0.944 45 H 0.084 0.916 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.147 -6.680 -2.870 20.481 hybrid contribution 0.827 0.225 -0.633 1.066 sum -18.320 -6.455 -3.503 19.737 Atomic orbital electron populations 1.23840 0.95980 1.01740 1.02123 1.22985 0.96021 0.98670 0.99016 1.20810 0.98209 0.95403 0.98917 1.21285 0.97651 0.96383 0.98414 1.21671 0.98059 1.00334 0.97553 1.20345 0.80726 0.81030 0.86475 1.90692 1.68771 1.34973 1.48139 1.48723 1.39808 1.16967 1.29575 1.22181 0.99579 0.85449 0.94916 1.22362 0.95456 0.96552 1.00421 1.21633 0.94625 0.94995 0.97288 1.22646 0.99027 0.98941 0.96322 1.21205 0.91067 0.94591 0.87589 1.44596 1.25119 1.36333 1.27103 1.19043 0.99646 1.13842 1.02946 0.90560 1.24791 0.99041 0.98395 0.98258 1.69960 1.35759 1.22383 1.28882 0.86130 0.81930 0.77672 0.80103 1.21642 1.21701 1.20747 1.21210 0.87119 0.92360 0.96559 1.22065 0.89092 0.99621 0.89230 0.88651 0.88670 0.87351 0.91481 0.90819 0.91145 0.90998 0.88892 0.89119 0.91374 0.91729 0.88946 0.90859 0.91820 0.92140 0.93500 0.93972 0.93785 0.96331 0.94435 0.91583 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.45 14.32 29.01 0.42 -1.04 16 2 C -0.15 -1.18 9.52 -36.03 -0.34 -1.52 16 3 C -0.10 -0.74 5.66 -27.88 -0.16 -0.89 16 4 C -0.10 -0.96 4.49 -26.73 -0.12 -1.08 16 5 C -0.14 -1.33 4.89 -27.89 -0.14 -1.47 16 6 C 0.53 7.40 7.85 -10.99 -0.09 7.31 16 7 O -0.55 -9.72 16.26 5.56 0.09 -9.63 16 8 N -0.62 -8.54 3.34 -170.91 -0.57 -9.11 16 9 C 0.10 1.19 6.48 -2.80 -0.02 1.18 16 10 C -0.11 -1.56 5.90 -25.70 -0.15 -1.71 16 11 C -0.08 -1.38 0.62 -154.02 -0.10 -1.48 16 12 C -0.13 -2.32 5.98 -25.70 -0.15 -2.47 16 13 C 0.18 4.23 5.37 -2.80 -0.02 4.22 16 14 N -0.60 -15.06 3.41 -170.59 -0.58 -15.64 16 15 C -0.23 -6.22 10.28 -15.06 -0.15 -6.38 16 16 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 17 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 18 N -0.92 -26.71 10.30 55.49 0.57 -26.14 16 19 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.15 3.13 6.21 -3.30 -0.02 3.11 16 24 C 0.12 1.85 5.94 -3.19 -0.02 1.84 16 25 H 0.10 0.60 8.06 -52.49 -0.42 0.18 16 26 H 0.09 0.63 7.84 -52.48 -0.41 0.22 16 27 H 0.11 0.82 8.06 -52.49 -0.42 0.40 16 28 H 0.07 0.46 7.79 -51.93 -0.40 0.06 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 31 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.09 1.49 8.00 -51.93 -0.42 1.07 16 37 H 0.07 0.94 7.83 -51.93 -0.41 0.53 16 38 H 0.06 1.00 7.78 -51.93 -0.40 0.60 16 39 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 40 H 0.05 1.21 7.39 -51.93 -0.38 0.82 16 41 H 0.04 1.11 7.49 -51.93 -0.39 0.72 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.02 0.40 7.86 -51.93 -0.41 -0.01 16 44 H 0.04 0.75 8.01 -51.93 -0.42 0.34 16 45 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 46 H 0.08 1.29 7.76 -51.93 -0.40 0.89 16 LS Contribution 366.24 15.07 5.52 5.52 Total: -1.00 -31.57 366.24 -9.37 -40.94 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -8.23 Total: -2.11 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -1.15 Total: -0.73 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.58 Total: -50.90 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.57 -9.37 -40.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754565405.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.325 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.37 seconds