Wall clock time and date at job start Tue Mar 31 2020 07:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50705 * 120.00189 * 2 1 4 4 C 1.50699 * 119.99842 * 180.27932 * 2 1 3 5 5 C 1.52998 * 109.47136 * 95.00136 * 4 2 1 6 6 C 1.50699 * 109.47136 * 179.97438 * 5 4 2 7 7 O 1.21285 * 119.99900 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00194 * 179.97438 * 6 5 4 9 9 C 1.47849 * 122.22457 * 0.02562 * 8 6 5 10 10 C 1.52717 * 111.05466 * 232.46495 * 9 8 6 11 11 C 1.53864 * 111.52515 * 311.46259 * 10 9 8 12 12 C 1.51084 * 107.34579 * 56.92970 * 11 10 9 13 13 H 1.08999 * 108.73340 * 50.84327 * 12 11 10 14 14 C 1.45724 * 122.22554 * 179.71069 * 8 6 5 15 15 H 1.09000 * 111.06973 * 240.54770 * 14 8 6 16 16 C 1.53513 * 116.32028 * 10.40190 * 14 8 6 17 17 C 1.55476 * 101.75423 * 152.42200 * 16 14 8 18 18 N 1.45017 * 119.19759 * 176.11076 * 12 11 10 19 19 C 1.36935 * 126.56373 * 331.26229 * 18 12 11 20 20 H 1.07999 * 120.00198 * 7.70333 * 19 18 12 21 21 C 1.38817 * 120.00131 * 187.70116 * 19 18 12 22 22 N 1.31628 * 119.99928 * 8.12788 * 21 19 18 23 23 Si 1.86801 * 120.00113 * 188.12377 * 21 19 18 24 24 H 1.48496 * 109.47180 * 94.81213 * 23 21 19 25 25 H 1.48498 * 109.46911 * 214.81305 * 23 21 19 26 26 H 1.48497 * 109.47070 * 334.80940 * 23 21 19 27 27 H 1.08002 * 119.99793 * 359.72398 * 1 2 3 28 28 H 1.07999 * 120.00385 * 179.72326 * 1 2 3 29 29 H 1.09000 * 109.46713 * 90.00228 * 3 2 1 30 30 H 1.08993 * 109.47135 * 209.99878 * 3 2 1 31 31 H 1.08999 * 109.46848 * 330.00322 * 3 2 1 32 32 H 1.09007 * 109.47129 * 214.99968 * 4 2 1 33 33 H 1.09000 * 109.47392 * 334.99801 * 4 2 1 34 34 H 1.08998 * 109.47184 * 299.99847 * 5 4 2 35 35 H 1.08992 * 109.47534 * 59.99771 * 5 4 2 36 36 H 1.08991 * 109.16426 * 352.87474 * 9 8 6 37 37 H 1.09009 * 109.15943 * 112.06127 * 9 8 6 38 38 H 1.08994 * 109.06673 * 71.99142 * 10 9 8 39 39 H 1.08998 * 109.06756 * 191.00498 * 10 9 8 40 40 H 1.08998 * 109.88771 * 176.39053 * 11 10 9 41 41 H 1.09003 * 109.88449 * 297.47593 * 11 10 9 42 42 H 1.09001 * 111.12221 * 34.22543 * 16 14 8 43 43 H 1.09004 * 110.81483 * 270.48212 * 16 14 8 44 44 H 1.08998 * 109.95938 * 217.82096 * 17 16 14 45 45 H 1.09003 * 109.98800 * 96.60031 * 17 16 14 46 46 H 0.96996 * 119.99830 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0064 5 6 2.4273 -1.6769 -1.4452 6 6 3.1813 -2.9817 -1.4515 7 8 3.4060 -3.5573 -0.4078 8 7 3.6060 -3.5090 -2.6169 9 6 3.3599 -2.8492 -3.9169 10 6 2.7081 -3.8127 -4.9064 11 6 3.4503 -5.1595 -4.9553 12 6 3.4676 -5.7155 -3.5506 13 1 2.4523 -5.6980 -3.1546 14 6 4.3442 -4.7639 -2.6787 15 1 5.3315 -4.6166 -3.1165 16 6 4.4032 -5.5835 -1.3821 17 6 4.5625 -7.0302 -1.9288 18 7 4.0353 -7.0293 -3.3167 19 6 4.0786 -8.0694 -4.2063 20 1 3.7767 -7.9158 -5.2318 21 6 4.5106 -9.3213 -3.7901 22 7 4.7255 -9.5521 -2.5122 23 14 4.7867 -10.6785 -5.0437 24 1 6.2179 -10.7033 -5.4391 25 1 4.4152 -11.9865 -4.4469 26 1 3.9465 -10.4244 -6.2414 27 1 -0.5400 0.9353 0.0045 28 1 -0.5401 -0.9352 -0.0045 29 1 2.2452 1.6197 1.0277 30 1 3.0159 1.1748 -0.5138 31 1 1.4744 2.0648 -0.5138 32 1 2.9742 -1.2017 0.5836 33 1 1.4385 -2.0876 0.4242 34 1 1.5166 -1.7803 -2.0351 35 1 3.0522 -0.8945 -1.8757 36 1 2.7024 -1.9933 -3.7650 37 1 4.3083 -2.5023 -4.3273 38 1 1.6747 -3.9862 -4.6063 39 1 2.7197 -3.3645 -5.8999 40 1 2.9273 -5.8473 -5.6197 41 1 4.4711 -5.0078 -5.3063 42 1 3.4806 -5.4816 -0.8106 43 1 5.2660 -5.2961 -0.7811 44 1 3.9903 -7.7253 -1.3143 45 1 5.6149 -7.3143 -1.9299 46 1 5.0269 -10.4269 -2.2214 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754864433.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:40 Heat of formation + Delta-G solvation = 5.606806 kcal Electronic energy + Delta-G solvation = -24446.077586 eV Core-core repulsion = 21143.571939 eV Total energy + Delta-G solvation = -3302.505648 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.32245 -38.00533 -36.40840 -35.38823 -32.59440 -32.30813 -31.15560 -28.84551 -28.20411 -27.48455 -25.39825 -24.44880 -23.48727 -21.48661 -20.72572 -19.65232 -18.69444 -18.47725 -16.76927 -16.10404 -15.76648 -15.64153 -14.82642 -14.72723 -14.42984 -14.23863 -14.04880 -13.79541 -13.49683 -13.30960 -13.08593 -12.48153 -12.37042 -12.19333 -12.12792 -11.93289 -11.82804 -11.54076 -11.15185 -11.06038 -10.98564 -10.86224 -10.69864 -10.49660 -10.44904 -10.08709 -9.93013 -9.82678 -9.56771 -9.28334 -8.93966 -8.54735 -8.16954 -6.78092 -5.68582 -3.03142 2.02050 2.88218 3.22949 3.41509 3.46336 3.48825 4.45879 4.51686 4.71913 4.81378 4.91013 5.01903 5.07087 5.14499 5.29323 5.32880 5.37918 5.41396 5.44989 5.45655 5.62306 5.70264 5.71747 5.73046 5.79561 5.84804 5.88407 6.01028 6.07132 6.11956 6.27620 6.31023 6.41519 6.45644 6.58081 6.70233 6.73409 6.81347 6.92300 7.21359 7.55338 7.71643 7.75560 7.86020 8.27308 8.48437 9.20524 9.85556 10.54862 11.43752 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.030533 B = 0.003634 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.832806 B = 7703.854396 C = 8210.463342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 C -0.120 4.120 4 C -0.071 4.071 5 C -0.132 4.132 6 C 0.513 3.487 7 O -0.533 6.533 8 N -0.602 5.602 9 C 0.111 3.889 10 C -0.130 4.130 11 C -0.116 4.116 12 C 0.158 3.842 13 H 0.017 0.983 14 C 0.114 3.886 15 H 0.078 0.922 16 C -0.126 4.126 17 C 0.170 3.830 18 N -0.592 5.592 19 C -0.228 4.228 20 H 0.078 0.922 21 C -0.007 4.007 22 N -0.916 5.916 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.281 1.281 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.083 0.917 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.036 0.964 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.157 20.811 -0.252 21.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.124 4.124 3 C -0.177 4.177 4 C -0.109 4.109 5 C -0.172 4.172 6 C 0.301 3.699 7 O -0.410 6.410 8 N -0.335 5.335 9 C -0.012 4.012 10 C -0.168 4.168 11 C -0.154 4.154 12 C 0.049 3.951 13 H 0.034 0.966 14 C 0.010 3.990 15 H 0.096 0.904 16 C -0.165 4.165 17 C 0.046 3.954 18 N -0.316 5.316 19 C -0.356 4.356 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.563 5.563 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.206 1.206 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.055 0.945 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.994 20.257 0.329 20.866 hybrid contribution 0.162 -0.756 -0.825 1.131 sum -4.832 19.500 -0.495 20.096 Atomic orbital electron populations 1.23711 0.95273 1.01823 1.02766 1.21814 0.95448 0.95756 0.99386 1.20872 1.00207 0.94502 1.02113 1.20419 1.00893 0.94093 0.95485 1.21649 1.01048 0.95567 0.98965 1.20542 0.79490 0.86652 0.83172 1.90703 1.57119 1.61803 1.31402 1.48049 1.55663 1.23978 1.05803 1.21693 1.00600 0.95266 0.83627 1.21898 1.00148 0.96319 0.98468 1.21422 1.00298 0.94891 0.98830 1.20840 0.94959 0.86492 0.92818 0.96589 1.22519 0.94797 0.81992 0.99701 0.90407 1.22935 1.02722 0.95912 0.94920 1.21746 0.98191 0.90685 0.84822 1.44071 1.67900 1.07584 1.12059 1.18984 1.38702 0.87329 0.90620 0.90429 1.24820 1.02224 0.97234 0.96085 1.69968 1.51652 1.22001 1.12684 0.86146 0.77904 0.81717 0.80276 1.21693 1.21794 1.20647 0.88651 0.88398 0.91470 0.91790 0.91983 0.90466 0.90464 0.89181 0.89282 0.90346 0.91646 0.91824 0.90954 0.91459 0.91857 0.89815 0.92266 0.92663 0.94544 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.71 13.89 29.02 0.40 -1.31 16 2 C -0.12 -1.12 5.31 -101.06 -0.54 -1.66 16 3 C -0.12 -0.88 10.03 36.01 0.36 -0.52 16 4 C -0.07 -0.78 4.66 -27.88 -0.13 -0.91 16 5 C -0.13 -1.42 4.10 -27.88 -0.11 -1.53 16 6 C 0.51 7.88 7.69 -10.98 -0.08 7.80 16 7 O -0.53 -10.14 12.81 5.55 0.07 -10.07 16 8 N -0.60 -9.25 2.90 -163.62 -0.47 -9.73 16 9 C 0.11 1.27 6.32 -3.45 -0.02 1.25 16 10 C -0.13 -1.61 5.92 -26.43 -0.16 -1.76 16 11 C -0.12 -1.97 5.41 -27.25 -0.15 -2.12 16 12 C 0.16 3.33 2.59 -68.08 -0.18 3.15 16 13 H 0.02 0.38 8.04 -51.93 -0.42 -0.04 16 14 C 0.11 2.18 3.37 -66.47 -0.22 1.95 16 15 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 16 C -0.13 -2.72 5.00 -25.15 -0.13 -2.85 16 17 C 0.17 4.35 5.48 -1.64 -0.01 4.34 16 18 N -0.59 -15.33 3.35 -162.88 -0.55 -15.87 16 19 C -0.23 -6.35 9.94 -15.06 -0.15 -6.50 16 20 H 0.08 2.07 7.29 -52.49 -0.38 1.68 16 21 C -0.01 -0.19 5.45 -17.42 -0.09 -0.29 16 22 N -0.92 -27.47 10.69 55.49 0.59 -26.88 16 23 Si 0.91 22.23 29.56 -169.99 -5.03 17.21 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H 0.10 0.70 8.04 -52.49 -0.42 0.27 16 28 H 0.10 0.86 7.99 -52.49 -0.42 0.44 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 31 H 0.06 0.39 8.06 -51.93 -0.42 -0.03 16 32 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 33 H 0.08 0.95 7.94 -51.93 -0.41 0.54 16 34 H 0.09 0.87 7.76 -51.93 -0.40 0.46 16 35 H 0.09 0.78 8.02 -51.93 -0.42 0.36 16 36 H 0.08 0.67 6.18 -51.93 -0.32 0.35 16 37 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.21 7.72 -51.93 -0.40 0.80 16 41 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 42 H 0.08 1.90 6.21 -51.93 -0.32 1.58 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.06 1.57 7.29 -51.93 -0.38 1.19 16 45 H 0.04 1.00 7.85 -51.93 -0.41 0.59 16 46 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 355.67 15.07 5.36 5.36 Total: -1.00 -32.17 355.67 -9.28 -41.45 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -8.06 Total: -0.52 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -1.21 Total: -0.95 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: -0.43 Total: -52.48 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.07 Total: -10.07 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.17 -9.28 -41.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754864433.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.059 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds