Wall clock time and date at job start Tue Mar 31 2020 07:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99959 * 2 1 4 4 C 1.52999 * 109.46956 * 240.00301 * 3 2 1 5 5 C 1.53001 * 109.47220 * 119.99946 * 3 2 1 6 6 C 1.52999 * 109.46784 * 60.00081 * 5 3 2 7 7 C 1.50699 * 109.46844 * 0.02562 * 3 2 1 8 8 O 1.21287 * 119.99882 * 120.00196 * 7 3 2 9 9 N 1.34777 * 120.00296 * 299.99672 * 7 3 2 10 10 C 1.46497 * 120.00440 * 180.02562 * 9 7 3 11 11 C 1.52997 * 109.47557 * 180.02562 * 10 9 7 12 12 H 1.09004 * 115.51650 * 29.58367 * 11 10 9 13 13 C 1.53000 * 117.40827 * 244.23392 * 11 10 9 14 14 H 1.09001 * 119.53944 * 4.09298 * 13 11 10 15 15 C 1.54387 * 118.12289 * 160.79138 * 13 11 10 16 16 N 1.48153 * 104.61823 * 87.18782 * 15 13 11 17 17 C 1.36935 * 127.83896 * 140.38857 * 16 15 13 18 18 H 1.07993 * 120.00243 * 195.57735 * 17 16 15 19 19 C 1.38816 * 119.99782 * 15.58662 * 17 16 15 20 20 N 1.31619 * 120.00138 * 9.09473 * 19 17 16 21 21 Si 1.86801 * 119.99963 * 189.09866 * 19 17 16 22 22 H 1.48507 * 109.46848 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47111 * 119.99530 * 21 19 17 24 24 H 1.48494 * 109.47379 * 239.99942 * 21 19 17 25 25 C 1.48145 * 104.32384 * 320.41492 * 16 15 13 26 26 C 1.52995 * 117.44430 * 175.00155 * 11 10 9 27 27 H 1.08994 * 119.54551 * 355.83981 * 26 11 10 28 28 H 1.07999 * 119.99841 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.99993 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.00134 * 180.02562 * 2 1 3 31 31 H 1.09008 * 109.46663 * 179.97438 * 4 3 2 32 32 H 1.08992 * 109.47225 * 299.99999 * 4 3 2 33 33 H 1.09004 * 109.47309 * 60.00377 * 4 3 2 34 34 H 1.09000 * 109.47041 * 179.97438 * 5 3 2 35 35 H 1.08997 * 109.47168 * 300.00438 * 5 3 2 36 36 H 1.09004 * 109.47475 * 59.99836 * 6 5 3 37 37 H 1.09002 * 109.47318 * 179.97438 * 6 5 3 38 38 H 1.09001 * 109.47668 * 300.00402 * 6 5 3 39 39 H 0.97005 * 119.99917 * 0.02562 * 9 7 3 40 40 H 1.09007 * 109.46670 * 60.00107 * 10 9 7 41 41 H 1.09001 * 109.47109 * 300.00642 * 10 9 7 42 42 H 1.09002 * 110.40648 * 205.96661 * 15 13 11 43 43 H 1.08994 * 110.41019 * 328.28660 * 15 13 11 44 44 H 0.97002 * 119.99810 * 179.97438 * 20 19 17 45 45 H 1.08996 * 110.40663 * 280.80373 * 25 16 15 46 46 H 1.08998 * 110.41030 * 158.36971 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 -1.2493 5 6 2.9431 1.3862 1.2492 6 6 3.9374 0.2233 1.2492 7 6 1.0842 2.4505 0.0006 8 8 1.0896 3.2525 0.9105 9 7 0.2023 2.5837 -1.0098 10 6 -0.7494 3.6975 -1.0095 11 6 -1.6300 3.6163 -2.2581 12 1 -1.8045 2.6124 -2.6451 13 6 -1.5171 4.7541 -3.2747 14 1 -0.7790 5.5413 -3.1205 15 6 -2.0222 4.4993 -4.7112 16 7 -3.4641 4.8365 -4.6658 17 6 -4.2046 5.4885 -5.6154 18 1 -5.1736 5.8920 -5.3615 19 6 -3.7097 5.6308 -6.9045 20 7 -2.6178 4.9901 -7.2647 21 14 -4.5932 6.7316 -8.1280 22 1 -5.7864 7.3335 -7.4804 23 1 -3.6758 7.8099 -8.5761 24 1 -5.0202 5.9261 -9.3002 25 6 -3.9230 4.3088 -3.3598 26 6 -2.7704 4.6285 -2.3836 27 1 -2.9659 5.3220 -1.5658 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 3.4877 2.3304 -1.2495 32 1 3.6513 0.5577 -1.2493 33 1 2.3164 1.3285 -2.1393 34 1 3.4885 2.3300 1.2490 35 1 2.3165 1.3284 2.1392 36 1 4.5640 0.2810 0.3592 37 1 4.5644 0.2812 2.1389 38 1 3.3925 -0.7207 1.2491 39 1 0.1977 1.9421 -1.7374 40 1 -0.2040 4.6413 -1.0098 41 1 -1.3757 3.6400 -0.1192 42 1 -1.5025 5.1470 -5.4173 43 1 -1.8831 3.4530 -4.9830 44 1 -2.2723 5.0892 -8.1657 45 1 -4.0826 3.2323 -3.4198 46 1 -4.8373 4.8126 -3.0464 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755430965.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:03 Heat of formation + Delta-G solvation = 35.570594 kcal Electronic energy + Delta-G solvation = -23553.467742 eV Core-core repulsion = 20252.261422 eV Total energy + Delta-G solvation = -3301.206320 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.63336 -38.85948 -36.68829 -35.10343 -33.43797 -32.19776 -30.83880 -29.71126 -27.38145 -27.09802 -25.57429 -24.73121 -22.09585 -21.52861 -21.08138 -20.16695 -19.28306 -18.72547 -16.86388 -16.71984 -16.38530 -15.97919 -15.02508 -14.69192 -14.62461 -14.24402 -14.13308 -13.81496 -13.48830 -13.10509 -12.95787 -12.69133 -12.62397 -12.41022 -12.23235 -11.96153 -11.82380 -11.80138 -11.27454 -11.11741 -11.09140 -10.85648 -10.71141 -10.68720 -10.30490 -10.11987 -9.82388 -9.76058 -9.65773 -9.37673 -9.10172 -8.91190 -8.65615 -6.88383 -5.81739 -3.15831 1.99576 2.57452 3.08663 3.36436 3.42696 3.45053 4.12968 4.40345 4.42373 4.44603 4.69339 4.81388 4.89535 5.02537 5.10977 5.26822 5.30305 5.33173 5.35995 5.41960 5.47681 5.50436 5.61850 5.69607 5.72653 5.76497 5.84365 5.89838 5.93221 5.94287 5.96867 6.12940 6.21952 6.32619 6.37434 6.43517 6.54422 6.65164 6.70716 6.90718 7.33663 7.46373 7.51516 7.70315 8.16298 8.19130 9.09392 9.72139 10.49135 11.32618 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.032632 B = 0.002839 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.852428 B = 9860.010706 C =10107.120273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C -0.051 4.051 4 C -0.141 4.141 5 C -0.096 4.096 6 C -0.155 4.155 7 C 0.523 3.477 8 O -0.541 6.541 9 N -0.722 5.722 10 C 0.153 3.847 11 C -0.150 4.150 12 H 0.102 0.898 13 C -0.167 4.167 14 H 0.101 0.899 15 C 0.183 3.817 16 N -0.594 5.594 17 C -0.226 4.226 18 H 0.077 0.923 19 C -0.007 4.007 20 N -0.916 5.916 21 Si 0.912 3.088 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.154 3.846 26 C -0.165 4.165 27 H 0.104 0.896 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.121 0.879 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.404 0.596 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.023 0.977 44 H 0.254 0.746 45 H 0.024 0.976 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.856 -10.561 14.380 20.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.165 4.165 3 C -0.054 4.054 4 C -0.198 4.198 5 C -0.134 4.134 6 C -0.212 4.212 7 C 0.310 3.690 8 O -0.418 6.418 9 N -0.374 5.374 10 C 0.029 3.971 11 C -0.169 4.169 12 H 0.120 0.880 13 C -0.187 4.187 14 H 0.119 0.881 15 C 0.058 3.942 16 N -0.318 5.318 17 C -0.354 4.354 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.562 5.562 21 Si 0.743 3.257 22 H -0.204 1.204 23 H -0.216 1.216 24 H -0.217 1.217 25 C 0.028 3.972 26 C -0.186 4.186 27 H 0.122 0.878 28 H 0.128 0.872 29 H 0.121 0.879 30 H 0.138 0.862 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.239 0.761 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.040 0.960 44 H 0.064 0.936 45 H 0.042 0.958 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.806 -9.862 14.743 20.770 hybrid contribution -0.446 0.226 -1.013 1.130 sum 10.360 -9.636 13.731 19.716 Atomic orbital electron populations 1.24395 0.96234 1.03322 0.99504 1.22711 0.95678 0.96855 1.01289 1.20008 0.95077 0.91752 0.98593 1.21896 0.99536 1.03050 0.95349 1.21319 0.96873 0.99332 0.95834 1.21898 0.99031 0.98339 1.01913 1.20420 0.80893 0.86049 0.81688 1.90693 1.70981 1.44171 1.35949 1.46259 1.35651 1.30240 1.25248 1.20873 0.89920 0.89300 0.96971 1.22521 1.00749 0.96484 0.97143 0.87952 1.24367 0.99731 0.99061 0.95568 0.88056 1.21052 0.85136 0.98502 0.89526 1.45215 1.04836 1.65807 1.15932 1.19049 1.00670 1.27309 0.88388 0.90517 1.24898 0.98502 1.00253 0.96698 1.69907 1.23610 1.44107 1.18577 0.86043 0.78723 0.79915 0.81055 1.20357 1.21606 1.21691 1.21140 0.93631 0.96223 0.86217 1.23844 0.92052 1.01632 1.01033 0.87817 0.87184 0.87915 0.86153 0.91735 0.90889 0.91779 0.91069 0.91241 0.92275 0.92558 0.92472 0.76053 0.91422 0.91329 0.89275 0.95951 0.93634 0.95785 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.79 13.17 29.01 0.38 -1.41 16 2 C -0.15 -1.24 7.99 -36.03 -0.29 -1.53 16 3 C -0.05 -0.49 0.62 -156.81 -0.10 -0.59 16 4 C -0.14 -1.15 8.00 37.16 0.30 -0.85 16 5 C -0.10 -0.90 4.27 -26.73 -0.11 -1.01 16 6 C -0.15 -1.06 9.30 37.16 0.35 -0.71 16 7 C 0.52 6.68 5.34 -10.99 -0.06 6.62 16 8 O -0.54 -8.89 15.98 5.55 0.09 -8.80 16 9 N -0.72 -8.56 3.72 -60.29 -0.22 -8.79 16 10 C 0.15 2.06 5.95 -4.04 -0.02 2.03 16 11 C -0.15 -2.26 5.39 -90.62 -0.49 -2.75 16 12 H 0.10 1.53 8.04 -51.93 -0.42 1.12 16 13 C -0.17 -3.11 6.74 -89.22 -0.60 -3.72 16 14 H 0.10 1.82 8.12 -51.93 -0.42 1.40 16 15 C 0.18 4.34 5.70 -2.41 -0.01 4.33 16 16 N -0.59 -15.13 3.38 -168.86 -0.57 -15.70 16 17 C -0.23 -6.27 10.35 -15.06 -0.16 -6.43 16 18 H 0.08 2.07 7.84 -52.49 -0.41 1.65 16 19 C -0.01 -0.18 5.40 -17.43 -0.09 -0.28 16 20 N -0.92 -26.60 10.86 55.49 0.60 -26.00 16 21 Si 0.91 21.85 29.56 -169.99 -5.03 16.82 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 C 0.15 3.20 7.04 -2.40 -0.02 3.18 16 26 C -0.17 -2.89 6.85 -89.21 -0.61 -3.50 16 27 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 28 H 0.11 1.17 5.18 -52.49 -0.27 0.90 16 29 H 0.10 0.79 8.06 -52.48 -0.42 0.37 16 30 H 0.12 0.81 7.00 -52.49 -0.37 0.44 16 31 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 32 H 0.07 0.47 6.43 -51.93 -0.33 0.14 16 33 H 0.06 0.51 7.57 -51.93 -0.39 0.12 16 34 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 35 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.06 0.36 6.43 -51.93 -0.33 0.03 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.36 6.62 -51.93 -0.34 0.01 16 39 H 0.40 4.19 7.16 -40.82 -0.29 3.90 16 40 H 0.07 0.98 7.94 -51.93 -0.41 0.57 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.09 2.37 6.51 -51.93 -0.34 2.04 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 361.36 15.07 5.45 5.45 Total: -1.00 -31.23 361.36 -8.92 -40.15 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -7.70 Total: 3.50 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -1.54 Total: -6.62 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.19 Total: -50.49 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.23 -8.92 -40.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755430965.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.716 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds