Wall clock time and date at job start Tue Mar 31 2020 07:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 120.00192 * 2 1 4 4 C 1.53004 * 109.46965 * 234.54509 * 3 2 1 5 5 C 1.52996 * 109.47258 * 354.54306 * 3 2 1 6 6 C 1.52999 * 109.47166 * 185.94806 * 5 3 2 7 7 C 1.50701 * 109.47489 * 114.54784 * 3 2 1 8 8 O 1.21277 * 120.00028 * 239.99964 * 7 3 2 9 9 N 1.34783 * 119.99883 * 59.99817 * 7 3 2 10 10 C 1.46501 * 119.99847 * 180.02562 * 9 7 3 11 11 C 1.53001 * 109.46917 * 179.97438 * 10 9 7 12 12 H 1.09001 * 115.51714 * 29.58228 * 11 10 9 13 13 C 1.53001 * 117.44306 * 244.23759 * 11 10 9 14 14 H 1.08995 * 119.53382 * 4.11861 * 13 11 10 15 15 C 1.54383 * 118.12230 * 160.81150 * 13 11 10 16 16 N 1.48145 * 104.62049 * 87.19050 * 15 13 11 17 17 C 1.36932 * 127.84112 * 140.43426 * 16 15 13 18 18 H 1.08003 * 120.00228 * 194.21278 * 17 16 15 19 19 C 1.38818 * 120.00000 * 14.20427 * 17 16 15 20 20 N 1.31617 * 119.99774 * 8.71520 * 19 17 16 21 21 Si 1.86794 * 120.00128 * 188.71120 * 19 17 16 22 22 H 1.48500 * 109.47192 * 60.00438 * 21 19 17 23 23 H 1.48502 * 109.47077 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47460 * 300.00043 * 21 19 17 25 25 C 1.48153 * 104.32227 * 320.41597 * 16 15 13 26 26 C 1.53000 * 117.44266 * 174.99598 * 11 10 9 27 27 H 1.09005 * 119.53898 * 355.88733 * 26 11 10 28 28 H 1.07996 * 120.00176 * 182.29926 * 1 2 3 29 29 H 1.08005 * 119.99235 * 2.30124 * 1 2 3 30 30 H 1.08000 * 119.99372 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.47688 * 179.97438 * 4 3 2 32 32 H 1.08998 * 109.47468 * 300.00407 * 4 3 2 33 33 H 1.09010 * 109.46684 * 59.99815 * 4 3 2 34 34 H 1.08996 * 109.46863 * 65.95070 * 5 3 2 35 35 H 1.09002 * 109.47340 * 305.94767 * 5 3 2 36 36 H 1.08994 * 109.47326 * 67.67946 * 6 5 3 37 37 H 1.09005 * 109.46974 * 307.67857 * 6 5 3 38 38 H 1.09001 * 109.47347 * 187.67910 * 6 5 3 39 39 H 0.96996 * 119.99949 * 359.97438 * 9 7 3 40 40 H 1.09004 * 109.46747 * 299.99225 * 10 9 7 41 41 H 1.09000 * 109.46994 * 59.99402 * 10 9 7 42 42 H 1.09001 * 110.40779 * 205.97477 * 15 13 11 43 43 H 1.09005 * 110.40877 * 328.28680 * 15 13 11 44 44 H 0.97000 * 120.00198 * 180.02562 * 20 19 17 45 45 H 1.08996 * 110.40233 * 280.79799 * 25 16 15 46 46 H 1.08994 * 110.40345 * 158.37252 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0432 1.3283 -1.1751 5 6 1.0751 2.4647 -0.1372 6 6 1.8465 3.7775 -0.2862 7 6 2.8260 1.4450 1.2924 8 8 2.6008 2.3801 2.0310 9 7 3.7580 0.5308 1.6273 10 6 4.4988 0.6666 2.8839 11 6 5.4870 -0.4934 3.0213 12 1 5.8660 -0.9008 2.0840 13 6 5.2699 -1.4715 4.1776 14 1 4.3960 -1.3594 4.8193 15 6 5.9372 -2.8609 4.0905 16 7 7.2892 -2.6630 4.6629 17 6 7.9876 -3.5107 5.4807 18 1 8.8587 -3.1544 6.0103 19 6 7.5757 -4.8281 5.6290 20 7 6.6237 -5.3106 4.8588 21 14 8.3725 -5.9159 6.9217 22 1 8.1636 -5.3212 8.2662 23 1 7.7596 -7.2677 6.8771 24 1 9.8283 -6.0237 6.6489 25 6 7.7144 -1.3399 4.1496 26 6 6.4417 -0.4686 4.2166 27 1 6.4407 0.3905 4.8875 28 1 -0.5400 -0.9345 0.0375 29 1 -0.5399 0.9347 -0.0376 30 1 1.8499 -0.9354 0.0004 31 1 3.5880 2.2723 -1.1754 32 1 3.7474 0.5021 -1.0775 33 1 2.4917 1.2270 -2.1099 34 1 0.4453 2.5123 0.7512 35 1 0.4510 2.3081 -1.0171 36 1 2.3699 3.7849 -1.2423 37 1 2.5695 3.8681 0.5245 38 1 1.1498 4.6149 -0.2470 39 1 3.9378 -0.2173 1.0367 40 1 5.0438 1.6106 2.8842 41 1 3.8007 0.6498 3.7209 42 1 5.3782 -3.5886 4.6787 43 1 6.0060 -3.1851 3.0520 44 1 6.3356 -6.2310 4.9626 45 1 8.0626 -1.4256 3.1203 46 1 8.4962 -0.9201 4.7825 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755430968.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:08 Heat of formation + Delta-G solvation = 32.421919 kcal Electronic energy + Delta-G solvation = -23484.205618 eV Core-core repulsion = 20182.862761 eV Total energy + Delta-G solvation = -3301.342857 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.51869 -38.87139 -36.76923 -35.01940 -33.36990 -32.08579 -30.93839 -29.73429 -27.37685 -27.08924 -25.41189 -24.63617 -22.61397 -21.19178 -21.10849 -20.09963 -19.28069 -18.65236 -16.93605 -16.79192 -16.21442 -15.75297 -15.04269 -14.83276 -14.61209 -14.55618 -14.03379 -13.72678 -13.30412 -13.17739 -12.84861 -12.74882 -12.66821 -12.41886 -12.16889 -11.93083 -11.82557 -11.45658 -11.25403 -11.09975 -10.94462 -10.83049 -10.75591 -10.67683 -10.30356 -10.17370 -10.12088 -9.74340 -9.45300 -9.36825 -9.06968 -8.91700 -8.65155 -6.89488 -5.80558 -3.14873 1.92538 2.67175 3.17472 3.37809 3.42428 3.43568 4.14935 4.34313 4.44757 4.46682 4.66845 4.82429 4.91650 5.06143 5.16370 5.30690 5.32443 5.35863 5.36311 5.42237 5.48042 5.51143 5.59216 5.72319 5.76144 5.79182 5.87563 5.91520 5.93533 5.94942 6.05195 6.22360 6.22847 6.33277 6.41688 6.46212 6.55496 6.65207 6.71399 6.90967 7.34155 7.50025 7.51839 7.70637 8.20068 8.20644 9.09904 9.72613 10.49128 11.33182 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.030430 B = 0.002862 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.929549 B = 9781.925480 C =10275.182176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.152 4.152 3 C -0.052 4.052 4 C -0.139 4.139 5 C -0.100 4.100 6 C -0.159 4.159 7 C 0.527 3.473 8 O -0.539 6.539 9 N -0.720 5.720 10 C 0.155 3.845 11 C -0.150 4.150 12 H 0.102 0.898 13 C -0.167 4.167 14 H 0.101 0.899 15 C 0.182 3.818 16 N -0.595 5.595 17 C -0.227 4.227 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.917 5.917 21 Si 0.914 3.086 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.155 3.845 26 C -0.166 4.166 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.401 0.599 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.021 0.979 44 H 0.255 0.745 45 H 0.024 0.976 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.290 13.124 -12.648 20.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.170 4.170 3 C -0.055 4.055 4 C -0.197 4.197 5 C -0.137 4.137 6 C -0.216 4.216 7 C 0.313 3.687 8 O -0.416 6.416 9 N -0.371 5.371 10 C 0.031 3.969 11 C -0.169 4.169 12 H 0.120 0.880 13 C -0.187 4.187 14 H 0.119 0.881 15 C 0.056 3.944 16 N -0.318 5.318 17 C -0.355 4.355 18 H 0.094 0.906 19 C -0.203 4.203 20 N -0.564 5.564 21 Si 0.744 3.256 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.210 1.210 25 C 0.028 3.972 26 C -0.186 4.186 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.134 0.866 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.236 0.764 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.111 0.889 43 H 0.039 0.961 44 H 0.065 0.935 45 H 0.042 0.958 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.393 13.512 -11.982 20.836 hybrid contribution 0.430 -1.049 0.407 1.205 sum -9.962 12.464 -11.574 19.712 Atomic orbital electron populations 1.24059 0.96002 1.02485 0.99309 1.22769 0.96176 0.96617 1.01439 1.19949 0.96296 0.95495 0.93755 1.21874 0.98319 1.02837 0.96631 1.21442 0.97030 0.93166 1.02083 1.21943 1.01078 0.96471 1.02098 1.20333 0.79402 0.81857 0.87149 1.90663 1.66283 1.32115 1.52531 1.46039 1.39522 1.28184 1.23372 1.20857 0.92962 0.97411 0.85638 1.22524 1.00627 0.98816 0.94935 0.88011 1.24374 0.99234 0.95550 0.99564 0.88065 1.21093 0.85914 0.90327 0.97020 1.45208 1.14273 1.16614 1.55719 1.18974 1.08928 0.89906 1.17701 0.90561 1.24873 0.99536 0.96385 0.99539 1.69870 1.31970 1.15003 1.39528 0.86179 0.78615 0.79600 0.81247 1.21075 1.21535 1.20999 1.21134 0.92583 0.86749 0.96710 1.23845 0.94367 1.00772 0.99630 0.87819 0.88020 0.87706 0.86590 0.91428 0.91914 0.91300 0.91010 0.91321 0.93073 0.90888 0.92937 0.76404 0.91359 0.91476 0.88936 0.96076 0.93525 0.95805 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 13.70 29.01 0.40 -1.10 16 2 C -0.15 -1.35 8.54 -36.03 -0.31 -1.66 16 3 C -0.05 -0.49 0.62 -156.81 -0.10 -0.59 16 4 C -0.14 -1.07 7.85 37.16 0.29 -0.78 16 5 C -0.10 -0.92 3.31 -26.73 -0.09 -1.01 16 6 C -0.16 -1.51 8.93 37.16 0.33 -1.17 16 7 C 0.53 6.63 6.12 -10.98 -0.07 6.56 16 8 O -0.54 -8.58 14.07 5.56 0.08 -8.50 16 9 N -0.72 -8.54 5.35 -60.29 -0.32 -8.86 16 10 C 0.15 2.10 5.95 -4.04 -0.02 2.07 16 11 C -0.15 -2.28 5.39 -90.62 -0.49 -2.76 16 12 H 0.10 1.52 8.04 -51.93 -0.42 1.11 16 13 C -0.17 -3.14 6.74 -89.22 -0.60 -3.74 16 14 H 0.10 1.84 8.12 -51.93 -0.42 1.42 16 15 C 0.18 4.32 5.73 -2.41 -0.01 4.31 16 16 N -0.59 -15.18 3.38 -168.86 -0.57 -15.75 16 17 C -0.23 -6.31 10.36 -15.06 -0.16 -6.47 16 18 H 0.08 2.04 7.84 -52.48 -0.41 1.63 16 19 C -0.01 -0.18 5.41 -17.43 -0.09 -0.28 16 20 N -0.92 -26.66 10.77 55.49 0.60 -26.06 16 21 Si 0.91 21.86 29.56 -169.99 -5.03 16.84 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.15 3.21 7.04 -2.41 -0.02 3.20 16 26 C -0.17 -2.92 6.85 -89.22 -0.61 -3.53 16 27 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 28 H 0.10 0.74 8.06 -52.49 -0.42 0.31 16 29 H 0.10 0.80 5.71 -52.48 -0.30 0.50 16 30 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.07 0.54 6.51 -51.93 -0.34 0.20 16 32 H 0.06 0.44 7.56 -51.93 -0.39 0.05 16 33 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 34 H 0.07 0.76 7.43 -51.93 -0.39 0.38 16 35 H 0.07 0.52 7.35 -51.93 -0.38 0.14 16 36 H 0.05 0.41 6.81 -51.93 -0.35 0.06 16 37 H 0.07 0.87 5.94 -51.93 -0.31 0.56 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.40 4.02 7.71 -40.82 -0.31 3.70 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.07 0.99 7.94 -51.93 -0.41 0.58 16 42 H 0.09 2.47 6.40 -51.93 -0.33 2.14 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 361.79 15.07 5.45 5.45 Total: -1.00 -31.20 361.79 -9.05 -40.25 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -7.71 Total: 3.58 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -1.55 Total: -6.95 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.30 Total: -50.67 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.08 Total: -8.50 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.20 -9.05 -40.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755430968.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.670 kcal (2) G-P(sol) polarization free energy of solvation -31.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds