Wall clock time and date at job start Tue Mar 31 2020 07:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31010 * 1 3 3 C 1.51575 * 135.78251 * 2 1 4 4 C 1.53830 * 86.75666 * 154.84352 * 3 2 1 5 5 C 1.52996 * 113.66072 * 270.21954 * 4 3 2 6 6 C 1.50707 * 113.65997 * 139.26701 * 4 3 2 7 7 O 1.21279 * 119.99755 * 1.66796 * 6 4 3 8 8 N 1.34769 * 119.99945 * 181.66418 * 6 4 3 9 9 C 1.46509 * 119.99807 * 179.97438 * 8 6 4 10 10 H 1.09000 * 109.45004 * 324.96807 * 9 8 6 11 11 C 1.53040 * 109.45609 * 84.93495 * 9 8 6 12 12 C 1.53194 * 109.31605 * 58.65777 * 11 9 8 13 13 N 1.46920 * 108.77576 * 54.63172 * 12 11 9 14 14 C 1.36939 * 120.63146 * 126.39465 * 13 12 11 15 15 H 1.08001 * 119.99964 * 209.01591 * 14 13 12 16 16 C 1.38809 * 119.99825 * 29.01411 * 14 13 12 17 17 N 1.31617 * 120.00017 * 15.02865 * 16 14 13 18 18 Si 1.86798 * 119.99825 * 195.02036 * 16 14 13 19 19 H 1.48504 * 109.46878 * 60.00655 * 18 16 14 20 20 H 1.48506 * 109.47084 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.47611 * 300.00179 * 18 16 14 22 22 C 1.46933 * 118.74206 * 306.39454 * 13 12 11 23 23 H 1.09000 * 109.69854 * 293.75516 * 22 13 12 24 24 C 1.52995 * 109.58964 * 173.39590 * 22 13 12 25 25 C 1.53039 * 109.46153 * 205.00208 * 9 8 6 26 26 C 1.51768 * 135.74779 * 179.88483 * 2 1 3 27 27 H 1.08000 * 119.99813 * 359.97438 * 1 2 3 28 28 H 1.07994 * 119.99788 * 180.02562 * 1 2 3 29 29 H 1.08998 * 113.66575 * 40.37663 * 3 2 1 30 30 H 1.09004 * 113.66432 * 269.30917 * 3 2 1 31 31 H 1.09005 * 109.47187 * 298.33391 * 5 4 3 32 32 H 1.09001 * 109.47176 * 58.33047 * 5 4 3 33 33 H 1.08998 * 109.47248 * 178.33249 * 5 4 3 34 34 H 0.97002 * 120.00394 * 0.02562 * 8 6 4 35 35 H 1.09004 * 109.49877 * 178.60622 * 11 9 8 36 36 H 1.09002 * 109.50039 * 298.70146 * 11 9 8 37 37 H 1.08998 * 109.59087 * 174.42253 * 12 11 9 38 38 H 1.09002 * 109.58323 * 294.70668 * 12 11 9 39 39 H 0.96997 * 119.99877 * 180.02562 * 17 16 14 40 40 H 1.09003 * 109.46978 * 300.71269 * 24 22 13 41 41 H 1.08997 * 109.46924 * 180.71142 * 24 22 13 42 42 H 1.09001 * 109.47042 * 60.70939 * 24 22 13 43 43 H 1.08999 * 109.49978 * 181.39536 * 25 9 8 44 44 H 1.08999 * 109.49712 * 61.29431 * 25 9 8 45 45 H 1.09000 * 113.66481 * 90.72492 * 26 2 1 46 46 H 1.08999 * 113.72840 * 319.60034 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.3964 1.0571 0.0000 4 6 3.3035 0.0000 0.6529 5 6 3.2461 0.0015 2.1818 6 6 4.7130 -0.0001 0.1194 7 8 5.0425 0.8077 -0.7231 8 7 5.6073 -0.8977 0.5786 9 6 6.9773 -0.8981 0.0596 10 1 6.9655 -0.6283 -0.9965 11 6 7.8170 0.1187 0.8362 12 6 7.8030 -0.2439 2.3246 13 7 8.2482 -1.6358 2.4764 14 6 9.2784 -1.9505 3.3219 15 1 9.9043 -2.8061 3.1154 16 6 9.5184 -1.1697 4.4442 17 7 8.6037 -0.3211 4.8633 18 14 11.1393 -1.3236 5.3599 19 1 12.2590 -0.9885 4.4437 20 1 11.1466 -0.3889 6.5138 21 1 11.3006 -2.7159 5.8503 22 6 7.5671 -2.6837 1.7038 23 1 6.5363 -2.7802 2.0447 24 6 8.2964 -4.0155 1.8919 25 6 7.5838 -2.2937 0.2224 26 6 2.3972 -1.0591 0.0021 27 1 -0.5400 0.9353 0.0004 28 1 -0.5399 -0.9353 0.0004 29 1 2.1796 1.9072 0.6467 30 1 2.7184 1.3536 -0.9983 31 1 3.5890 0.9657 2.5573 32 1 2.2202 -0.1710 2.5070 33 1 3.8883 -0.7889 2.5702 34 1 5.3436 -1.5440 1.2522 35 1 8.8425 0.1013 0.4672 36 1 7.3980 1.1158 0.7007 37 1 8.4781 0.4170 2.8681 38 1 6.7918 -0.1367 2.7172 39 1 8.7716 0.2247 5.6474 40 1 9.3283 -3.9154 1.5552 41 1 7.7970 -4.7887 1.3080 42 1 8.2834 -4.2911 2.9464 43 1 8.6115 -2.2885 -0.1408 44 1 6.9988 -3.0137 -0.3498 45 1 2.7194 -1.3573 -0.9955 46 1 2.1811 -1.9081 0.6506 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947701310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:29 Heat of formation + Delta-G solvation = 19.653547 kcal Electronic energy + Delta-G solvation = -24833.620797 eV Core-core repulsion = 21531.724262 eV Total energy + Delta-G solvation = -3301.896535 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.58419 -38.63499 -37.09719 -34.26882 -32.41329 -31.84960 -30.84030 -29.52566 -27.69412 -26.40211 -25.99189 -25.02248 -23.48807 -21.94364 -20.64159 -19.67363 -18.58377 -17.82893 -16.81816 -16.39427 -15.51777 -15.19238 -15.12907 -14.60925 -14.39997 -14.17567 -13.91934 -13.71288 -13.45350 -13.14808 -12.78818 -12.46378 -12.38364 -12.18520 -11.93039 -11.78825 -11.45341 -11.35695 -11.20408 -11.00676 -10.92271 -10.69467 -10.62402 -10.41980 -10.29149 -10.14418 -10.08409 -9.67394 -9.41092 -9.29820 -9.16628 -8.55908 -8.45540 -6.64384 -5.78310 -3.22408 2.09490 2.91096 3.37141 3.43561 3.44294 3.59022 4.25187 4.41671 4.47402 4.48045 4.91204 5.08066 5.29139 5.32079 5.35751 5.42870 5.54358 5.61288 5.63082 5.67067 5.69637 5.79669 5.87117 5.89904 6.00183 6.09097 6.12182 6.22659 6.25773 6.28585 6.30373 6.38393 6.44088 6.57964 6.64634 6.78619 6.80306 6.95782 7.03548 7.05316 7.39087 7.69561 7.81033 7.91636 8.45639 8.57704 9.21515 9.85042 10.41450 11.29672 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.023143 B = 0.004186 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.575046 B = 6687.649956 C = 6995.732056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.142 4.142 3 C -0.082 4.082 4 C -0.103 4.103 5 C -0.126 4.126 6 C 0.529 3.471 7 O -0.550 6.550 8 N -0.709 5.709 9 C 0.153 3.847 10 H 0.071 0.929 11 C -0.153 4.153 12 C 0.176 3.824 13 N -0.586 5.586 14 C -0.252 4.252 15 H 0.069 0.931 16 C 0.004 3.996 17 N -0.903 5.903 18 Si 0.900 3.100 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.283 1.283 22 C 0.169 3.831 23 H 0.019 0.981 24 C -0.137 4.137 25 C -0.139 4.139 26 C -0.090 4.090 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.401 0.599 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.018 0.982 39 H 0.253 0.747 40 H 0.054 0.946 41 H 0.038 0.962 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.054 0.946 45 H 0.094 0.906 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.135 -2.251 -8.372 14.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.142 4.142 3 C -0.119 4.119 4 C -0.107 4.107 5 C -0.184 4.184 6 C 0.315 3.685 7 O -0.428 6.428 8 N -0.360 5.360 9 C 0.049 3.951 10 H 0.089 0.911 11 C -0.194 4.194 12 C 0.050 3.950 13 N -0.310 5.310 14 C -0.381 4.381 15 H 0.087 0.913 16 C -0.195 4.195 17 N -0.547 5.547 18 Si 0.730 3.270 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.210 1.210 22 C 0.062 3.938 23 H 0.036 0.964 24 C -0.195 4.195 25 C -0.178 4.178 26 C -0.127 4.127 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.096 0.904 30 H 0.123 0.877 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.236 0.764 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.036 0.964 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.113 0.887 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.843 -1.584 -8.800 14.839 hybrid contribution 0.744 -0.280 0.940 1.231 sum -11.099 -1.864 -7.859 13.727 Atomic orbital electron populations 1.22827 0.93357 1.02005 1.03283 1.22877 0.93807 0.98246 0.99305 1.22235 0.91984 0.95582 1.02098 1.21950 0.91684 0.99614 0.97416 1.21575 1.02563 1.03419 0.90828 1.20163 0.86294 0.80555 0.81517 1.90644 1.79992 1.38868 1.33290 1.46147 1.11276 1.35309 1.43222 1.20883 0.80407 0.96424 0.97400 0.91133 1.22552 0.98779 0.97395 1.00633 1.20708 0.98376 0.86381 0.89491 1.44119 1.37960 1.00681 1.48210 1.19131 1.04954 1.12971 1.01057 0.91337 1.25061 0.97782 1.00280 0.96363 1.69999 1.32170 1.27525 1.25032 0.86408 0.84025 0.77389 0.79141 1.21088 1.21711 1.20964 1.20370 0.94349 0.89703 0.89394 0.96364 1.21805 1.00236 0.95675 1.01737 1.22363 1.00914 0.94858 0.99698 1.22329 0.93173 0.95909 1.01265 0.87706 0.87778 0.90420 0.87721 0.91399 0.91566 0.91403 0.76352 0.91931 0.92876 0.89602 0.96400 0.93679 0.92668 0.94340 0.91975 0.90741 0.92691 0.88749 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 14.72 29.01 0.43 -1.18 16 2 C -0.14 -1.52 6.60 -100.20 -0.66 -2.18 16 3 C -0.08 -1.00 6.97 -27.02 -0.19 -1.19 16 4 C -0.10 -1.33 1.26 -154.88 -0.19 -1.52 16 5 C -0.13 -1.56 8.99 37.16 0.33 -1.23 16 6 C 0.53 8.55 6.88 -10.99 -0.08 8.47 16 7 O -0.55 -10.63 15.57 5.56 0.09 -10.54 16 8 N -0.71 -11.34 4.16 -53.76 -0.22 -11.56 16 9 C 0.15 2.66 2.78 -67.89 -0.19 2.47 16 10 H 0.07 1.24 7.58 -51.93 -0.39 0.85 16 11 C -0.15 -3.06 5.77 -26.61 -0.15 -3.21 16 12 C 0.18 4.10 5.03 -3.71 -0.02 4.08 16 13 N -0.59 -13.74 2.99 -164.77 -0.49 -14.23 16 14 C -0.25 -6.54 8.61 -15.06 -0.13 -6.67 16 15 H 0.07 1.74 6.20 -52.49 -0.33 1.41 16 16 C 0.00 0.10 4.96 -17.43 -0.09 0.01 16 17 N -0.90 -25.51 11.14 55.49 0.62 -24.90 16 18 Si 0.90 21.31 29.58 -169.99 -5.03 16.29 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.17 3.23 3.20 -67.60 -0.22 3.01 16 23 H 0.02 0.36 6.65 -51.93 -0.35 0.01 16 24 C -0.14 -2.43 7.94 37.15 0.30 -2.13 16 25 C -0.14 -2.29 5.07 -26.61 -0.13 -2.42 16 26 C -0.09 -0.97 7.19 -26.92 -0.19 -1.17 16 27 H 0.10 0.84 8.06 -52.49 -0.42 0.41 16 28 H 0.10 0.81 8.06 -52.49 -0.42 0.38 16 29 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 30 H 0.10 1.39 7.44 -51.93 -0.39 1.01 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.71 7.70 -51.93 -0.40 0.31 16 33 H 0.07 0.87 7.12 -51.93 -0.37 0.50 16 34 H 0.40 6.11 5.86 -40.82 -0.24 5.87 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.09 2.29 6.06 -51.93 -0.31 1.98 16 38 H 0.02 0.43 7.74 -51.93 -0.40 0.03 16 39 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.05 1.00 7.40 -51.93 -0.38 0.61 16 41 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 1.20 7.66 -51.93 -0.40 0.80 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.09 1.04 8.09 -51.93 -0.42 0.62 16 46 H 0.08 0.79 8.10 -51.93 -0.42 0.36 16 LS Contribution 355.69 15.07 5.36 5.36 Total: -1.00 -29.36 355.69 -8.60 -37.96 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -7.74 Total: 6.49 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -1.19 Total: -4.85 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.10 Total: -50.69 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.36 -8.60 -37.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947701310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.612 kcal (2) G-P(sol) polarization free energy of solvation -29.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds