Wall clock time and date at job start Tue Mar 31 2020 06:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46908 * 2 1 4 4 N 1.46903 * 109.46949 * 180.91731 * 3 2 1 5 5 C 1.46896 * 111.00008 * 299.24011 * 4 3 2 6 6 C 1.50697 * 109.47343 * 293.96143 * 5 4 3 7 7 H 1.08000 * 120.00046 * 355.03959 * 6 5 4 8 8 C 1.37883 * 120.00213 * 175.04321 * 6 5 4 9 9 N 1.31514 * 119.99926 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99860 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47287 * 59.99473 * 10 8 6 12 12 H 1.48504 * 109.46769 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47031 * 299.99180 * 10 8 6 14 14 C 1.46903 * 111.00159 * 63.19362 * 4 3 2 15 15 C 1.50706 * 109.46723 * 66.04833 * 14 4 3 16 16 C 1.38825 * 120.35352 * 269.97620 * 15 14 4 17 17 C 1.38376 * 118.48433 * 179.75443 * 16 15 14 18 18 C 1.38912 * 119.11187 * 0.51176 * 17 16 15 19 19 O 1.35680 * 119.68618 * 179.75236 * 18 17 16 20 20 C 1.42904 * 117.00111 * 179.72296 * 19 18 17 21 21 C 1.52994 * 109.47300 * 270.00364 * 20 19 18 22 22 C 1.53001 * 109.46864 * 149.99913 * 20 19 18 23 23 N 1.32250 * 120.63213 * 359.47670 * 18 17 16 24 24 C 1.31964 * 121.64150 * 0.27674 * 23 18 17 25 25 H 1.08993 * 109.47059 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46789 * 300.00362 * 1 2 3 27 27 H 1.08999 * 109.46740 * 60.00117 * 1 2 3 28 28 H 1.09000 * 109.47298 * 240.00163 * 2 1 3 29 29 H 1.08997 * 109.47202 * 119.99274 * 2 1 3 30 30 H 1.08993 * 109.47298 * 60.91548 * 3 2 1 31 31 H 1.09004 * 109.46936 * 300.91181 * 3 2 1 32 32 H 1.09012 * 109.47183 * 53.95788 * 5 4 3 33 33 H 1.08999 * 109.47571 * 173.95430 * 5 4 3 34 34 H 0.96996 * 119.99748 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.47129 * 306.04958 * 14 4 3 36 36 H 1.08996 * 109.47110 * 186.04350 * 14 4 3 37 37 H 1.08004 * 120.75703 * 0.02562 * 16 15 14 38 38 H 1.08007 * 120.44296 * 180.26125 * 17 16 15 39 39 H 1.09001 * 109.47072 * 30.00581 * 20 19 18 40 40 H 1.09003 * 109.47526 * 59.99896 * 21 20 19 41 41 H 1.09004 * 109.46826 * 179.97438 * 21 20 19 42 42 H 1.08994 * 109.47331 * 299.99760 * 21 20 19 43 43 H 1.08995 * 109.46943 * 180.02562 * 22 20 19 44 44 H 1.08995 * 109.47293 * 300.00394 * 22 20 19 45 45 H 1.09001 * 109.46730 * 60.00459 * 22 20 19 46 46 H 1.08007 * 119.57965 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5089 1.4426 -0.0222 5 6 4.0533 0.7664 1.1628 6 6 3.7132 1.5626 2.3962 7 1 3.2195 2.5187 2.3027 8 6 4.0323 1.0707 3.6441 9 7 4.6330 -0.0937 3.7581 10 14 3.6113 2.0581 5.1729 11 1 2.1430 2.2711 5.2359 12 1 4.0555 1.3153 6.3797 13 1 4.3004 3.3724 5.1186 14 6 4.0168 0.8307 -1.2573 15 6 3.6404 1.6913 -2.4358 16 6 2.4415 1.4813 -3.1034 17 6 2.1323 2.2974 -4.1773 18 6 3.0315 3.2864 -4.5554 19 8 2.7424 4.0899 -5.6098 20 6 3.7047 5.0917 -5.9451 21 6 3.3914 6.3773 -5.1773 22 6 3.6492 5.3692 -7.4487 23 7 4.1642 3.4558 -3.8942 24 6 4.4843 2.6966 -2.8634 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6902 1.9516 0.8980 31 1 1.6633 1.9611 -0.8817 32 1 3.6202 -0.2307 1.2432 33 1 5.1363 0.6856 1.0696 34 1 4.8578 -0.4396 4.6359 35 1 3.5806 -0.1609 -1.3775 36 1 5.1020 0.7460 -1.2012 37 1 1.7635 0.7015 -2.7891 38 1 1.2060 2.1646 -4.7167 39 1 4.7017 4.7421 -5.6768 40 1 3.4309 6.1797 -4.1060 41 1 4.1257 7.1413 -5.4327 42 1 2.3945 6.7270 -5.4456 43 1 4.3835 6.1329 -7.7046 44 1 3.8724 4.4532 -7.9957 45 1 2.6522 5.7188 -7.7170 46 1 5.4181 2.8644 -2.3472 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231534708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:39 Heat of formation + Delta-G solvation = -11.976787 kcal Electronic energy + Delta-G solvation = -23645.243342 eV Core-core repulsion = 20341.975212 eV Total energy + Delta-G solvation = -3303.268130 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.60927 -38.59456 -37.14331 -33.44282 -32.88316 -32.58772 -31.93228 -30.36488 -27.45368 -27.07050 -26.10861 -24.06694 -23.88808 -22.12664 -21.89020 -21.08950 -19.24241 -18.44632 -16.74834 -16.27095 -15.72190 -15.23221 -15.05308 -14.73906 -14.61785 -14.46541 -14.12247 -13.83330 -13.54958 -13.24501 -13.07408 -12.85582 -12.48801 -12.45891 -12.34794 -12.00736 -11.85177 -11.52565 -11.31232 -11.10039 -11.01677 -10.94168 -10.89897 -10.71676 -10.68243 -10.50164 -9.99354 -9.76468 -9.62281 -9.42188 -9.20620 -8.43799 -8.20018 -7.17291 -6.03107 -4.03962 1.33623 1.43907 3.04557 3.33123 3.37272 3.40460 3.91670 4.42785 4.43690 4.73034 4.84001 4.97026 5.06668 5.13309 5.16575 5.21201 5.31067 5.33218 5.37160 5.49964 5.52425 5.55526 5.65189 5.67086 5.76271 5.82903 5.91705 6.01353 6.04136 6.07350 6.11289 6.16483 6.30411 6.39144 6.47800 6.55951 6.64012 6.73699 6.94193 7.29236 7.36569 7.41089 7.80086 8.01432 8.07786 8.18172 8.53990 9.03845 9.60199 11.07403 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.020368 B = 0.003430 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.384689 B = 8162.454741 C = 8743.659862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.164 4.164 3 C 0.065 3.935 4 N -0.530 5.530 5 C 0.189 3.811 6 C -0.505 4.505 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.093 3.907 15 C -0.146 4.146 16 C -0.037 4.037 17 C -0.194 4.194 18 C 0.310 3.690 19 O -0.307 6.307 20 C 0.082 3.918 21 C -0.168 4.168 22 C -0.150 4.150 23 N -0.541 5.541 24 C 0.155 3.845 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.052 0.948 32 H 0.004 0.996 33 H 0.025 0.975 34 H 0.261 0.739 35 H 0.039 0.961 36 H 0.078 0.922 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.011 5.265 -18.410 19.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.203 4.203 3 C -0.063 4.063 4 N -0.253 5.253 5 C 0.064 3.936 6 C -0.543 4.543 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.035 4.035 15 C -0.149 4.149 16 C -0.063 4.063 17 C -0.215 4.215 18 C 0.131 3.869 19 O -0.215 6.215 20 C 0.025 3.975 21 C -0.226 4.226 22 C -0.207 4.207 23 N -0.264 5.264 24 C 0.000 4.000 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.022 0.978 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.410 6.315 -18.701 20.031 hybrid contribution -0.886 -0.940 1.292 1.827 sum -4.296 5.375 -17.409 18.720 Atomic orbital electron populations 1.21660 0.96495 1.00707 1.01253 1.22187 0.95519 1.00408 1.02185 1.22068 0.88442 0.94391 1.01438 1.62398 1.06597 1.54754 1.01545 1.19800 0.94900 0.93030 0.85828 1.21094 1.38347 1.04913 0.89973 0.92029 1.24959 0.95411 0.95056 0.99055 1.69940 1.41631 1.18343 1.23969 0.86601 0.78750 0.80134 0.82176 1.20324 1.21414 1.20186 1.20925 1.00423 0.93844 0.88346 1.20796 0.95716 0.99651 0.98732 1.21361 0.95546 0.97104 0.92310 1.20959 1.01318 0.98104 1.01102 1.19736 0.90101 0.89396 0.87624 1.86260 1.46447 1.44438 1.44383 1.22274 0.93361 0.86926 0.94901 1.22207 1.02070 0.96872 1.01426 1.21898 1.02880 1.02259 0.93643 1.67257 1.18425 1.29911 1.10798 1.22300 0.98929 0.88878 0.89933 0.93568 0.92696 0.93569 0.93134 0.90389 0.90181 0.92971 0.97832 0.95672 0.92912 0.94305 0.90399 0.84585 0.84731 0.89313 0.91765 0.91312 0.92215 0.90672 0.91978 0.91805 0.82315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.16 -2.80 5.23 -26.73 -0.14 -2.94 16 3 C 0.07 1.21 4.82 -3.82 -0.02 1.20 16 4 N -0.53 -10.81 4.69 -237.51 -1.11 -11.92 16 5 C 0.19 4.68 4.49 -4.98 -0.02 4.65 16 6 C -0.50 -13.76 8.40 -34.44 -0.29 -14.05 16 7 H 0.06 1.69 7.30 -52.49 -0.38 1.30 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.13 13.29 55.43 0.74 -25.40 16 10 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.09 1.57 4.95 -4.97 -0.02 1.55 16 15 C -0.15 -2.21 4.89 -104.47 -0.51 -2.72 16 16 C -0.04 -0.51 8.08 -39.31 -0.32 -0.82 16 17 C -0.19 -2.58 10.04 -39.28 -0.39 -2.98 16 18 C 0.31 4.48 7.45 -17.12 -0.13 4.36 16 19 O -0.31 -4.11 9.76 -18.74 -0.18 -4.29 16 20 C 0.08 0.90 3.11 -26.73 -0.08 0.82 16 21 C -0.17 -1.73 9.53 37.15 0.35 -1.37 16 22 C -0.15 -1.23 9.56 37.16 0.36 -0.87 16 23 N -0.54 -8.13 8.65 -13.33 -0.12 -8.24 16 24 C 0.16 2.33 10.85 -17.57 -0.19 2.14 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.79 5.78 -51.93 -0.30 0.49 16 29 H 0.08 1.59 6.34 -51.93 -0.33 1.26 16 30 H 0.08 1.67 6.94 -51.93 -0.36 1.31 16 31 H 0.05 0.89 5.96 -51.93 -0.31 0.58 16 32 H 0.00 0.10 6.04 -51.92 -0.31 -0.21 16 33 H 0.03 0.67 7.93 -51.93 -0.41 0.26 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.04 0.64 6.04 -51.93 -0.31 0.32 16 36 H 0.08 1.29 7.88 -51.93 -0.41 0.88 16 37 H 0.14 1.67 7.46 -52.48 -0.39 1.28 16 38 H 0.13 1.51 8.06 -52.48 -0.42 1.08 16 39 H 0.09 1.06 6.98 -51.93 -0.36 0.69 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.16 2.21 8.06 -52.48 -0.42 1.78 16 LS Contribution 366.38 15.07 5.52 5.52 Total: -1.00 -29.38 366.38 -8.98 -38.37 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -7.67 Total: 0.80 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -1.14 Total: -11.25 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: -0.49 Total: -45.57 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -0.18 Total: -4.29 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.38 -8.98 -38.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231534708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.390 kcal (2) G-P(sol) polarization free energy of solvation -29.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds