Wall clock time and date at job start Tue Mar 31 2020 06:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46908 * 2 1 4 4 N 1.46903 * 109.46949 * 180.91731 * 3 2 1 5 5 C 1.46896 * 111.00008 * 299.24011 * 4 3 2 6 6 C 1.50697 * 109.47343 * 293.96143 * 5 4 3 7 7 H 1.08000 * 120.00046 * 355.03959 * 6 5 4 8 8 C 1.37883 * 120.00213 * 175.04321 * 6 5 4 9 9 N 1.31514 * 119.99926 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99860 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47287 * 59.99473 * 10 8 6 12 12 H 1.48504 * 109.46769 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47031 * 299.99180 * 10 8 6 14 14 C 1.46903 * 111.00159 * 63.19362 * 4 3 2 15 15 C 1.50706 * 109.46723 * 66.04833 * 14 4 3 16 16 C 1.38825 * 120.35352 * 269.97620 * 15 14 4 17 17 C 1.38376 * 118.48433 * 179.75443 * 16 15 14 18 18 C 1.38912 * 119.11187 * 0.51176 * 17 16 15 19 19 O 1.35680 * 119.68618 * 179.75236 * 18 17 16 20 20 C 1.42904 * 117.00111 * 179.72296 * 19 18 17 21 21 C 1.52994 * 109.47300 * 270.00364 * 20 19 18 22 22 C 1.53001 * 109.46864 * 149.99913 * 20 19 18 23 23 N 1.32250 * 120.63213 * 359.47670 * 18 17 16 24 24 C 1.31964 * 121.64150 * 0.27674 * 23 18 17 25 25 H 1.08993 * 109.47059 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46789 * 300.00362 * 1 2 3 27 27 H 1.08999 * 109.46740 * 60.00117 * 1 2 3 28 28 H 1.09000 * 109.47298 * 240.00163 * 2 1 3 29 29 H 1.08997 * 109.47202 * 119.99274 * 2 1 3 30 30 H 1.08993 * 109.47298 * 60.91548 * 3 2 1 31 31 H 1.09004 * 109.46936 * 300.91181 * 3 2 1 32 32 H 1.09012 * 109.47183 * 53.95788 * 5 4 3 33 33 H 1.08999 * 109.47571 * 173.95430 * 5 4 3 34 34 H 0.96996 * 119.99748 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.47129 * 306.04958 * 14 4 3 36 36 H 1.08996 * 109.47110 * 186.04350 * 14 4 3 37 37 H 1.08004 * 120.75703 * 0.02562 * 16 15 14 38 38 H 1.08007 * 120.44296 * 180.26125 * 17 16 15 39 39 H 1.09001 * 109.47072 * 30.00581 * 20 19 18 40 40 H 1.09003 * 109.47526 * 59.99896 * 21 20 19 41 41 H 1.09004 * 109.46826 * 179.97438 * 21 20 19 42 42 H 1.08994 * 109.47331 * 299.99760 * 21 20 19 43 43 H 1.08995 * 109.46943 * 180.02562 * 22 20 19 44 44 H 1.08995 * 109.47293 * 300.00394 * 22 20 19 45 45 H 1.09001 * 109.46730 * 60.00459 * 22 20 19 46 46 H 1.08007 * 119.57965 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5089 1.4426 -0.0222 5 6 4.0533 0.7664 1.1628 6 6 3.7132 1.5626 2.3962 7 1 3.2195 2.5187 2.3027 8 6 4.0323 1.0707 3.6441 9 7 4.6330 -0.0937 3.7581 10 14 3.6113 2.0581 5.1729 11 1 2.1430 2.2711 5.2359 12 1 4.0555 1.3153 6.3797 13 1 4.3004 3.3724 5.1186 14 6 4.0168 0.8307 -1.2573 15 6 3.6404 1.6913 -2.4358 16 6 2.4415 1.4813 -3.1034 17 6 2.1323 2.2974 -4.1773 18 6 3.0315 3.2864 -4.5554 19 8 2.7424 4.0899 -5.6098 20 6 3.7047 5.0917 -5.9451 21 6 3.3914 6.3773 -5.1773 22 6 3.6492 5.3692 -7.4487 23 7 4.1642 3.4558 -3.8942 24 6 4.4843 2.6966 -2.8634 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6902 1.9516 0.8980 31 1 1.6633 1.9611 -0.8817 32 1 3.6202 -0.2307 1.2432 33 1 5.1363 0.6856 1.0696 34 1 4.8578 -0.4396 4.6359 35 1 3.5806 -0.1609 -1.3775 36 1 5.1020 0.7460 -1.2012 37 1 1.7635 0.7015 -2.7891 38 1 1.2060 2.1646 -4.7167 39 1 4.7017 4.7421 -5.6768 40 1 3.4309 6.1797 -4.1060 41 1 4.1257 7.1413 -5.4327 42 1 2.3945 6.7270 -5.4456 43 1 4.3835 6.1329 -7.7046 44 1 3.8724 4.4532 -7.9957 45 1 2.6522 5.7188 -7.7170 46 1 5.4181 2.8644 -2.3472 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231534708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:38 Heat of formation + Delta-G solvation = -30.086488 kcal Electronic energy + Delta-G solvation = -23646.028637 eV Core-core repulsion = 20341.975212 eV Total energy + Delta-G solvation = -3304.053425 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.70438 -39.77915 -38.53223 -34.89881 -34.34254 -33.78152 -33.26963 -31.67633 -28.94965 -28.15911 -27.44432 -25.68181 -24.98491 -23.73089 -23.13424 -22.03394 -20.79842 -19.45374 -18.34836 -17.84278 -16.97317 -16.66361 -16.50663 -16.10236 -15.91293 -15.58354 -15.35025 -15.17141 -14.82621 -14.52553 -14.19792 -14.06340 -13.90710 -13.35491 -13.25296 -13.16008 -13.11848 -12.90674 -12.82153 -12.62067 -12.60052 -12.38128 -12.28849 -12.21011 -11.86743 -11.73894 -11.67709 -11.33981 -11.23549 -10.76587 -10.57755 -10.48728 -9.34884 -8.82648 -8.16506 -6.25072 0.22073 0.32055 1.41203 1.43210 1.50995 2.08802 2.41610 2.77187 3.16103 3.36361 3.54184 3.88113 3.94680 3.97412 4.05649 4.09237 4.15634 4.22156 4.24308 4.31092 4.51541 4.55071 4.64146 4.70634 4.78645 4.84625 4.85778 4.86357 4.91140 4.94397 5.03004 5.08622 5.14407 5.21454 5.22485 5.27507 5.35227 5.41525 5.47325 5.53899 5.57432 5.70644 6.11509 6.32952 6.39748 6.69396 6.89844 6.91442 7.43880 8.93285 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.020368 B = 0.003430 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.384689 B = 8162.454741 C = 8743.659862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.155 4.155 3 C 0.070 3.930 4 N -0.540 5.540 5 C 0.206 3.794 6 C -0.517 4.517 7 H 0.056 0.944 8 C 0.006 3.994 9 N -0.932 5.932 10 Si 0.960 3.040 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.271 1.271 14 C 0.099 3.901 15 C -0.156 4.156 16 C -0.032 4.032 17 C -0.190 4.190 18 C 0.301 3.699 19 O -0.313 6.313 20 C 0.074 3.926 21 C -0.164 4.164 22 C -0.143 4.143 23 N -0.551 5.551 24 C 0.146 3.854 25 H 0.059 0.941 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.037 0.963 30 H 0.052 0.948 31 H 0.074 0.926 32 H -0.016 1.016 33 H 0.000 1.000 34 H 0.263 0.737 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.155 0.845 38 H 0.160 0.840 39 H 0.076 0.924 40 H 0.038 0.962 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.095 0.905 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.516 6.185 -19.972 21.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.194 4.194 3 C -0.058 4.058 4 N -0.263 5.263 5 C 0.080 3.920 6 C -0.556 4.556 7 H 0.074 0.926 8 C -0.192 4.192 9 N -0.573 5.573 10 Si 0.785 3.215 11 H -0.195 1.195 12 H -0.209 1.209 13 H -0.196 1.196 14 C -0.029 4.029 15 C -0.159 4.159 16 C -0.058 4.058 17 C -0.211 4.211 18 C 0.122 3.878 19 O -0.221 6.221 20 C 0.018 3.982 21 C -0.221 4.221 22 C -0.200 4.200 23 N -0.275 5.275 24 C -0.009 4.009 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.002 0.998 33 H 0.018 0.982 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.172 0.828 38 H 0.178 0.822 39 H 0.094 0.906 40 H 0.058 0.942 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.114 0.886 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.924 7.248 -20.288 22.099 hybrid contribution -0.401 -1.182 1.659 2.076 sum -5.325 6.066 -18.629 20.302 Atomic orbital electron populations 1.21625 0.93987 1.01933 1.02035 1.22058 0.97677 0.98735 1.00958 1.22014 0.87272 0.95468 1.01035 1.62259 1.07868 1.54724 1.01459 1.19415 0.93238 0.92122 0.87252 1.21386 1.38030 1.04863 0.91288 0.92582 1.25777 0.95252 0.96023 1.02161 1.70058 1.42689 1.19846 1.24700 0.85584 0.78824 0.78704 0.78406 1.19461 1.20916 1.19634 1.20863 1.00170 0.94439 0.87428 1.20598 0.96847 0.99895 0.98531 1.21534 0.94956 0.97321 0.92000 1.21236 1.01887 0.97177 1.00768 1.20060 0.90111 0.89818 0.87771 1.86263 1.47197 1.44756 1.43862 1.22520 0.92300 0.86533 0.96867 1.22181 1.03140 0.97140 0.99670 1.21895 1.03930 1.02938 0.91271 1.67266 1.19134 1.30119 1.10948 1.22378 0.99257 0.89078 0.90213 0.92158 0.93631 0.91056 0.91483 0.94432 0.92946 0.90726 0.99812 0.98231 0.92827 0.93574 0.90856 0.82763 0.82209 0.90577 0.94243 0.89297 0.91582 0.88596 0.92007 0.91228 0.82177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.91 71.98 0.71 -2.95 16 2 C -0.16 -5.20 5.23 30.60 0.16 -5.04 16 3 C 0.07 2.60 4.82 86.30 0.42 3.02 16 4 N -0.54 -22.40 4.69 -905.34 -4.25 -26.65 16 5 C 0.21 10.58 4.49 85.56 0.38 10.96 16 6 C -0.52 -28.97 8.40 25.60 0.22 -28.75 16 7 H 0.06 3.14 7.30 -2.91 -0.02 3.11 16 8 C 0.01 0.33 5.46 84.66 0.46 0.80 16 9 N -0.93 -55.46 13.29 21.45 0.28 -55.18 16 10 Si 0.96 44.37 29.54 68.60 2.03 46.40 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 13 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 14 C 0.10 3.34 4.95 85.56 0.42 3.77 16 15 C -0.16 -4.56 4.89 -19.77 -0.10 -4.66 16 16 C -0.03 -0.80 8.08 22.44 0.18 -0.62 16 17 C -0.19 -4.57 10.04 22.46 0.23 -4.35 16 18 C 0.30 8.27 7.45 84.79 0.63 8.90 16 19 O -0.31 -7.85 9.76 -89.97 -0.88 -8.73 16 20 C 0.07 1.52 3.11 30.59 0.10 1.61 16 21 C -0.16 -3.14 9.53 71.98 0.69 -2.45 16 22 C -0.14 -2.02 9.56 71.98 0.69 -1.33 16 23 N -0.55 -16.25 8.65 -308.95 -2.67 -18.92 16 24 C 0.15 4.35 10.85 84.63 0.92 5.27 16 25 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.07 2.00 5.78 -2.39 -0.01 1.99 16 29 H 0.04 1.56 6.34 -2.39 -0.02 1.55 16 30 H 0.05 2.22 6.94 -2.39 -0.02 2.20 16 31 H 0.07 2.42 5.96 -2.38 -0.01 2.41 16 32 H -0.02 -0.86 6.04 -2.38 -0.01 -0.88 16 33 H 0.00 -0.02 7.93 -2.39 -0.02 -0.04 16 34 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 35 H 0.05 1.49 6.04 -2.39 -0.01 1.47 16 36 H 0.07 2.51 7.88 -2.39 -0.02 2.49 16 37 H 0.15 3.24 7.46 -2.91 -0.02 3.22 16 38 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 39 H 0.08 1.76 6.98 -2.39 -0.02 1.74 16 40 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 43 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.16 4.55 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -64.37 366.38 1.56 -62.81 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.94 Total: 16.11 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: 6.10 Total: -15.84 kcal Atomic # 7 Polarization: -94.11 SS G_CDS: -6.64 Total: -100.75 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.88 Total: -8.73 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -64.37 1.56 -62.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231534708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.728 kcal (2) G-P(sol) polarization free energy of solvation -64.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds