Wall clock time and date at job start Tue Mar 31 2020 06:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 119.99948 * 2 1 4 4 N 1.46500 * 109.46911 * 124.99426 * 3 2 1 5 5 C 1.46876 * 124.37593 * 269.99503 * 4 3 2 6 6 C 1.54703 * 105.52035 * 196.80464 * 5 4 3 7 7 C 1.53617 * 101.50606 * 335.46808 * 6 5 4 8 8 C 1.53256 * 111.06036 * 145.03489 * 7 6 5 9 9 C 1.54644 * 104.67087 * 120.99849 * 8 7 6 10 10 N 1.48655 * 104.63364 * 336.30631 * 9 8 7 11 11 C 1.46892 * 111.00090 * 158.51770 * 10 9 8 12 12 C 1.53004 * 109.47403 * 74.38383 * 11 10 9 13 13 C 1.52992 * 109.47275 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.47024 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99833 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99808 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00129 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99849 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47142 * 59.99709 * 18 16 14 20 20 H 1.48494 * 109.47105 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47111 * 299.99932 * 18 16 14 22 22 C 1.48801 * 104.37884 * 38.86566 * 10 9 8 23 23 C 1.34758 * 124.36980 * 89.98010 * 4 3 2 24 24 O 1.21289 * 125.13569 * 359.01256 * 23 4 3 25 25 H 1.08007 * 119.99821 * 179.97438 * 1 2 3 26 26 H 1.07994 * 119.99921 * 0.02562 * 1 2 3 27 27 H 1.08008 * 119.99789 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.47042 * 4.99383 * 3 2 1 29 29 H 1.09001 * 109.46574 * 244.99211 * 3 2 1 30 30 H 1.09003 * 110.23377 * 315.81584 * 5 4 3 31 31 H 1.09004 * 110.23402 * 77.70004 * 5 4 3 32 32 H 1.09002 * 111.01363 * 217.41845 * 6 5 4 33 33 H 1.08994 * 111.02072 * 93.53321 * 6 5 4 34 34 H 1.08991 * 110.39685 * 239.80078 * 8 7 6 35 35 H 1.08999 * 110.39424 * 2.20146 * 8 7 6 36 36 H 1.08995 * 110.40565 * 95.09892 * 9 8 7 37 37 H 1.09010 * 110.39973 * 217.51806 * 9 8 7 38 38 H 1.08997 * 109.47560 * 194.38566 * 11 10 9 39 39 H 1.09009 * 109.47156 * 314.38870 * 11 10 9 40 40 H 1.09006 * 109.47136 * 300.00509 * 12 11 10 41 41 H 1.08997 * 109.46885 * 59.99851 * 12 11 10 42 42 H 1.08999 * 109.47251 * 299.99518 * 13 12 11 43 43 H 1.08997 * 109.47472 * 59.99982 * 13 12 11 44 44 H 0.96994 * 119.99644 * 180.02562 * 17 16 14 45 45 H 1.09002 * 110.45601 * 202.73745 * 22 10 9 46 46 H 1.08995 * 110.45716 * 80.17207 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9936 1.3320 1.1315 5 6 2.6602 1.8438 2.4672 6 6 4.0174 2.0725 3.1736 7 6 4.9265 1.0941 2.4147 8 6 6.3428 1.6607 2.2661 9 6 7.2550 0.6215 2.9585 10 7 6.3619 -0.0845 3.9144 11 6 6.9099 -1.3990 4.2742 12 6 8.0889 -1.2154 5.2319 13 6 8.6600 -2.5845 5.6061 14 6 9.8209 -2.4036 6.5500 15 1 10.1209 -1.4113 6.8529 16 6 10.4999 -3.5049 7.0267 17 7 10.1341 -4.7132 6.6582 18 14 11.9383 -3.2807 8.1971 19 1 11.4739 -2.5863 9.4250 20 1 12.4928 -4.6095 8.5603 21 1 12.9915 -2.4679 7.5372 22 6 5.0744 -0.2258 3.1818 23 6 4.2657 0.8899 1.0813 24 8 4.7968 0.4009 0.1067 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6214 1.4025 -0.9314 30 1 2.1145 2.7838 2.3853 31 1 2.0674 1.1108 3.0146 32 1 3.9572 1.8109 4.2300 33 1 4.3563 3.1005 3.0458 34 1 6.6056 1.7548 1.2125 35 1 6.4198 2.6264 2.7655 36 1 7.6574 -0.0786 2.2264 37 1 8.0636 1.1214 3.4921 38 1 6.1368 -1.9945 4.7597 39 1 7.2499 -1.9099 3.3732 40 1 8.8621 -0.6199 4.7464 41 1 7.7490 -0.7045 6.1327 42 1 7.8871 -3.1803 6.0916 43 1 9.0000 -3.0950 4.7051 44 1 10.6116 -5.4879 6.9938 45 1 4.2494 -0.3536 3.8826 46 1 5.1206 -1.0659 2.4889 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040760.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:52 Heat of formation + Delta-G solvation = -15.838686 kcal Electronic energy + Delta-G solvation = -23445.309799 eV Core-core repulsion = 20141.874205 eV Total energy + Delta-G solvation = -3303.435594 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.30939 -38.25157 -36.71130 -35.30481 -33.97088 -32.52506 -30.95868 -29.77510 -28.31076 -26.79082 -26.18680 -23.88590 -22.84048 -21.61628 -20.94336 -20.35725 -19.91211 -18.93153 -16.96608 -16.54884 -16.20659 -15.92903 -15.47140 -15.17973 -14.59949 -14.40753 -14.30150 -14.13131 -13.81588 -13.46435 -13.15008 -13.00876 -12.64790 -12.50598 -12.39160 -12.04249 -11.98726 -11.63885 -11.45608 -11.33775 -11.09394 -11.06947 -10.81341 -10.68920 -10.50983 -10.43942 -9.99576 -9.75135 -9.58652 -9.27824 -9.04621 -9.01687 -8.30411 -8.25738 -5.95499 -3.97473 1.72971 2.35911 2.84334 3.36525 3.40493 3.43254 3.91870 4.16342 4.35025 4.39982 4.49053 4.51904 4.61450 4.71581 4.81370 5.00602 5.03932 5.16447 5.25195 5.31718 5.40107 5.42706 5.50100 5.56293 5.59423 5.69356 5.74362 5.76043 5.87025 5.99230 6.05220 6.10238 6.15269 6.19819 6.35391 6.39313 6.69063 6.78604 6.81109 7.02749 7.23042 7.35573 7.73025 7.88457 7.96489 8.05230 8.48475 9.09621 9.66168 11.16009 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.031799 B = 0.002628 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.306776 B =10653.625742 C =10957.460965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.171 4.171 3 C 0.153 3.847 4 N -0.620 5.620 5 C 0.102 3.898 6 C -0.116 4.116 7 C -0.099 4.099 8 C -0.102 4.102 9 C 0.034 3.966 10 N -0.505 5.505 11 C 0.044 3.956 12 C -0.100 4.100 13 C 0.021 3.979 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.056 3.944 23 C 0.531 3.469 24 O -0.522 6.522 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.047 0.953 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.033 0.967 40 H 0.046 0.954 41 H 0.055 0.945 42 H 0.015 0.985 43 H 0.013 0.987 44 H 0.260 0.740 45 H 0.086 0.914 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.931 15.795 -11.520 27.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.190 4.190 3 C 0.031 3.969 4 N -0.354 5.354 5 C -0.021 4.021 6 C -0.154 4.154 7 C -0.103 4.103 8 C -0.141 4.141 9 C -0.094 4.094 10 N -0.229 5.229 11 C -0.083 4.083 12 C -0.138 4.138 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.073 4.073 23 C 0.319 3.681 24 O -0.398 6.398 25 H 0.118 0.882 26 H 0.116 0.884 27 H 0.129 0.871 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.033 0.967 43 H 0.032 0.968 44 H 0.070 0.930 45 H 0.105 0.895 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -19.708 15.636 -11.574 27.692 hybrid contribution 0.757 -0.638 -0.128 0.998 sum -18.952 14.998 -11.703 26.852 Atomic orbital electron populations 1.23872 0.95610 1.02109 1.00112 1.23374 0.96223 0.99249 1.00182 1.20462 0.91675 0.95362 0.89376 1.48408 1.12244 1.62959 1.11783 1.22205 0.98035 0.99439 0.82428 1.22679 0.92538 0.99420 1.00715 1.21402 0.97201 0.98175 0.93472 1.22227 0.91230 0.99178 1.01438 1.23193 0.96138 0.96043 0.94031 1.65563 1.01930 1.19900 1.35499 1.22489 0.98560 0.88279 0.99018 1.21570 0.94296 1.00780 0.97166 1.19077 0.95524 0.90732 0.96306 1.21219 1.14547 0.92582 1.27271 0.92716 1.25035 0.97531 0.95313 0.96678 1.69959 1.41118 0.97713 1.44876 0.86656 0.82773 0.77120 0.81434 1.20233 1.21349 1.20267 1.22862 0.95067 0.93680 0.95693 1.20547 0.81622 0.76447 0.89512 1.90719 1.68170 1.43810 1.37063 0.88165 0.88416 0.87134 0.89900 0.89228 0.90399 0.90987 0.88132 0.89749 0.90666 0.90147 0.93432 0.89466 0.91233 0.94836 0.93533 0.92598 0.96659 0.96847 0.93007 0.89538 0.93473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.13 14.32 29.01 0.42 -0.72 16 2 C -0.17 -1.39 9.85 -36.02 -0.35 -1.74 16 3 C 0.15 1.21 6.38 -5.19 -0.03 1.18 16 4 N -0.62 -5.83 2.93 -173.90 -0.51 -6.34 16 5 C 0.10 0.69 7.37 -2.94 -0.02 0.67 16 6 C -0.12 -0.90 6.08 -25.51 -0.16 -1.05 16 7 C -0.10 -1.10 0.83 -155.25 -0.13 -1.23 16 8 C -0.10 -1.19 6.27 -25.73 -0.16 -1.36 16 9 C 0.03 0.48 5.93 -1.99 -0.01 0.47 16 10 N -0.51 -7.65 5.34 -230.15 -1.23 -8.88 16 11 C 0.04 0.79 4.83 -3.83 -0.02 0.77 16 12 C -0.10 -2.12 5.27 -26.73 -0.14 -2.26 16 13 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 14 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 18 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 22 C 0.06 0.73 5.52 -2.58 -0.01 0.71 16 23 C 0.53 6.71 6.65 -11.23 -0.07 6.63 16 24 O -0.52 -8.62 17.18 5.55 0.10 -8.52 16 25 H 0.10 0.58 8.06 -52.48 -0.42 0.16 16 26 H 0.10 0.47 7.84 -52.49 -0.41 0.06 16 27 H 0.11 1.09 8.06 -52.48 -0.42 0.66 16 28 H 0.08 0.44 7.79 -51.93 -0.40 0.04 16 29 H 0.09 0.80 7.95 -51.93 -0.41 0.38 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.10 0.75 7.70 -51.93 -0.40 0.35 16 33 H 0.08 0.56 7.61 -51.93 -0.40 0.17 16 34 H 0.07 0.93 7.47 -51.93 -0.39 0.54 16 35 H 0.08 0.79 7.44 -51.93 -0.39 0.40 16 36 H 0.05 0.73 7.74 -51.93 -0.40 0.33 16 37 H 0.09 1.22 7.87 -51.92 -0.41 0.81 16 38 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 39 H 0.03 0.63 7.77 -51.92 -0.40 0.22 16 40 H 0.05 0.98 7.47 -51.93 -0.39 0.59 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.09 1.00 7.68 -51.93 -0.40 0.60 16 46 H 0.05 0.70 7.77 -51.93 -0.40 0.29 16 LS Contribution 369.48 15.07 5.57 5.57 Total: -1.00 -33.25 369.48 -9.73 -42.98 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -8.12 Total: -3.77 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -1.25 Total: -11.28 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: -1.00 Total: -41.98 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.10 Total: -8.52 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.25 -9.73 -42.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040760.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.143 kcal (2) G-P(sol) polarization free energy of solvation -33.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds