Wall clock time and date at job start Tue Mar 31 2020 06:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 119.99948 * 2 1 4 4 N 1.46500 * 109.46911 * 124.99426 * 3 2 1 5 5 C 1.46876 * 124.37593 * 269.99503 * 4 3 2 6 6 C 1.54703 * 105.52035 * 196.80464 * 5 4 3 7 7 C 1.53617 * 101.50606 * 335.46808 * 6 5 4 8 8 C 1.53256 * 111.06036 * 145.03489 * 7 6 5 9 9 C 1.54644 * 104.67087 * 120.99849 * 8 7 6 10 10 N 1.48655 * 104.63364 * 336.30631 * 9 8 7 11 11 C 1.46892 * 111.00090 * 158.51770 * 10 9 8 12 12 C 1.53004 * 109.47403 * 74.38383 * 11 10 9 13 13 C 1.52992 * 109.47275 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.47024 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99833 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99808 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00129 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99849 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47142 * 59.99709 * 18 16 14 20 20 H 1.48494 * 109.47105 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47111 * 299.99932 * 18 16 14 22 22 C 1.48801 * 104.37884 * 38.86566 * 10 9 8 23 23 C 1.34758 * 124.36980 * 89.98010 * 4 3 2 24 24 O 1.21289 * 125.13569 * 359.01256 * 23 4 3 25 25 H 1.08007 * 119.99821 * 179.97438 * 1 2 3 26 26 H 1.07994 * 119.99921 * 0.02562 * 1 2 3 27 27 H 1.08008 * 119.99789 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.47042 * 4.99383 * 3 2 1 29 29 H 1.09001 * 109.46574 * 244.99211 * 3 2 1 30 30 H 1.09003 * 110.23377 * 315.81584 * 5 4 3 31 31 H 1.09004 * 110.23402 * 77.70004 * 5 4 3 32 32 H 1.09002 * 111.01363 * 217.41845 * 6 5 4 33 33 H 1.08994 * 111.02072 * 93.53321 * 6 5 4 34 34 H 1.08991 * 110.39685 * 239.80078 * 8 7 6 35 35 H 1.08999 * 110.39424 * 2.20146 * 8 7 6 36 36 H 1.08995 * 110.40565 * 95.09892 * 9 8 7 37 37 H 1.09010 * 110.39973 * 217.51806 * 9 8 7 38 38 H 1.08997 * 109.47560 * 194.38566 * 11 10 9 39 39 H 1.09009 * 109.47156 * 314.38870 * 11 10 9 40 40 H 1.09006 * 109.47136 * 300.00509 * 12 11 10 41 41 H 1.08997 * 109.46885 * 59.99851 * 12 11 10 42 42 H 1.08999 * 109.47251 * 299.99518 * 13 12 11 43 43 H 1.08997 * 109.47472 * 59.99982 * 13 12 11 44 44 H 0.96994 * 119.99644 * 180.02562 * 17 16 14 45 45 H 1.09002 * 110.45601 * 202.73745 * 22 10 9 46 46 H 1.08995 * 110.45716 * 80.17207 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9936 1.3320 1.1315 5 6 2.6602 1.8438 2.4672 6 6 4.0174 2.0725 3.1736 7 6 4.9265 1.0941 2.4147 8 6 6.3428 1.6607 2.2661 9 6 7.2550 0.6215 2.9585 10 7 6.3619 -0.0845 3.9144 11 6 6.9099 -1.3990 4.2742 12 6 8.0889 -1.2154 5.2319 13 6 8.6600 -2.5845 5.6061 14 6 9.8209 -2.4036 6.5500 15 1 10.1209 -1.4113 6.8529 16 6 10.4999 -3.5049 7.0267 17 7 10.1341 -4.7132 6.6582 18 14 11.9383 -3.2807 8.1971 19 1 11.4739 -2.5863 9.4250 20 1 12.4928 -4.6095 8.5603 21 1 12.9915 -2.4679 7.5372 22 6 5.0744 -0.2258 3.1818 23 6 4.2657 0.8899 1.0813 24 8 4.7968 0.4009 0.1067 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6214 1.4025 -0.9314 30 1 2.1145 2.7838 2.3853 31 1 2.0674 1.1108 3.0146 32 1 3.9572 1.8109 4.2300 33 1 4.3563 3.1005 3.0458 34 1 6.6056 1.7548 1.2125 35 1 6.4198 2.6264 2.7655 36 1 7.6574 -0.0786 2.2264 37 1 8.0636 1.1214 3.4921 38 1 6.1368 -1.9945 4.7597 39 1 7.2499 -1.9099 3.3732 40 1 8.8621 -0.6199 4.7464 41 1 7.7490 -0.7045 6.1327 42 1 7.8871 -3.1803 6.0916 43 1 9.0000 -3.0950 4.7051 44 1 10.6116 -5.4879 6.9938 45 1 4.2494 -0.3536 3.8826 46 1 5.1206 -1.0659 2.4889 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040760.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:51 Heat of formation + Delta-G solvation = -37.228448 kcal Electronic energy + Delta-G solvation = -23446.237329 eV Core-core repulsion = 20141.874205 eV Total energy + Delta-G solvation = -3304.363124 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.19697 -39.36778 -37.62230 -36.45557 -35.44438 -34.07958 -32.30600 -30.90508 -29.30701 -28.11888 -27.25961 -25.26301 -24.07138 -22.75126 -22.10809 -21.57463 -20.91989 -19.85736 -18.49650 -17.75605 -17.29185 -16.91845 -16.53911 -16.36162 -16.20987 -15.83749 -15.29246 -15.08672 -14.67043 -14.55610 -14.32011 -14.25033 -14.05325 -13.54219 -13.39610 -13.24252 -13.11125 -12.98083 -12.73339 -12.53135 -12.39539 -12.32172 -12.26690 -12.17366 -11.84346 -11.67262 -11.42754 -11.36542 -11.11071 -10.80226 -10.54905 -10.43128 -9.76736 -9.57067 -8.19882 -6.31274 1.14831 1.40090 1.41732 1.43891 1.51755 2.14594 2.41351 2.89774 3.13082 3.35787 3.38490 3.48540 3.88392 3.92561 4.00533 4.09316 4.14535 4.22215 4.29866 4.38694 4.43007 4.49747 4.57894 4.67349 4.69131 4.72189 4.73923 4.83034 4.92685 4.93934 4.98792 5.04511 5.06464 5.15604 5.20933 5.24012 5.47544 5.51596 5.63742 5.69561 5.76813 5.81889 5.85509 5.93968 6.04892 6.26057 6.85462 7.07503 7.37946 8.92121 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.031799 B = 0.002628 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.306776 B =10653.625742 C =10957.460965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.198 4.198 3 C 0.151 3.849 4 N -0.613 5.613 5 C 0.099 3.901 6 C -0.107 4.107 7 C -0.098 4.098 8 C -0.095 4.095 9 C 0.029 3.971 10 N -0.500 5.500 11 C 0.055 3.945 12 C -0.082 4.082 13 C 0.025 3.975 14 C -0.542 4.542 15 H 0.062 0.938 16 C -0.003 4.003 17 N -0.936 5.936 18 Si 0.968 3.032 19 H -0.264 1.264 20 H -0.283 1.283 21 H -0.267 1.267 22 C 0.057 3.943 23 C 0.521 3.479 24 O -0.576 6.576 25 H 0.104 0.896 26 H 0.123 0.877 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.108 0.892 36 H 0.025 0.975 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.018 0.982 40 H 0.047 0.953 41 H 0.059 0.941 42 H -0.007 1.007 43 H -0.015 1.015 44 H 0.264 0.736 45 H 0.106 0.894 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.574 18.639 -10.216 30.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.217 4.217 3 C 0.030 3.970 4 N -0.345 5.345 5 C -0.022 4.022 6 C -0.145 4.145 7 C -0.102 4.102 8 C -0.133 4.133 9 C -0.099 4.099 10 N -0.223 5.223 11 C -0.073 4.073 12 C -0.120 4.120 13 C -0.013 4.013 14 C -0.580 4.580 15 H 0.080 0.920 16 C -0.201 4.201 17 N -0.576 5.576 18 Si 0.792 3.208 19 H -0.189 1.189 20 H -0.209 1.209 21 H -0.192 1.192 22 C -0.072 4.072 23 C 0.309 3.691 24 O -0.456 6.456 25 H 0.122 0.878 26 H 0.141 0.859 27 H 0.099 0.901 28 H 0.137 0.863 29 H 0.090 0.910 30 H 0.130 0.870 31 H 0.099 0.901 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.043 0.957 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.036 0.964 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.011 0.989 43 H 0.003 0.997 44 H 0.072 0.928 45 H 0.124 0.876 46 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -21.402 18.516 -10.257 30.101 hybrid contribution 1.169 -1.567 -0.587 2.041 sum -20.233 16.949 -10.844 28.535 Atomic orbital electron populations 1.24085 0.94759 1.03501 0.96811 1.23207 0.96936 0.98272 1.03297 1.20607 0.91679 0.96459 0.88245 1.48567 1.11258 1.61330 1.13296 1.22466 0.97859 1.01209 0.80660 1.22723 0.91864 0.99228 1.00670 1.21398 0.97701 0.97910 0.93181 1.22200 0.90904 0.99498 1.00709 1.23255 0.96799 0.96287 0.93591 1.65521 1.02812 1.17729 1.36276 1.22216 0.97533 0.89930 0.97650 1.21291 0.95284 0.97484 0.97984 1.18983 0.94712 0.93057 0.94553 1.21663 1.15406 0.93096 1.27835 0.92021 1.26037 1.00681 0.94848 0.98514 1.70103 1.42639 0.98689 1.46187 0.85465 0.78847 0.77384 0.79146 1.18878 1.20867 1.19177 1.22912 0.94398 0.94226 0.95644 1.20837 0.82811 0.76150 0.89309 1.90683 1.69616 1.46370 1.38901 0.87782 0.85883 0.90112 0.86273 0.91026 0.86997 0.90069 0.87224 0.87816 0.91779 0.87367 0.95697 0.89127 0.91049 0.96400 0.93442 0.92185 0.98892 0.99697 0.92780 0.87552 0.96074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 14.32 67.78 0.97 -0.60 16 2 C -0.20 -3.08 9.85 25.65 0.25 -2.83 16 3 C 0.15 2.17 6.38 85.63 0.55 2.71 16 4 N -0.61 -10.52 2.93 -822.50 -2.41 -12.93 16 5 C 0.10 0.97 7.37 86.89 0.64 1.61 16 6 C -0.11 -1.28 6.08 31.38 0.19 -1.09 16 7 C -0.10 -2.08 0.83 -52.66 -0.04 -2.12 16 8 C -0.09 -2.13 6.27 31.24 0.20 -1.94 16 9 C 0.03 0.82 5.93 86.52 0.51 1.34 16 10 N -0.50 -15.07 5.34 -882.07 -4.71 -19.78 16 11 C 0.06 2.04 4.83 86.31 0.42 2.46 16 12 C -0.08 -3.56 5.27 30.59 0.16 -3.40 16 13 C 0.02 1.35 4.97 29.85 0.15 1.50 16 14 C -0.54 -31.79 9.11 25.60 0.23 -31.55 16 15 H 0.06 3.45 7.74 -2.91 -0.02 3.42 16 16 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 17 N -0.94 -58.54 13.29 21.45 0.28 -58.26 16 18 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 19 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 C 0.06 1.47 5.52 86.06 0.47 1.94 16 23 C 0.52 13.18 6.65 87.51 0.58 13.76 16 24 O -0.58 -20.15 17.18 -3.06 -0.05 -20.20 16 25 H 0.10 0.99 8.06 -2.91 -0.02 0.97 16 26 H 0.12 0.66 7.84 -2.91 -0.02 0.64 16 27 H 0.08 1.71 8.06 -2.91 -0.02 1.69 16 28 H 0.12 0.83 7.79 -2.39 -0.02 0.81 16 29 H 0.07 1.28 7.95 -2.39 -0.02 1.26 16 30 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.11 1.19 7.70 -2.39 -0.02 1.17 16 33 H 0.10 0.90 7.61 -2.39 -0.02 0.88 16 34 H 0.06 1.60 7.47 -2.39 -0.02 1.59 16 35 H 0.11 1.83 7.44 -2.39 -0.02 1.81 16 36 H 0.02 0.82 7.74 -2.39 -0.02 0.80 16 37 H 0.09 2.51 7.87 -2.38 -0.02 2.49 16 38 H 0.07 2.60 8.08 -2.39 -0.02 2.58 16 39 H 0.02 0.71 7.77 -2.38 -0.02 0.69 16 40 H 0.05 2.02 7.47 -2.38 -0.02 2.00 16 41 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 42 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 43 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 44 H 0.26 15.47 8.31 -92.71 -0.77 14.69 16 45 H 0.11 2.31 7.68 -2.39 -0.02 2.29 16 46 H 0.02 0.66 7.77 -2.39 -0.02 0.64 16 Total: -1.00 -75.58 369.48 1.81 -73.77 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 0.92 Total: 8.21 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: 5.74 Total: -17.95 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -6.83 Total: -90.97 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.05 Total: -20.20 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -75.58 1.81 -73.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040760.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.541 kcal (2) G-P(sol) polarization free energy of solvation -75.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds